Intrapopulation Variation Research Articles

Genetic Variation in Trophic Avoidance Behaviour Shows Fruit Flies are Generally Attracted to Bacterial Substrates.

Pathogen avoidance behaviours are often assumed to be an adaptive host defence. However, there is limited experimental data on heritable, intrapopulation phenotypic variation for avoidance, a strong prerequisite for adaptive responses to selection. We investigated trophic pathogen avoidance in 122 inbred Drosophila melanogaster lines, and in a derived outbred population. Using the FlyPAD system, we tracked the feeding choice that flies made between substrates that were either clean or contained a bacterial pathogen. We uncovered significant, but weakly heritable variation in the preference index amongst fly lines. However, instead of avoidance, most lines demonstrated a preference for substrates containing several bacterial pathogens, showing avoidance only for extremely high bacterial concentrations. Bacterial preference was not associated with susceptibility to infection and was retained in flies with disrupted immune signalling. Phenotype-genotype association analysis indicated several novel genes (CG2321, CG2006, and ptp99A) associated with increased preference for the bacterial substrate, while the amino-acid transporter sobremesa was associated with greater aversion. Given the known fitness benefits of consuming high-protein diets, our results suggest that bacterial attraction may instead reflect a dietary preference for protein over carbohydrate. More work quantifying intrapopulation variation in avoidance behaviours is needed to fully assess its importance in host-pathogen evolutionary ecology.

Population genetic diversity of Culex tritaeniorhynchus in Jining City of Shandong Province based on the mitochondrial cytochrome C oxidase I gene

To understand the genetic basis of the adaptation of Culex tritaeniorhynchus to different environmental ecology in Jining City, Shandong Province, so as to provide insights into understanding of the population structure or isolation pattern of Cx. tritaeniorhynchus in the city. Seven sampling sites were selected from urban, suburban and rural areas of Jining City, Shandong Province from June to August 2023, and mosquitoes were collected using mosquito-trapping lamps. All collected adult mosquitoes were identified morphologically. Genomic DNA was extracted from a single female Cx. tritaeniorhynchus mosquito, and the mitochondrial cytochrome C oxidase I (COI) gene was amplified using a PCR assay, sequenced and subjected to molecular identification. The number of haplotypes, haplotype diversity (Hd), nucleotide diversity (Pi), and average number of nucleotide differences (K) of Cx. tritaeniorhynchus DNA sequences were estimated among different sampling sites using the software DnaSP 6, and a neutrality test was performed. The fixation index (FST), and gene flow (number of migrants, Nm) of Cx. tritaeniorhynchus populations were calculated using the software Arlequin 3.5.2, and subjected to analysis of molecular variance (AMOVA). In addition, a haplotype network diagrams and a phylogenetic tree of Cx. tritaeniorhynchus populations were created using the software PopART and MEGA 11, respectively. A total of 420 sequences were successfully amplified from the COI gene of Cx. tritaeniorhynchus samples collected from 7 sampling sites in Jining City, and a gene fragment sequence with a length of 603 bp was obtained, with 55 variable sites and 46 haplotypes and without insertion or deletion mutations. Of the 46 haplotypes, H01 was the dominant shared haplotype, and the haplotype frequency increased gradually from urban areas (34.00%) to rural areas (47.00%). The mean Hd, Pi and K values of Cx. tritaeniorhynchus COI genes were 0.814, 0.024 and 14.129, 0.489, 0.016 and 7.941 and 0.641, 0.016 and 10.393 in suburban, urban, and rural areas, respectively, with the highest population diversity of Cx. tritaeniorhynchus in suburban areas and the lowest in urban areas. Paired FST analysis among different types of sampling sites showed that the mean FST value was 0.029 between urban and suburban areas, indicating more frequent inter-population communication. AMOVA revealed that the percentage of intra-population variation (95.74%) was higher than that of inter-population variation (4.26%). Neutrality tests showed deviation from neutrality in Cx. tritaeniorhynchus populations collected from Nanyang Township (Tajima's D = 2.793, Fu's Fs = 6.429, both P values < 0.05). In addition, the mismatch distribution curves of Cx. tritaeniorhynchus COI gene appeared bimodal or multimodal patterns in Jining City, indicating a relatively stable overall population size. The mitochondrial COI gene may be used as a molecular marker to investigate the population genetic diversity of Cx. tritaeniorhynchus. The population genetic diversity of Cx. tritaeniorhynchus is higher in the suburban areas of Jining City than in rural and urban areas, and there are frequent genetic exchanges between Cx. tritaeniorhynchus populations from urban and suburban areas.

