Isolates Of Pathotype Research Articles

Resistance of barley cultivars and accessions to pathotypes of the spot blotch causative agent

Background. The spot blotch disease caused by the hemibiotrophic fungus Bipolaris sorokiniana has become a serious problem for barley. Utilization of resistant or tolerant barley cultivars ensures sustainable diversity conservation and environmentfriendly crop production. Thus, supplying barley breeders with sources of resistance to harmful diseases is an urgent task. Materials and methods. A set of 100 barley accessions, earlier selected for different levels of resistance to B. sorokiniana, served as the material for this study. Eleven isolates of B. sorokiniana of various geographic origin, belonging to 4 pathotypes, were used for testing. The resistance of barley seedlings was assessed under controlled laboratory conditions, and that of adult plants under artificial infection pressure in the field. Responses to B. sorokiniana were scored using the 0–9 rating scale.Results and conclusions. Barley genotypes with race-specific resistance to the spot blotch causative agent were identified. The percentage of barley genotypes resistant to five isolates of B. sorokiniana pathotype 1 averaged 24.2%; two isolates of pathotype 3, 29.5%; three isolates of pathotype 7, 18.3%; and one isolate of pathotype 0, 37%. Barley accessions manifesting resistance in their seedlings, but susceptible in the phase of milk-wax ripeness, and vice versa, with seedling susceptibility and adult resistance, were identified. Six (6) barley genotypes showed seedling and adult resistance to pathotype 1, nine (9) to pathotype 3, and two (2) to pathotype 7. No barley accessions resistant to all isolates of the pathogen were found.

Establishment of an Efficient Screening Methods for Resistance of Chinese Cabbage to Clubroot Disease

Clubroot caused by <i>Plasmodiophora brassicae</i> is an important disease of crucifer crops worldwide. This study aimed to establish an efficient screening method to determine resistant cultivars of Chinese cabbage against <i>P. brassicae</i>. To do this, we investigated the virulence of seven <i>P. brassicae</i> isolates using seedlings of susceptible Chinese cabbage cultivar. The isolates exhibited different virulence in the plants and were divided into three groups based on their virulence. When we explored the disease occurrence in Chinese cabbage seedlings according to photoperiod after inoculation of <i>P. brassicae</i> and incubation temperature, the plants with all-day light showed higher disease severity than seedlings cultivated under 14 hr of light a day. The occurrence of clubroot disease was most severe at 25<sup>o</sup>C, followed by 20<sup>o</sup>C and 18<sup>o</sup>C, but the fresh weight of clubroot of the seedlings cultivated at 20<sup>o</sup>C was the highest, followed by plants grown at 25<sup>o</sup>C and 18<sup>o</sup>C. When the seedlings of two commercial resistant cultivars were inoculated with the mixed spore suspensions of two different pathotype isolates of <i>P. brassicae</i>, disease severity increased as the spore concentration of the susceptible <i>P. brassicae</i> isolate among the two strains increased, suggesting that the clubroot development by different pathotype isolates was independent and not influenced by each other. Taken together, our results provide a faster and more accurate screening methods to determine the resistance of Chinese cabbage against <i>P. brassicae</i>.

High Genetic Diversity and Antimicrobial Resistance in Escherichia coli Highlight Arapaima gigas (Pisces: Arapaimidae) as a Reservoir of Quinolone-Resistant Strains in Brazilian Amazon Rivers.

