Iron-rich Soil Research Articles

Stimulating Acidimicrobium sp. Strain A6 in iron-rich, acidic sediments from AFFF-impacted sites for PFAS defluorination

Per- and polyfluoroalkyl substances (PFAS) are persistent and bioaccumulative contaminants that are widely used in industrial applications and consumer products and pose significant risks to ecosystems and human health. Acidimicrobium sp. Strain A6 (A6), which is common in acidic, and iron rich soils and sediments is capable of both anaerobic ammonium (NH4+) oxidation under iron reduction (Feammox) and defluorination of perfluorinated alkyl substances, such as perfluoroalkyl acids (PFAAs). This study investigates the potential for biostimulating A6 via the supply of NH4+ and ferric iron (Fe(III)) with the goal of defluorinating PFAAs. Sediment samples from acidic, iron-rich, AFFF (aqueous film forming foam) impacted sites were collected and incubated with added Fe(III) and NH4+. Quantitative PCR was used to track A6 numbers as well as dehalogenase and F− ion transporter genes during these incubations; changes in the microbial community structure were tracked through 16S rRNA gene sequencing. The findings reveal that the addition of Fe(III) and NH4+ stimulated the Feammox reaction and A6 growth and enhanced the degradation of perfluorooctanoic acid (PFOA) and perfluorooctane sulfonic acid (PFOS). Results also show a significant presence and activity of the above-mentioned genes in these incubations. The insights gained from this study could inform bioremediation strategies for PFAS-contaminated environments, especially in geochemical settings that favor the presence of A6.

Fe-rich X-ray amorphous material records past climate and persistence of water on Mars

X-ray amorphous material comprises 15-73 wt.% of sedimentary rocks and eolian sediments in Gale crater. This material is variably siliceous and iron rich but aluminum poor. The presence of volatiles is consistent with the existence of incipient weathering products. To better understand the implications of this material for past aqueous conditions on Mars, here we investigate X-ray amorphous material formation and longevity within terrestrial iron rich soils with varying ages and environmental conditions using bulk and selective dissolution methods, X-ray diffraction, and transmission electron microscopy. Results indicate that in situ aqueous alteration is required to concentrate iron into clay-size fraction material. Cooler climates promote the formation and persistence of X-ray amorphous material whereas warmer climates promote the formation of crystalline secondary phases. Iron rich X-ray amorphous material formation and persistence on Mars are therefore consistent with past cool and relatively wet environments followed by long-term cold and dry conditions.

Iron toxicity in lowland rice influenced by application of high potassic fertilizer with suitable cultivars enhanced productivity and climate resilience

Iron poisoning in low-land rice in India develops gradually and is primarily caused by anaerobic conditions in submerged rice fields. A high concentration of ferrous ions in the soil solution disrupts the potassium balance in rice plants, leading to adverse effects on crop growth. In the 2021–2022 period, an experiment was conducted in non-saline, iron-rich soil (pH–4.82, Fe–458.6 mg kg–1) to mitigate iron toxicity in rice cultivars through potassium nutrition. The experiment involved 4 potassium application doses (K-40, K-80, K-100 and K-120) and 32 rice cultivars, replicated twice using a split-plot design. Higher potassium doses led to increased tiller counts, but gradually decreased root length. Notably, cultivars like Kanchan, Indravati, Jagabandhu, Santepheap and Salibahan exhibited the lowest iron concentration in their grains compared to susceptible cultivars. Administering K-120 resulted in a yield increase of over 36.70 q ha-1. Grain yield increased with higher K dosage, although it did not affect total iron content. However, K doses did influence specific fractions of iron in the soil. Hence, potassium nutrition appears crucial in managing iron toxicity in inceptisols, especially when paired with cultivars tolerant to iron toxicity.

Soil-plant-gall relationships: from gall development to ecological patterns.