Alien Rainbow Trout Oncorhynchus mykiss in the Balkhash Basin (Kazakhstan, Central Asia): 50 Years of Naturalization.

Rainbow trout, or mykiss (Oncorhynchus mykiss), is one of the most popular species used in aquaculture and has been naturalized worldwide, including in the Central Asian Balkhash basin, which has unique aboriginal fish fauna. Both rainbow trout from European farms and wild mykiss from Kamchatka were introduced to some mountain lakes and rivers of the Balkhash basin about 50 years ago. This study investigates the current distribution and life history traits of the alien species and its possible impact on the local fish fauna. This study showed that the rainbow trout occupies various habitats in the Ili River basin: mountain lakes, fast-flowing mountain rivers, and lowland rivers with slow currents and warm water (up to +27 °C). Rainbow trout from European fish farms dominate the mountain Middle Kolsay Lake, while the wild trout from Kamchatka occupies the small Ulken Kokpak River. Both co-occur in the Chilik River. Contrary to that in other regions, the distribution of rainbow trout in the Balkhash basin remained almost the same after their introduction. Broad intrapopulation variability in terms of size, growth rate, and maturation age was revealed, apparently as a result of adaptation to the new environment and intrapopulation competition. In particular, the growth rate has decreased, but life span, surprisingly, has increased as compared to the originally introduced fish. Intrapopulation variation in growth and maturity patterns was also noted. Differences in skin coloration between highland (cold-water) and lowland (warm-water) populations were discovered. The feeding mode of naturalized trout is insectivorous (insect imago), indicating that it occupies its own niche in the local fish communities. The largest population of rainbow trout was recorded in the Lower Kolsay Lake, lowering the population of native fish species, while in other localities, no negative impact on local fish communities was recorded.

New taxonomical, distributional, and ecological data on the Helicodontidae (Gastropoda, Eupulmonata) of Crete (Greece)

Until now, the family Helicodontidae has been represented in Crete by two genera, Lindholmiola Hesse, 1931 and Helicodonta A. Férussac, 1821, with one species each, H. wilhelminae Maassen, 1991 and L. barbata (A. Férussac, 1821). We studied for the first time the reproductive system of H. wilhelminae and reclassify this species as Lindholmiola wilhelminae comb. nov. We present further details on its distribution and ecology and discuss the observed differences between recent and old shells. Based on the rich alcohol and shell materials in the Natural History Museum of Crete, we observed an impressive inter- and intra-population variability within L. barbata. The shells vary in form and size; small shells are associated with ecological factors and large shells with the northern part of Lefka Ori, the high mountains in western Crete. The reproductive system variation exceeds the limits of L. barbata species and confuses the species-specific characters of the genus, indicating the need for a new revision.

Genetic Variability of the Laxmann’s Shrew (&lt;i&gt;Sorex caecutiens&lt;/i&gt; Laxmann, 1788) of the Kolyma River Basin and Chukotka

Nucleotide sequence polymorphism and haplotypic diversity of the cytochrome b gene were studied in samples of the Laxmann’s Shrew Sorex caecutiens koreni from the populations of the Kolyma River basin and Chukotka. 56 cytb-haplotypes differing among themselves by 87 mutations in 84 sites were found. The cytb-haplotypes of individuals of the subspecies S. c. koreni and S. c. macropygmaeus were shown to belong to the same maternal mtDNA lineage, their monophyletic origin from the same ancestral haplotype Scb1, and the presence of identical cytb-haplotypes in both subspecies. The mutual isolation of the shrew populations in the upper basin of the Kolyma River and Chukotka is shown. The proportion of intrapopulation genetic variability is 95.74%, intergroup variability is 5.74%, and intragroup variability is –1.48%, which reflects a very high level of intrapopulation variability of cytb haplotypes in the studied groups of S. c. koreni, their monophyletic origin, and the genetic unity of the Chukchi samples. The values of molecular diversity indices testify to the stability of populations that have a high value of effective abundance for a long time.

Intrapopulation germinability may help the Mediterranean plant species Poterium spinosum L. to cope with climate changes and landscape fragmentation.

