This study offers a comprehensive investigation into the fabrication of all-oxide-based magnetic tunnel junctions (MTJs) utilizing the focused ion beam (FIB) nanomachining method. The oxide thin films of SrTiO3 (STO), La[Formula: see text]CaxMnO3 (LCMO) and La[Formula: see text]SrxMnO3 (LSMO) were grown using pulsed laser deposition (PLD). Magnetization measurements at 5K revealed a notable difference in coercivity between LCMO and LSMO films, highlighting their suitability as electrodes in MTJ device fabrication. The deposited trilayer structure of LCMO/STO/LSMO exhibited heteroepitaxial growth, enabling the independent magnetic switching of electrode layers in the MTJ with the STO barrier layer. Conventional photolithography and ion milling were used to create a series of 4[Formula: see text][Formula: see text]m Hall bar tracks in the deposited films. Nanopillar devices, sized 250[Formula: see text]nm[Formula: see text]×[Formula: see text]250[Formula: see text]nm, were successfully fabricated on these 4[Formula: see text][Formula: see text]m tracks by optimizing the FIB nanomachining technique. The fabricated MTJs demonstrated a high tunnel magnetoresistance (TMR) response, leading to the conclusion that the FIB nanomachining technique holds significant promise for the development of high-performance oxide-based spintronic devices.