The adaptive nature of the galler habit has been tentatively explained by the nutrition, microenvironment, and enemy hypotheses. Soil attributes have direct relationships with these three hypotheses at the cellular and macroecological scales, but their influence has been restricted previously to effects on the nutritional status of the host plant on gall richness and abundance. Herein, we discuss the ionome patterns within gall tissues and their significance for gall development, physiology, structure, and for the nutrition of the gallers. Previous ecological and chemical quantification focused extensively on nitrogen and carbon contents, evoking the carbon-nutrient defence hypothesis as an explanation for establishing the plant-gall interaction. Different elements are involved in cell wall composition dynamics, antioxidant activity, and regulation of plant-gall water dynamics. An overview of the different soil-plant-gall relationships highlights the complexity of the nutritional requirements of gallers, which are strongly influenced by environmental soil traits. Soil and plant chemical profiles interact to determine the outcome of plant-herbivore interactions and need to be addressed by considering not only the soil features and galler nutrition but also the host plant's physiological traits. The quantitative and qualitative results for iron metabolism in gall tissues, as well as the roles of iron as an essential element in the physiology and reproduction of gallers suggest that it may represent a key nutritional resource, aligning with the nutrition hypothesis, and providing an integrative explanation for higher gall diversity in iron-rich soils.

Effects of low-molecular-weight organic acids on the transformation and phosphate retention of iron (hydr)oxides

The retention and mobilization of phosphate in soils are closely associated with the adsorption of iron (hydr)oxides and root exudation of low-molecular-weight organic acids (LMWOAs). This study investigated the role of LMWOAs in phosphate mobilization under incubation and field conditions. LMWOAs-mediated iron (hydr)oxide transformation and phosphate adsorption experiments revealed that the presence of LMWOAs decreased the phosphate adsorption capacity of iron (hydr)oxides by up to ~74 % due to the competition effect, while LMWOAs-induced iron mineral transformation resulted in an approximately six-fold increase in phosphate retention by decreasing the crystallinity and increasing the surface reactivity. Root simulation in rhizobox experiments demonstrated that LMWOAs can alter the contents of different extractable phosphate species and iron components, leading to 10 % ~ 30 % decreases in available phosphate in the near root region of two tested soils. Field experiments showed that crop covering between mango tree rows promoted the exudation of LMWOAs from mango roots. In addition, crop covering increased the contents of total phosphate and available phosphate by 9.08 % ~ 61.20 % and 34.33 % ~ 147.33 % in the rhizosphere soils of mango trees, respectively. These findings bridge the microscale and field scale to understand the delicate LMWOAs-mediated balance between the retention and mobilization of phosphate on iron (hydr)oxide surface, thereby providing important implications for mitigating the low utilization efficiency of phosphate in iron-rich soils.

A New Perspective on the Applicability of Diffuse Reflectance Spectroscopy for Determining the Hematite Content of Fe-Rich Soils in the Tropical Margins of China

Hematite and goethite are widely occurring chromogenic iron oxides in soils and sediments that are sensitive to climatic dry/wet shifts. However, only by accurately quantifying the content or ratio of hematite and goethite can they be applied reliably to palaeoclimate reconstruction. Compared to the Loess Plateau of China, hematite in the soils of southern China has not been sufficiently studied. We used diffuse reflectance spectroscopy (abbreviation DRS, including the first-derivative curves and the second-derivative curves of the Kubelka–Munk remission functions), combined with ignition at 950 °C, and X-ray fluorescence (XRF) to quantify the hematite content of four tropical-margin iron-rich soil profiles with different matrix compositions in the Leizhou Peninsula, China. We also examined the application of hematite quantification parameters in soils with different matrix compositions under the same climatic conditions. Our main findings are as follows: (i) DRS first-derivative curves can reflect the presence of goethite and hematite in soils, and their relative contents can be compared within the same profile. (ii) The second-derivative curve of the Kubelka–Munk remission functions can reflect the relative proportions of goethite and hematite and provide information about the degree of Al substitution. (iii) Combined with calibration equations, soil redness can reliably quantify the hematite content, but it is necessary to consider the effect of mucilage envelopes in the process of hematite formation. Additionally, we summarize various methods used for quantifying hematite, and the influence of soil matrix compositions, with the aim of providing a reference for hematite quantification elsewhere. We also propose a new indicator (ΔHmRed/HmRed) to help detect iron hydroxide/iron oxide changes in soils.