Poterium spinosum L. is a key plant species forming typical shrub communities, distributed across the Mediterranean eastern coasts. The conservation of P. spinosum is thus of the utmost importance, especially due to the ever-increasing environmental pressures like climate changes and habitat fragmentation. This study, in particular, investigated for the first time the germination variability of P. spinosum at intrapopulation level, by analysing the germination behavior of five different subpopulations growing along the coasts of Sicily. For a more exhaustive picture of the main drivers of biodiversity loss affecting the distributional area of P. spinosum, the trends of climate and land-cover changes were also studied over the periods 1931-2020 and 1958-2018, respectively. The results found significant intrapopulation variability in P. spinosum, whose germination parameters showed that fruits and seeds from distinct subpopulations respond differently to diverse temperatures. Seeds showed generally higher values of final germination percentage (FGP) compared to fruits, and at higher temperatures: the highest FGP in seeds was 70% at 20°C, whereas in fruits was 58.2% at 15°C. The environmental threats showed worrying trends across the study area: during 1931-2020, the average temperature increased by 1.5°C, whereas the average rainfall declined from 710 to 650mm. Similarly, in the period 1958-2018, the analysis of the CORINE land-cover changes showed a highly fragmented agricultural landscape, where natural areas were reduced to 2.5-5.0%. Germination variability at intrapopulation level should be considered as a fundamental adaptation strategy, which can increase the reproductive success of P. spinosum under climate and land-cover changes.

ВНУТРИПОПУЛЯЦИОННАЯ ИЗМЕНЧИВОСТЬ ЭКСТЕРЬЕРНЫХ И КРАНИАЛЬНЫХ ПАРАМЕТРОВ СОНИ ЛЕСНОЙ DRYOMYS NITEDULA PALLAS, 1778 (GLIRIDAE, RODENTIA) В УСЛОВИЯХ СЕВЕРНОГО МАКРОСКЛОНА ЦЕНТРАЛЬНОГО КАВКАЗА

Based on the cariologically dated serial material on forest dormouse from the Central North Caucasian population population, we first conducted a comprehensive analysis of 45 animals (23 male and 22 females). The contrariety of the opinions in the issues of systematics (the number of intraspecific forms) and the lack of sufficient material in the scientific literature on Dryomys Nitedula Pallas, 1778, taking into account the high-profile structure of the mountain landscapes, led to this study. The intrapopulation variability of the Kariotip, 28 morphometric parameters of the body and skull, as well as 5 indices (the ratio of the tail length to the length of the body, the ratio of the zuloma width to the condilobasal skull length, the ratio of the lower jaw to the condylobasal skull length, the ratio of the width of the skull in the area of the auditory drums to the condylobasal were studied. The length of the skull, the ratio of the height of the skull in the area of the auditory drums to the width of the skull in the area of the auditory drums) taking into account the floor. In addition an attempt was made to conduct a comparative analysis of the most resistant to transformation of the skull (only 9 measures) between the West North Caucasian and Central North Caucasian populations due to the fact that animals from the the West North Caucasian population turned out to be a new subspecies (D.N. Heptneri Subsp. NOV.) Based on the analysis of mitochondrial (according to the Cytb) DNA. It should be noted that for all the body and skull seals we have studied, as well as indexes, there is no sexual dimorphism (t &lt;3). In the conditions of the Elbrus version of the belt the Cariotic Sonya Lesnoy was studied for the first time (2n = 48, NF = 96). Allosome: X-chromosome is represented by an average submetententric, Y chromosome-the smallest element of the set. The karyotype turned out to be a persistent sign, is not subject to individual variability, respectively, has a high taxonomic weight.

Reproductive characteristics of indigenous village chickens

BackgroundIndigenous village chickens (IVCs) show a wide variation in production performance and reproductive characteristics. This high variation is occurred due to genetic and environmental factors and gene-environment interactions.ResultsThis work reports the results of a cross-sectional study conducted using a face-to-face interview with 119 small-scale farmers regarding their insights on the production performance and reproductive characteristics of IVCs. It was reported that pullets were sexually mature on average at the age of 5.5 months and cockerels at 6 months. This comparatively early sexual maturity by the standards of IVCs might be associated with the impact of uncontrolled gene flow from production breeds. However, there is high variation in age at sexual maturity at an individual bird’s level. It was found that pullets mature earlier than cockerels (t = 3.250, df = 159, p = 0.001, 95% CI: -0.670, -0.166). According to the respondents, local hens laid on average 14 eggs per clutch. The average number of clutches per year was 4, which can culminate in the yearly production of 56 eggs. A significantly large proportion of the respondents reported that the dry season is appropriate for laying eggs (96.7%) and brooding chicks (94.1%). During the dry season, the scavenging feed resource is relatively abundant, the risk of infection is comparatively low, and the hot weather is suitable for laying eggs and brooding chicks. IVCs possess a long reproductive lifetime, that is, on average, 3 years in hens and 2 years in cocks, which makes them more productive than has been anticipated. For example, this study found that a hen, on average, can lay 174 eggs and hatch 58 chicks in its average reproductive lifetime of 3 years.ConclusionsThe high intrapopulation variation in the reproductive performance of IVCs is vital resource in genetic improvement programs.