The increasing prevalence of multi-drug resistant (MDR) Escherichia coli in distinct ecological niches, comprising water sources and food-producing animals, such as fish species, has been widely reported. In the present study, quinolone-resistant E. coli isolates from Arapirama gigas, a major fish species in the Brazilian Amazon rivers and fish farms, were characterized regarding their antimicrobial susceptibility, virulence, and genetic diversity. A total of forty (40) specimens of A. gigas, including 20 farmed and 20 wild fish, were included. Thirty-four quinolone-resistant E. coli isolates were phenotypically tested by broth microdilution, while resistance and virulence genes were detected by PCR. Molecular epidemiology and genetic relatedness were analyzed by MLST and PFGE typing. The majority of isolates were classified as MDR and detected harboring blaCTX-M, qnrA and qnrB genes. Enterotoxigenic E. coli pathotype (ETEC) isolates were presented in low prevalence among farmed animals. MLST and PFGE genotyping revealed a wide genetic background, including the detection of internationally spread clones. The obtained data point out A. gigas as a reservoir in Brazilian Amazon aquatic ecosystems and warns of the interference of AMR strains in wildlife and environmental matrices.

Genomic structure and population genetic analysis of leaf spot disease, Ulocladium atrum-potato pathotype isolates

Genomic structure and population genetic analysis of leaf spot disease, <i>Ulocladium atrum</i>-potato pathotype isolates

Molecular characterisation of Pea seed borne mosaic poytvirus associated with apical rosette in field pea (Pisum sativum L.) in India

Symptoms of apical rosette were seen in field pea grown as winter season crop in India. Symptomatic leaves were processed for the identification of associated virus. The primers pair (PSbMV-F/PSbMV-R) targeting part of NIb gene of Pea seed borne mosaic potyvirus (PSbMV) was used in RT-PCR. The targeted fragment was successfully amplified cloned and sequenced. Sequencing of amplicons revealed it to be 795 bp long and identical to each other and hence only one was deposited to the NCBI database. Blast results of sequence showed it to be a portion of NIb region of the PSbMV and had 100–88.5% nt similarity with known isolates of the PSbMV. Phylogenetic analysis revealed that all the PSbMV isolates used group together. However, the PSbMV-IN:Knp isolate sub-clustered with the known PSbMV isolates of pathotype 1. This is the first report of the characterisation of an Indian isolate of PSbMV based on genomic sequence.

Identification of three closely linked loci conferring broad-spectrum Phytophthora sojae resistance in soybean variety Tosan-231.

A variable genomic region containing two Harosoy-derived loci related to Rps7 and one Nemashirazu-derived locus confers broad-spectrum Phytophthora sojae resistance in Tosan-231 and is useful for developing resistant cultivars. We investigated resistance to pathotypically variable Phytophthora sojae isolates in the soybean variety Tosan-231, which has broad-spectrum resistance. Mapping analysis using descendent lines from a cross between Shuurei and Tosan-231 demonstrated that a genomic region between SSR markers BARCSOYSSR_03_0209 and BARCSOYSSR_03_0385 (termed "Region T"), confers broad-spectrum resistance in Tosan-231 and contains three closely linked resistance loci. Inoculation tests with 20 P. sojae isolates of different pathotypes and simple sequence repeat (SSR) analysis of progenitors of Tosan-231 facilitated identification and characterization of Rps genes at the three resistance loci. Two resistance genes, RpsT1 and RpsT2, were found to be derived from Harosoy carrying Rps7. This result suggested two mutually exclusive possibilities: (1) either RpsT1 or RpsT2 is Rps7, and the other is a locally functional novel gene; (2) Rps7 is not a single gene but in fact comprises RpsT1 and RpsT2. The resistance locus containing RpsT3 is derived from Nemashirazu, in which Rps genes have remained poorly defined. Moreover, we identified two genomic regions with relatively high recombination frequencies on the basis of mapping information and proposed a strategy to readily assemble useful resistance genes in or around Region T.