Unveiling a Technosol-based remediation approach for enhancing plant growth in an iron-rich acidic mine soil from the Rio Tinto Mars analog site

This paper explores the potential of Technosols made from non-hazardous industrial wastes as a sustainable solution for highly acidic iron-rich soils at the Rio Tinto mining site (Spain), a terrestrial Mars analog. These mine soils exhibit extreme acidity (pHH2O = 2.1–3.0), low nutrient availability (non-acid cation saturation < 20 %), and high levels of Pb (3420 mg kg−1), Cu (504 mg kg−1), Zn (415 mg kg−1), and As (319 mg kg−1), hindering plant growth and ecosystem restoration. To address these challenges, the study systematically analyzed selected waste materials, formulated them into Technosols, and conducted a four-month pot trial to evaluate the growth of Brassica juncea under greenhouse conditions. Technosols were tailored by adding varying weight percentages of waste amendments into the mine Technosol, specifically 10 %, 25 %, and 50 %. The waste amendments comprised a blend of organic waste (water clarification sludge, WCS) and inorganic wastes (white steel slag, WSS; and furnace iron slag, FIS). The formulations included: (T0) exclusively mine Technosol (control); (T1) 60 % WCS + 40 % WSS; (T2) 60 % WCS + 40 % FIS; and (T3) 50 % WCS + 16.66 % WSS + 33.33 % FIS. The analyses covered leachate quality, soil pore water chemistry, and plant response (germination and survival rates, plant height, and leaf number). Results revealed a significant reduction in leachable contaminant concentrations, with Pb (26.16 mg kg−1), Zn (4.94 mg kg−1), and Cu (2.29 mg kg−1) dropping to negligible levels and shifting towards less toxic species. These changes improved soil conditions, promoting seed germination and seedling growth. Among the formulations tested, Technosol T1 showed promise in overcoming mine soil limitations, enhancing plant adaptation, buffering against acidification, and stabilizing contaminants through precipitation and adsorption mechanisms. The paper stresses the importance of tailoring waste amendments to specific soil conditions, and highlights the broader implications of the Technosol approach, such as waste valorization, soil stabilization, and insights for Brassica juncea growth in extreme environments, including Martian soil simulants.

Visible and near-infrared spectral results of Chang’E-5 surficial and subsurface soils

Aims. Studies on high-resolution and high-precision laboratory reflectance spectra of the Moon have historically been restricted to the analysis of old Apollo samples (&gt;3.0 Ga). In contrast, studies of young lunar soils have exclusively relied on the analysis of remote sensing spectra. In this study, we present the results of a laboratory spectral investigation of young lunar soils (~2.0 Ga) obtained by the Chang’E-5 (CE-5) mission. Methods. We analyzed surficial and subsurface soils collected through scooped and drilled sampling methods. The laboratory reflectance spectra of the CE-5 soils were compared with those of Apollo soils and orbital spectra. Two methods were employed for maturity inversion. The relationship between the UV-vis color and TiO2 content of young basalts was also investigated. Results. The CE-5 samples exhibit much fresher spectral features, including higher reflectance, deeper absorption depths, and a smaller visible and near-infrared continuum slope (VNCS), compared to pristine regolith. The subsurface soils sampled from a depth of approximately 10 cm exhibit a slightly fresher spectral feature compared to the surficial soils. Our comparison revealed a rapid rate of space weathering at the lunar surface compared to the vertical overturn. Compared to older iron-rich soils, the CE-5 soils have a larger reflectance but similar UV-vis ratios. The UV-vis ratio alone could not accurately predict the TiO2 content of all mare basalts. The CE-5 samples provide a new ground truth for estimating the TiO2 content of young lunar basalts, which have the largest uncertainty in TiO2 content, as estimated from spectral parameters. We find that the samples returned by the CE-5 mission represent disturbed soils and that they exhibit significantly fresher characteristics compared to pristine regolith, a fact that should be kept in mind when using samples as ground truth for remote sensing research.