A Cluster of Diutina catenulata Funguria in Patients with Coronavirus Disease 2019 (COVID-19) Hospitalized in a Tertiary Reference Hospital from Rio de Janeiro, Brazil.

During the COVID-19 pandemic, fungal infections, especially pulmonary aspergillosis, mucormycosis, and invasive candidiasis, have emerged as a significant health concern. Beyond Candida albicans, the most common cause of invasive candidiasis, other rare ascomycetous yeast species have been described in tertiary care units, potentially posing a broader health threat. We have isolated, from September 2020 to June 2021, nine Diutina catenulata strains from urine samples of six patients. This was intriguing as this fungus had not been previously identified in our institution, nor after June 2021. Therefore, we decided to outline the clinical features of the patients with this rare pathogen, to describe phenotypic characteristics, including antifungal susceptibility profiles, of this yeast species and to identify the genetic makeup through whole-genome sequencing analysis to evaluate if this was a cluster of genetically similar D. catenulata isolates in our institution. The strains were identified through MALDI-TOF MS analyses and Sanger sequencing of two rDNA regions. All patients yielding D. catenulata from urine samples needed ventilator support and used urinary catheters during hospitalization for treatment of COVID-19. None of them had received COVID-19 vaccines. Morphological and biochemical profiles of the nine strains were largely consistent, although fluconazole susceptibility varied, ranging from 4 to 32μg/mL. Phylogenomic analysis revealed minimal genetic variation among the isolates, with low intrapopulation variation, supported by the identification of only 84 SNPs across all strains. Therefore, we propose that the yeast strains isolated were part of a cluster of D. catenulata funguria in the context of COVID-19.

Intrapopulation variability in coloration is associated with reproductive season in the crayfish Faxonius virilis

Abstract Animal coloration has a wide range of biological functions and may be subject to different, sometimes conflicting, selective pressures. In crustaceans, the evolution of coloration is relatively unstudied, despite the broad range of colors and color patterns, which includes variability at multiple levels. Freshwater crayfish are known to show color variability within species and populations, as well as intra-individual variability, but the function, if any, of crayfish coloration is largely unknown. Here, I report on an experiment to understand patterns of color variability in the crayfish Faxonius virilis and show that variation is strongly correlated to ontogenetic changes from a summer non-reproductive form to a fall reproductive form. Crayfish showed comparatively little inter- and intra-individual color variation in their non-reproductive form, but substantial variation at both levels in the reproductive form. Transition to the reproductive form was associated with the development of greener or bluer coloration localized to the chelae on a subset of individuals, but these changes showed no clear correlation with sex or body size. Future investigations should focus on determining whether differences in color between individuals in the mating season are associated with any physiological or behavioral differences, or with differential susceptibility to predation.

Unveiling intra-population functional variability patterns in a European beech (Fagus sylvatica L.) population from the southern range edge: drought resistance, post-drought recovery and phenotypic plasticity.

Understanding covariation patterns of drought resistance, post-drought recovery and phenotypic plasticity, and their variability at the intra-population level are crucial for predicting forest vulnerability to increasing aridity. This knowledge is particularly urgent at the trailing range edge since, in these areas, tree species are proximal to their ecological niche boundaries. While this proximity increases their susceptibility, these populations are recognized as valuable genetic reservoirs against environmental stressors. The conservation of this genetic variability is critical for the adaptive capacity of the species in the current context of climate change. Here we examined intra-population patterns of stem basal growth, gas exchange and other leaf functional traits in response to an experimental drought in seedlings of 16 open-pollinated families within a marginal population of European beech (Fagus sylvatica L.) from its southern range edge. We found a high degree of intra-population variation in leaf functional traits, photosynthetic performance, growth patterns and phenotypic plasticity in response to water availability. Low phenotypic plasticity was associated with higher resistance to drought. Both drought resistance and post-drought recovery of photosynthetic performance varied between maternal lines. However, drought resistance and post-drought recovery exhibited independent variation. We also found intra-population variation in stomatal sensitivity to soil drying, but it was not associated with either drought resistance or post-drought recovery. We conclude that an inverse relationship between phenotypic plasticity and drought resistance is not necessarily a sign of maladaptive plasticity, but rather it may reflect stability of functional performance and hence adaptation to withstand drought. The independent variation found between drought resistance and post-drought recovery should facilitate to some extent microevolution and adaption to increasing aridity. The observed variability in stomatal sensitivity to soil drying was consistent with previous findings at other scales (e.g., inter-specific variation, inter-population variation) that challenge the iso-anisohydric concept as a reliable surrogate of drought tolerance.