Use of wild Pennisetum species for improving biotic and abiotic stress tolerance in pearl millet

AbstractPearl millet [Pennisetum glaucum (L.) R. Br.] is one of the world's hardiest warm‐season cereal crop cultivated for food and animal feed in the semi‐arid tropics of Asia and Africa. This crop faces terminal drought during rainy and flowering‐stage heat stress during summer seasons. Blast is emerging as a serious threat affecting its production and productivity in India. Using wild P. violaceum (Lam) Rich. and pearl millet cultivars, prebreeding populations were developed following backcross method. These populations were evaluated in target ecologies in India at three locations during the 2018 summer season for flowering‐stage heat stress and at two locations during the 2018 rainy season for terminal drought stress. A total 18 introgression lines (ILs) from Population (Pop) 3 exhibited improved seed set under high heat stress vs. the cultivated parent, whereas no IL was better than the cultivated parent in Pop 4. Under rainfed conditions at Hisar and Bawal, India, 19 ILs from Pop 3 and 16 ILs from Pop 4 showed significantly higher dry fodder yield than the cultivated parents. Further, screening of ILs for five diverse pathotype isolates—Pg 45, Pg 138, Pg 186, Pg 204, and Pg 232—of blast resulted in the identification of resistant ILs. Use of these promising ILs in breeding programs will assist in developing new varieties and hybrids with improved tolerance to biotic and abiotic stresses. The study indicated the genetic differences between the parents involved in crossing and also highlighted the importance of precise phenotyping of wild species for target trait prior to use in prebreeding work.

Comparative Genomics of Xanthomonas citri pv. citri A* Pathotype Reveals Three Distinct Clades with Varying Plasmid Distribution.

Citrus bacterial canker (CBC) is an important disease of citrus cultivars worldwide that causes blister-like lesions on host plants and leads to more severe symptoms such as plant defoliation and premature fruit drop. The causative agent, Xanthomonas citri pv. citri, exists as three pathotypes—A, A*, and Aw—which differ in their host range and elicited host response. To date, comparative analyses have been hampered by the lack of closed genomes for the A* pathotype. In this study, we sequenced and assembled six CBC isolates of pathotype A* using second- and third-generation sequencing technologies to produce complete, closed assemblies. Analysis of these genomes and reference A, A*, and Aw sequences revealed genetic groups within the A* pathotype. Investigation of accessory genomes revealed virulence factors, including type IV secretion systems and heavy metal resistance genes, differentiating the genetic groups. Genomic comparisons of closed genome assemblies also provided plasmid distribution information for the three genetic groups of A*. The genomes presented here complement existing closed genomes of A and Aw pathotypes that are publicly available and open opportunities to investigate the evolution of X. citri pv. citri and the virulence factors that contribute to this serious pathogen.

Co-Occurrence of Defoliating and Non-Defoliating Pathotypes of Verticillium Dahliae in Field-Grown Cotton Plants in New South Wales, Australia.

Verticillium wilt (VW) is a major constraint to cotton production in Australia and worldwide. The disease is caused by a soilborne fungus, Verticillium dahliae, a highly virulent pathogen on cotton. Commonly, V. dahliae is designated into two pathotypes: defoliating (D) and non-defoliating (ND), based on induced symptoms. In the previous two survey seasons between 2017 and 2019, stems with suspected VW were sampled for the confirmation of presence and distribution of D and ND pathotypes across New South Wales (NSW), Australia. A total of 151 and 84 VW-suspected stems sampled from the 2017/18 and 2018/19 seasons, respectively, were subjected to pathogen isolation. Of these, 94 and 57 stems were positive for V. dahliae; and 18 and 20 stems sampled respectively from the two seasons yielded the D pathotype isolates. Two stems from the 2017/18 season and one stem from 2018/19 season yielded both D and ND pathotype isolates. We also successfully demonstrated the co-infection of both pathotypes in pot trials, which was driven predominantly by either of the pathotypes, and appeared independent on vegetative growth, fecundity and spore germination traits. Our study is the first report of the natural co-occurrence of both D and ND pathotypes in same field-grown cotton plants in NSW, to which a challenge to the disease management will be discussed.