Face-dependent phosphate speciation on goethite: CD-MUSIC modeling and ATR-FTIR/2D-COS study

Understanding the face-dependent phosphate adsorption mechanisms and their variations with environmental conditions is of great significance for revealing phosphate adsorption mechanisms on various goethites and predicting phosphorus speciation in iron-rich soils. In this study, micro- (MicroGoe) and nano-sized goethite (NanoGoe) were synthesized and used to investigate the face-dependent adsorption behaviors of proton and phosphate on goethite by combining the charge distribution-multisite surface complexation (CD-MUSIC) model and attenuated total reflectance Fourier transform infrared (ATR-FTIR). The results demonstrated that MicroGoe had a higher charge density and phosphate adsorption capacity than NanoGoe, which could be attributed to the higher site density of ≡FeOH−0.5 and inner-layer capacitance arising from a higher proportion of capping face and rougher surface of MicroGoe. The logKH of ≡FeOH−0.5 on the main and capping face was 8.2 and 8.9, respectively. Three types of monodentate mononuclear phosphate complexes in different protonated states were identified, along with the non-protonated bidentate complex. Protonated monodentate complexes were formed at relatively low pH and high surface loadings, whereas non-protonated complexes were the predominant species at intermediate to high pH. MicroGoe had a higher percentage of monodentate complexes than NanoGoe, and both goethites had considerably lower phosphate adsorption on the capping face than on the main face. The results provide valuable insights into the interfacial reactivity of goethite prepared with various methods and facilitate further prediction of phosphorus speciation and availability in iron-rich soils.

Defluorination of PFAS by Acidimicrobium sp. strain A6 and potential applications for remediation.

Acidimicrobium sp. strain A6 is a recently discovered autotrophic bacterium that is capable of oxidizing ammonium while reducing ferric iron and is relatively common in acidic iron-rich soils. The genome of Acidimicrobium sp. strain A6 contains sequences for several reductive dehalogenases, including a gene for a previously unreported reductive dehalogenase, rdhA. Incubations of Acidimicrobium sp. strain A6 in the presence of perfluorinated substances, such as PFOA (perfluorooctanoic acid, C8HF15O2) or PFOS (perfluorooctane sulfonic acid, C8HF17O3S), have shown that fluoride, as well as shorter carbon chain PFAAs (perfluoroalkyl acids), are being produced, and the rdhA gene is expressed during these incubations. Results from initial gene knockout experiments indicate that the enzyme associated with the rdhA gene plays a key role in the PFAS defluorination by Acidimicrobium sp. strain A6. Experiments focusing on the defluorination kinetics by Acidimicrobium sp. strain A6 show that the defluorination kinetics are proportional to the amount of ammonium oxidized. To explore potential applications for PFAS bioremediation, PFAS-contaminated biosolids were augmented with Fe(III) and Acidimicrobium sp. strain A6, resulting in PFAS degradation. Since the high demand of Fe(III) makes growing Acidimicrobium sp. strain A6 in conventional rectors challenging, and since Acidimicrobium sp. strain A6 was shown to be electrogenic, it was grown in the absence of Fe(III) in microbial electrolysis cells, where it did oxidize ammonium and degraded PFAS.

Croton carajasensis, a new species from Serra dos Carajás, Pará, Brazilian Amazon

During a floristic survey of Euphorbiaceae in cangas (areas of iron-rich soils) of the Serra dos Carajás (Pará State, Brazil), a new species of Euphorbiaceae was found. Croton carajasensis is only known from cangas vegetation and it is herein described and illustrated. The relationships of the new taxon with the most morphologically similar species (C. abaitensis, C. adamantinus, C. harleyi and C. ramosissimus) and its infrageneric position are discussed. We also include a distribution map, comments on habitat, flowering, fruiting, and a preliminary assessment of the species’ conservation status.

RNA Hydrolysis at Mineral-Water Interfaces.

As an essential biomolecule for life, RNA is ubiquitous across environmental systems where it plays a central role in biogeochemical processes and emerging technologies. The persistence of RNA in soils and sediments is thought to be limited by enzymatic or microbial degradation, which occurs on timescales that are orders of magnitude faster than known abiotic pathways. Herein, we unveil a previously unreported abiotic pathway by which RNA rapidly hydrolyzes on the timescale of hours upon adsorption to iron (oxyhydr)oxide minerals such as goethite (α-FeOOH). The hydrolysis products were consistent with iron present in the minerals acting as a Lewis acid to accelerate sequence-independent hydrolysis of phosphodiester bonds comprising the RNA backbone. In contrast to acid- or base-catalyzed RNA hydrolysis in solution, mineral-catalyzed hydrolysis was fastest at circumneutral pH, which allowed for both sufficient RNA adsorption and hydroxide concentration. In addition to goethite, we observed that RNA hydrolysis was also catalyzed by hematite (α-Fe2O3) but not by aluminum-containing minerals (e.g., montmorillonite). Given the extensive adsorption of nucleic acids to environmental surfaces, we anticipate previously overlooked mineral-catalyzed hydrolysis of RNA may be prevalent particularly in iron-rich soils and sediments, which must be considered across biogeochemical applications of nucleic acid analysis in environmental systems.

The impact of alternating drainage and inundation cycles on geochemistry and microbiology of intact peat cores

The rewetting of degraded peatlands has been adopted as a method to address climate change. Concerns have been raised about the effects of peat inundation and drying cycles, in more extreme climate events, on the potential release of nitrogen (N) species, in particular ammonium (NH4-N), once rewetted, as well as the physico-chemical and biological properties of the peat. This study used intact peat cores to measure the impact of two different cycles of peat inundation and drying (1 month and 2 month) over a total study duration of 56 weeks on the (1) NH4-N, nitrate-N (NO3-N) and dissolved reactive phosphorus (DRP) in the soil pore water; (2) microbial community structure; (3) physico-chemical properties of the peat; and (4) the structure of the peat, and therefore its ability to mitigate flood risks and storm surges. The study found that rewetted cores released NO3-N in the pore water up to a concentration of 6.25 mg L−1, but had no appreciable impact on NH4-N, which remained below 1.7 mg L−1 over the study duration. DRP moved quickly though the upper layers of the cores, but physico-chemical analysis suggested it was adsorbed to more iron-rich soil, which was present at depths below 0.4 m in the cores. Time intervals between inundation produced no significant difference on the forms of inorganic N released, nor did it compact the soil or change the microbial community structure. The depth of the water table, however, had a significant impact on inorganic N release, particularly NO3-N, which indicates that this N species, and not NH4-N, may be problematic in rewetted peatlands.

Characterization of the mural blue paintings in ornamental motif of Ali Qapu palace in Isfahan, Iran, using spectroscopic and microscopic methods (a case study)

This study aimed to investigate the painting technique and identify the blue pigments used in the ornamental motif of mural paintings of Ali Qapu palace as the seat of rule of Shah Abbas I Safavid and part of Naghsh-e Jahan square world heritage site in Isfahan. For this investigation, five samples collected from the murals located at different sections of the palace were studied by polarized light microscopy (PLM), Fourier-transform infrared spectroscopy (FTIR), Raman spectroscopy, and energy-dispersive X-ray spectroscopy (EDS). Also, the Fourier self-deconvolution was applied to the FTIR spectra of chloroform extract of the paint layer to identify the type of binder used in the painting. The results showed that the blue pigment used in all five samples is natural ultramarine (lapis lazuli). In four of the five samples, huntite has been used as the filler in the priming layer. However, the results suggest that huntite has also been combined with ultramarine to create lighter tonalities. The findings indicate the use of three different priming methods in creating the ornamental motif murals: creating a priming layer with iron-rich soil, creating a priming layer with huntite as the filler, and placing an organic layer underneath the huntite priming layer. This shows the variety of priming techniques used in creating the ornamental motif murals of Ali Qapu. Furthermore, FTIR results indicate the possible use of the tempera and oil technique in the murals.