Structure of Polish isolates ofBipolaris sorokinianaand effect of different pathotypes on spot blotch severity of selected spring barley cultivars

Spot blotch of barley (Hordeum vulgare L.), caused by Bipolaris sorokiniana, is worldwide and economically one of the most important diseases. The structure of the B. sorokiniana population is not uniform. Within isolates of this species, there are strains that differ in virulence and aggressiveness. The aim of the study was to determine the variability of virulence within Polish isolates of B. sorokiniana and to test selected strains of this fungus terms of their pathogenicity in relation to different spring barley cultivars. The diversity of 70 Polish isolates of B. sorokiniana was determined based on the reaction of three spring barley test lines – Bowman, ND5883 and NDB12 with a certain susceptibility to infection by this pathogen and compared to three isolates of B. sorokiniana: ND93-1 classified to pathotype 0, ND85F – pathotype 1 and ND90Pr – pathotype 2. In the population of 70 isolates of B. sorokiniana, two pathotypes – 0 (14 isolates) and 1 (56 isolates) were identified. The mean values of leaf infection index evaluated for lines – Bowman, ND5883 and NDB12 in the case of B. sorokiniana isolates of pathotype 0 ranged: 17.08, 25.42 and 18.13, respectively, and in the case of B. sorokiniana isolates of pathotype 1: 15.57, 59.81 and 17.98, respectively. In the second experiment, the susceptibility of 8 spring barley cultivars to leaf infection by 10 selected isolates of B. sorokiniana (5 of pathotype 0 and 5 of pathotype 1) was tested. The mean value of leaf infection index calculated for analyzed cultivars in experimental combination with pathotype 0 isolates of B. sorokiniana was 1.56, and in the case of isolates of pathotype 1 was 16.58.

Morphological and molecular characterization of the strawberry black leaf spot pathogen referred to as the strawberry pathotype of Alternaria alternata

Abstract The remaining unclarified taxon among the seven known pathotypes of host-selective toxin (HST)-producing Alternaria alternata, namely, the strawberry pathotype (the strawberry black leaf spot pathogen), is taxonomically revised and re-described herein. According to our morphological observations, reference isolates of strawberry and Japanese pear pathotypes, which are toxic to leaves of Japanese pear ‘Nijisseiki’, have conidia that are formed in chains of 3–13, usually without lateral branches, after 7 d incubation on potato-carrot agar. The mean size of the conidia is 27–31 × 11–13 μm. Morphological characteristics of the examined isolates are identical to those of A. gaisen rather than A. alternata. A phylogenetic tree obtained by analysis of a combined dataset of ITS, gapdh, rpb2, tef1, Alt a 1, and endoPG sequences also strongly supports both pathotypes as one species, A. gaisen. We re-describe the fungus as A. gaisen Nagano ex Bokura and propose two formae speciales of the species, A. gaisen f. sp. fragariae producing AF-toxin and f. sp. pyri producing AK-toxin. The epitype specimen and ex-epitype culture of A. gaisen are newly designated.

Molecular Characterization of Australian Isolates of Puccinia graminis f. sp. tritici Supports Long-Term Clonality but also Reveals Cryptic Genetic Variation.

Long-term surveys of pathogenicity in Puccinia graminis f. sp. tritici in Australia have implicated mutation as a major source of virulence, at times leading to the demise of stem-rust-resistant wheat cultivars and substantial yield losses. Since 1925, these surveys have identified at least four occasions on which exotic isolates of P. graminis f. sp. tritici appeared in Australia, with each acting as a founding isolate that gave rise sequentially to derivative pathotypes via presumed single-step mutation. The current study examined the relationship between virulence and molecular patterns using simple-sequence repeat (SSR) markers on selected isolates of P. graminis f. sp. tritici collected in Australia during a 52-year period in order to propose an evolutionary pathway involving these isolates. Studies of SSR variability among this collection of isolates within a putative clonal lineage based on pathotype 21-0, first detected in 1954 (the "21/34 lineage"), provided compelling evidence of clonality over the 52-year period, coupled with single-step acquisition of virulence for resistance genes. It also supported the postulation that two triticale-attacking pathotypes (34-2,12 and 34-2,12,13) detected in the early 1980s were derived from pathotype 21-0 via stepwise sequential acquisition of virulence for Sr5, Sr11, Sr27, and then SrSatu. Some of the isolates examined that were regarded as members of the race 21/34 lineage based on pathogenicity differed significantly in their SSR genotypes, indicating that they may have originated from processes more complex than simple mutation. This included two isolates of pathotype 21-0, which were collected in 1994 and 2006. Given that sexual recombination in P. graminis is rare or absent in Australia, the cryptic complexity observed could indicate that one or more of these isolates arose as a consequence of asexual recombination.