Siderophores, a potential phosphate solubilizer from the endophyte Streptomyces sp. CoT10, improved phosphorus mobilization for host plant growth and rhizosphere modulation

Available phosphorus (AP) deficiency in soil is an important limiting factor in agricultural and forestry production. Thus, microbes with high P mobilization capacity are of great concern, especially for acidic soil where most P is fixed by Fe. Camellia oleifera is a typical acidic soil–planted oil crop with a high status in forestry economic systems in China. In this study, Streptomyces sp. CoT10 was screened and identified from C. oleifera endophytes. CoT10 could effectively mobilize different P resources, particularly showing a high solubility of 72.49 mg L−1 for FePO4, and was prominent in the production of different siderophores. Here, we initially assumed and confirmed that the Fe–P mobilization function of CoT10 was directly mediated by its siderophores. Application of CoT10 in C. oleifera could benefit P fraction transformation by mobilizing insoluble P and Fe, thus improving 15.35% AP content in soil and promoting plant growth with high P and Fe acquisition. In addition, CoT10 inoculation improved microbial diversity, with the proportions of some dominant groups, such as Actinobacteria, Proteobacteria, and Firmicutes, obviously enriched by 21.32%, 7.93%, and 38.95%, respectively. In addition, redundancy analysis (RDA), network analysis and functional prediction indicated that CoT10 inoculation improved the microbial interactions in C. oleifera rhizosphere soil and balanced the soil microbial P- and Fe-related functional roles. The results of Streptomyces sp. CoT10 and its siderophores provide a valuable approach to regulate P mobilization in iron-rich soil for the sustainable and eco-friendly development of plant-related industries.

Cross-species transcriptomes reveal species-specific and shared molecular adaptations for plants development on iron-rich rocky outcrops soils

BackgroundCanga is the Brazilian term for the savanna-like vegetation harboring several endemic species on iron-rich rocky outcrops, usually considered for mining activities. Parkia platycephala Benth. and Stryphnodendron pulcherrimum (Willd.) Hochr. naturally occur in the cangas of Serra dos Carajás (eastern Amazonia, Brazil) and the surrounding forest, indicating high phenotypic plasticity. The morphological and physiological mechanisms of the plants’ establishment in the canga environment are well studied, but the molecular adaptative responses are still unknown. To understand these adaptative responses, we aimed to identify molecular mechanisms that allow the establishment of these plants in the canga environment.ResultsPlants were grown in canga and forest substrates collected in the Carajás Mineral Province. RNA was extracted from pooled leaf tissue, and RNA-seq paired-end reads were assembled into representative transcriptomes for P. platycephala and S. pulcherrimum containing 31,728 and 31,311 primary transcripts, respectively. We identified both species-specific and core molecular responses in plants grown in the canga substrate using differential expression analyses. In the species-specific analysis, we identified 1,112 and 838 differentially expressed genes for P. platycephala and S. pulcherrimum, respectively. Enrichment analyses showed that unique biological processes and metabolic pathways were affected for each species. Comparative differential expression analysis was based on shared single-copy orthologs. The overall pattern of ortholog expression was species-specific. Even so, we identified almost 300 altered genes between plants in canga and forest substrates with conserved responses in the two species. The genes were functionally associated with the response to light stimulus and the circadian rhythm pathway.ConclusionsPlants possess species-specific adaptative responses to cope with the substrates. Our results also suggest that plants adapted to both canga and forest environments can adjust the circadian rhythm in a substrate-dependent manner. The circadian clock gene modulation might be a central mechanism regulating the plants’ development in the canga substrate in the studied legume species. The mechanism may be shared as a common mechanism to abiotic stress compensation in other native species.

Arsenic and nitrate remediation by isolated FeOB strains coupled with additional ferrous iron in the iron-deficient arid soils

Remediation of As(III) by use of Fe(II) oxidation bacteria (FeOB) in iron-rich soils has been reported, but seldom used in the iron-deficient soil of arid areas. This study was aimed at selecting native bacterial strains to remediate As pollution in arid soils, coupled with the addition of Fe(II). The used methods included: The selection of two FeOB strains; XRD for solid phase identification based on peaks; SEM with EDS for morphology identification of newly formed minerals with chemical compositions; XPS for surface chemistry of the minerals; FTIR for functional groups of precipitates and 3DEEM for EPS determination, etc. The results were as follows: Sharp decrement curves of As(III) and NO3− with Fe(II) and total Fe contents and increment of NO2−; NH4+ fluctuating during the experimental period of 11 days; and precipitation of Fe(III) hydroxides together with As(III) with broken FeOBs due to encrustation in the SEM scan. It was concluded that two selected Pseudomonas strains have NAFO functionality by addition of iron as iron reduction-oxidation pair in the arid soil, further potentially fixing NH4+ while As(III) can be effectively remediated through the FeOB participation in forms of adsorption and co-precipitation of Fe(OH)3 through an oxidation of Fe(II) process.

Effects of different carbon sources on methane production and the methanogenic communities in iron rich flooded paddy soil

Various carbon sources as substrates and electron donors can produce methane via different metabolic pathways. In particular, the methane produced by rice cultivation has a severe impact on climate change. However, how Fe3+, the most abundant oxide in paddy soil, mediates the methanogenesis of different carbon sources is unknown. In this study, we investigated the effect of four carbon sources with different chain lengths (acetate, glucose, nonanoate, and starch) on CH4 production and associated methanogens in iron-rich paddy soil over 90 days of anaerobic incubation. We found that glucose and starch were the more preferential substrates for liberating methane compared to acetate, and the rate was also faster. Nonanoate was unable to support methane production. Methanosarcinales and Methanobacteriales were the most predominant methanogenic archaea as shown by 16S rRNA gene sequencing, though their abundance changed over time. Additionally, a significantly higher content of iron-reducing bacteria was observed in the glucose and starch treatments, and it was significantly positively correlated with the copy number of the methanogenic mcrA gene. Together, we confirmed the methanogenic capacity of different carbon sources and their related microorganisms. We also showed that iron oxides play a central role in regulating methane emissions from paddy soils and need more attention to be paid to them.

Ozone Consumption by Soils: A Critical Factor in In Situ Ozonation Processes

In situ chemical ozonation (ISCO3), in which gaseous ozone is being injected into the subsurface, is a common method for remediating contaminated groundwater that is largely affected by the inevitable consumption of ozone by soil itself (rather than the target contaminants). In this study, ozone consumption by two main soil types of Israeli coastline aquifer was examined. Iron-rich soil showed considerably higher reactivity than did calcareous soil. We further investigated the effect of both physical and chemical soil characteristics on finite and catalytic ozone decay, hydroxyl-radical formation, and ozone transport behavior. Ozone consumption increased by >90% in the presence of fine soil particles (<100 μm), resulting from the large number of reactive sites and the higher content of ozone consumers compared to coarse soil particles. Soil organic matter consumed ozone twice as fast as iron components, promoted radical formation at higher rates, and mainly acted as a finite ozone consumer. In continuously fed column experiments, the reactions with iron components dominate catalytic ozone consumption during transport in porous media. Overall, this study demonstrates that the characterization of ozone reactions in soil can be helpful in evaluating the feasibility and efficiency of ISCO3 and inform the design of ISCO3 treatment, e.g., the need to inject additional radical promoters.

Influence of Tall Fescue Epichloë Endophytes on Rhizosphere Soil Microbiome.

Tall fescue (Lolium arundinaceum (Schreb.) S.J. Darbyshire) often forms a symbiotic relationship with fungal endophytes (Epichloë coenophiala), which provides increased plant performance and greater tolerance to environmental stress compared to endophyte-free tall fescue. Whether this enhanced performance of tall fescue exclusively results from the grass–fungus symbiosis, or this symbiosis additionally results in the recruitment of soil microbes in the rhizosphere that in turn promote plant growth, remain a question. We investigated the soil bacterial and fungal community composition in iron-rich soil in the southeastern USA, and possible community shifts in soil microbial populations based on endophyte infection in tall fescue by analyzing the 16s rRNA gene and ITS specific region. Our data revealed that plant-available phosphorus (P) was significantly (p < 0.05) influenced by endophyte infection in tall fescue. While the prominent soil bacterial phyla were similar, a clear fungal community shift was observed between endophyte-infected (E+) and endophyte-free (E−) tall fescue soil at the phylum level. Moreover, compared to E− soil, E+ soil showed a greater fungal diversity at the genus level. Our results, thus, indicate a possible three-way interaction between tall fescue, fungal endophyte, and soil fungal communities resulting in improved tall fescue performance.