Development of simple sequence repeat markers for the classification of the clubroot pathogen Plasmodiophora brassicae

Clubroot disease caused by Plasmodiophora brassicae is one of the most serious diseases in cruciferous crops. To classify isolates, we developed simple sequence repeat (SSR) markers for P. brassicae. Twenty-four Japanese isolates were used in this study: 12 isolates of an unknown pathotype from the Kyoto Prefecture, as well as 12 isolates of known pathotypes, including three single-spore lines. From the 12 isolates from Kyoto Prefecture, 11 were classified into either pathotype 2 (three isolates) or 4 (eight isolates). We designed 23 SSR markers based on the P. brassicae genome, of which 11 markers from intergenic regions showed polymorphisms in the 24 isolates. Many haploid isolates belonging to pathotypes 2 and 4 were monomorphic, and typical alleles were detected in some isolates not belonging to pathotype 4. Two bands were detected for eight SSR loci in five isolates, indicating that different genotypes were mixed in these isolates. We constructed a phylogram based on the 11 polymorphic SSRs. Pathotypes 2 and 4 formed a cluster, from which pathotypes 3 and 1 were successively placed. These results strongly suggest a close genetic relationship between isolates in pathotypes 2 and 4, consistent with our finding that isolates in these two pathotypes were found at one collection site. In combination with pathotype classification and other marker systems, the SSR markers can be used for more detailed analyses to improve the control of clubroot disease.

Hybrid Shiga Toxin-Producing and Enterotoxigenic Escherichia sp. Cryptic Lineage 1 Strain 7v Harbors a Hybrid Plasmid.

Hybrid isolates of Shiga toxin-producing Escherichia coli (STEC) and enterotoxigenic E. coli (ETEC) encoding heat-stable enterotoxin (ST) are being reported with increasing frequency from a variety of sources. However, information regarding the plasmids that these strains harbor is scarce. In this study, we sequence and characterize a plasmid, p7v, from the STEC/ETEC hybrid strain 7v. Whole-genome phylogenetic analyses of STEC/ETEC hybrid strains and prototype E. coli isolates of other pathotypes placed 7v in the Escherichia sp. cryptic lineage 1 (CL1) clade. The complete plasmid, p7v, was determined to be 229,275 bp and encodes putative virulence factors that are typically carried on STEC plasmids as well as those often carried on ETEC plasmids, indicating that the hybrid nature of the strain extends beyond merely encoding the two toxins. Plasmid p7v carries two copies of sta with identical sequences, which were discovered to be divergent from the sta sequences found in the prototype human ETEC strains. Using a nomenclature scheme based on a phylogeny constructed from sta and stb sequences, the sta encoded on p7v is designated STa4. In silico analysis determined that p7v also encodes the K88 fimbria, a colonization factor usually associated with porcine ETEC plasmids. The p7v sequence and the presence of plasmid-encoded virulence factors are compared to those of other STEC/ETEC CL1 hybrid genomes and reveal gene acquisition/loss at the strain level. In addition, the interrogation of 24 STEC/ETEC hybrid genomes for identification of plasmid replicons, colonization factors, Stx and ST subtypes, and other plasmid-encoded virulence genes highlights the diversity of these hybrid strains. Hybrid Shiga toxin-producing Escherichia coli/enterotoxigenic Escherichia coli (STEC/ETEC) strains, which have been isolated from environmental, animal, and human clinical samples, may represent an emerging threat as food-borne pathogens. Characterization of these strains is important for assessing virulence potential, aiding in the development of pathogen detection methods, and understanding how the hybrid strains evolve to potentially have a greater impact on public health. This study represents, to our knowledge, both the first characterization of a closed plasmid sequence from a STEC/ETEC hybrid strain and the most comprehensive phylogenetic analysis of available STEC/ETEC hybrid genomes to date. The results demonstrate how the mobility of plasmid-associated virulence genes has resulted in the creation of a diverse plasmid repertoire within the STEC/ETEC hybrid strains.

The gene Cr811 is present exclusively in pathotype 5 and new emerged pathotypes of the clubroot pathogen Plasmodiophora brassicae

This study was conducted with the objective of finding genetic marker(s) to differentiate pathotypes of the clubroot pathogen Plasmodiophora brassicae. Ideally, such markers should be used as a diagnostic tool to identify or predict certain pathotypes. By using PCR with gene-specific primers, 117 non-housekeeping P. brassicae genes were investigated for their presence/absence in isolates representing pathotypes 2, 3, 5, 6 or 8 (Williams’ system), and in new strains of the pathogen recently identified from Alberta, Canada, which are highly virulent on clubroot resistant canola (Brassica napus) cultivars. One gene, named Cr811, was present in isolates of pathotype 5 and in a new strain of P. brassicae that also is classified as pathotype 5 on the system of Williams, but causes severe clubroot on resistant canola. Three additional newly identified virulent populations, similar to pathotype 3, also were tested and found to carry Cr811. In contrast, the Cr811 gene was absent in all isolates representing the original pathotypes 2, 3, 6 and 8. Quantitative real-time PCR analysis indicated greater copy numbers of Cr811 in the new virulent pathotype 3-like and pathotype 5-like populations versus the original pathotype 5, indicating a potential method to identify new pathotypes of P. brassicae before the breakdown of resistance could be detected in a canola crop. The association of Cr811 with infection by P. brassicae of previously resistant canola cultivars, as revealed by qPCR analysis, suggests that Cr811 plays an important role in the interaction between host resistance and P. brassicae pathogenicity.

Production of pure genotype isolates of Plasmodiophora brassicae Wor. - comparison of inoculations with root hairs containing single sporangiosori or with single resting spores

Single spore derived isolates of Plasmodiophora brassicae are difficult to be generated due to its biotrophic life style. Two methods to produce pure pathotype isolates of P. brassicae were compared. A new technique for the inoculation of Brassica seedlings with single root hairs infected by P. brassicae is described, which is taking advantage of the multiplication of P. brassicae during the first infection cycle in root hairs. Ten single spore derived isolates from 328 single sporangiosorus inoculations were produced using different populations of P. brassicae. To compare success rates inoculations with single resting spores were also made. From 125 inoculations with single resting spores only one single spore derived isolate was achieved. The root hair inoculation method was more practicable than most hitherto reported methods and offers a reasonable efficacy for the production of single spore derived isolates.

Alternaria alternata apple pathotype (A. mali) causes black spot of European pear

A disease caused by Alternaria alternata occurred on the leaves of European pear cultivar Le Lectier in Niigata Prefecture, Japan, and was named black spot of European pear. In conidial inoculation tests, the causal pathogen induced not only small black lesions on the leaves of European pear cultivar Le Lectier, but severe lesions on the leaves of apple cultivar Red Gold, which is susceptible to the A. alternata apple pathotype (previously called A. mali) causing Alternaria blotch of apple. Interestingly, the apple pathotype isolate showed the same pathogenicity as the European pear pathogen. HPLC analysis of the culture filtrates revealed that A. alternata causing black spot of European pear produced AM-toxin I, known as a host-specific toxin of the A. alternata apple pathotype. AM-toxin I induced veinal necrosis on leaves of Le Lectier and General Leclerc cultivars, both susceptible to the European pear pathogen, at 5 × 10−7 M and 10−6 M respectively, but did not affect leaves of resistant cultivars at 10−4 M. PCR analysis with primers that specifically amplify the AM-toxin synthetase gene detected the product of expected size in the pathogen. These results indicate that A. alternata causing black spot of European pear is identical to that causing Alternaria blotch of apple. This is the first report of European pear disease caused by the A. alternata apple pathotype. This study provides a multiplex PCR protocol, which could serve as a useful tool, for the epidemiological survey of these two diseases in European pear and apple orchards.

Protection provided by Rispens CVI988 vaccine against Marek's disease virus isolates of different pathotypes and early prediction of vaccine take and MD outcome

ABSTRACTWe tested the level of protection provided by the Rispens CVI988 (Rispens) vaccine against challenge with a virulent Marek's disease virus (MDV) pathotype (vMDV) and a very virulent pathotype (vvMDV) and the accuracy of a range of predictive measures of Marek's disease (MD) incidence and vaccine take. Commercial layer chicks (n = 236) were vaccinated (or not) with 4000 plaque-forming units (pfu) of Rispens vaccine at hatch and challenged (or not) with 500 pfu of each challenge virus five days post vaccination. The vvMDV pathotype FT158 induced higher MD incidence (65%) and mortality (33%) when compared with the vMDV pathotype MPF57 (39% and 8%, respectively). The protective index provided by the Rispens vaccine against FT158 (61%) did not differ significantly from that against MPF57 (66%). This provides additional evidence that protection provided by the Rispens vaccine is not influenced by pathotype determined in studies using vaccines of other Mardivirus species. The challenge viruses did not differ in MDV or Rispens viral load in spleen at 14 dpc (days post challenge) determined by specific quantitative polymerase chain reaction test. MDV load in peripheral blood leucocytes at 7 and 14 dpc, splenocytes at 14 dpc, feather cells at 14 and 21 dpc and isolator dust at 21 dpc were significant early indicators of subsequent MD incidence to 56 dpc. These are potentially useful as the sampling can be carried out well before the onset of MD and some measures are non-invasive. The Rispens viral load in both invasive and non-invasive samples was more useful as a measure of vaccine take.

Characterization of a new partitivirus strain in Verticillium dahliae provides further evidence of the spread of the highly virulent defoliating pathotype through new introductions

The soilborne pathogen Verticillium dahliae , causal agent of Verticillium wilt, has a worldwide distribution and many hosts of agronomic value. The worldwide spread of a highly virulent defoliating (D) pathotype has greatly increased the threat posed by V. dahliae in olive trees. For effective disease management, it is important to know if the D pathotype is spreading long distances from contaminated material, or if D pathotype isolates may have originated locally from native V. dahliae populations several times. We identified a double-stranded RNA mycovirus in an olive D pathotype isolate from Turkey. Sequencing and phylogenetic analysis clustered the virus with members of the family Partitiviridae . The virus was most similar to a partitivirus previously identified in a V. dahliae isolate from cotton in China (VdPV1), with sequence identities of 94% and 91% at the nucleotide level for RNA1 and RNA2, respectively. The virus therefore corresponded to a strain of the established species, and we designated it VdPV1-ol (VdPV1 from olive). The identification of the same viral species in these two fungal isolates from geographically distant origins provides evidence of their relationships, supporting the hypothesis of long-distance movement of V. dahliae isolates.

Improved Method to Increase Conidia Production from Isolates of Different Pathotypes of Citrus Scab Pathogen Elsinoe spp.

Improved Method to Increase Conidia Production from Isolates of Different Pathotypes of Citrus Scab Pathogen Elsinoe spp.