Intrapopulation variation in reproduction of Lessonia variegata J. Agardh

ABSTRACT Lessonia variegata is an Aotearoa-New Zealand (A-NZ)-endemic kelp with significant commercial potential. Overseas, Lessonia spp. are harvested for use as human and animal food, cosmetics, and bioactives for biomedical applications. In A-NZ, interest in developing cultivation methodologies and commercial applications for L. variegata is growing, especially because it is an exposed-shore species which makes it an ideal candidate for exposed-coast or open-ocean aquaculture. However, establishing cultivation of L. variegata in A-NZ is currently challenging because essential knowledge about its reproduction and sporophyte development is generally unknown. This preliminary study investigated the intrapopulation variation in the reproductive output of L. variegata individuals collected from one population on the north-east coast of the South Island, A-NZ by quantifying the number of spores released, the percentage and number of spores settling, their germination, sex ratio, sporophyte production and growth. There were significant differences among individuals in the number of spores released and germinated, as well as the production of sporophytes and their growth. However, the sex ratio and the percentages and numbers of spores settling were similar among individuals. Evident differences reported in spores released and development can have possible implications for aquaculture including biobanks or sporophytes production.

Tolypella mongolica (Charophyceae, Characeae): A new dioecious charophyte species from the center of Eurasia and implications for charophyte taxonomy, including the validation of T. porteri and the new combination for T. jwalae

A new dioecious species of Tolypella, T. mongolica sp. nov. from the section Tolypella, was described using an integrative taxonomy. It was found in three distant localities – shallows of a brackish small lake and a channel in the midland steppe in Mongolia and the Altai Mountains, and a small brackish water body in the dry steppe in Southeast Europe. It differs from other species in rbcL and ITS sequences and in distinct complex ornamentation of the oospore surface, varying from sparsely coarsely tuberculate to having the appearance of an aerial view of mountain landscape with acute to mostly sharp edges of elements at probably the ripest stage. Wide intrapopulation variability of expression of this trait, only partly explainable by oospore ripening stage, was found and illustrated for two populations, indicating previous underestimation of this phenomenon in taxonomic research. T. mongolica is richly fertile and appears to be ephemeral as most species of this genus. Only female plants were found in all localities. The absence of male plants could be referred to either their earlier development during the growing season or, less likely, parthenogenesis in this species. The description of the new species suggests taxonomic changes for two dioecious species of charophytes. Tolypella porteri stat. et comb. nov. was validated here. T. jwalae was recognized as a species of Nitella, N. jwalae comb. nov.

Phenotypic analysis of mezcal agaves from the Central Valleys of Oaxaca

Objective: Mezcal agaves in the state of Oaxaca have a high economic value due to the demand for mezcal production; therefore, the purpose of this work was to assess and highlight the importance of morphological diversity within and among cultivated Agave species. Design/Methodology/Approach: A completely randomized experimental design with 25 treatments (populations) and 11 replicates (individuals) was implemented. The plant (individual) was the experimental unit and 19 morphological descriptors proposed by the National Seed Inspection and Certification Service (SNICS) were assessed. A total of 275 individuals of the Agave angustifolia, Agave karwinskii, Agave marmorata, Agave rhodacantha, Agave potatorum, Agave seemanniana, and Agave nussaviorum species were assessed using a multivariate analysis to determine their phenotypic variability and existing relationships. Results: The dendrograms for the Q-mode and R-mode were obtained by means of a cluster analysis, forming 4 groups based on the average linkage generated from the standardized BDM of the sampled species of the genus Agave. Four groups were formed using the k-means clustering method, in accordance with field observations and a review of the taxonomic bibliography. The first two principal components (PC) accounted for 66.4% of the total variation, according to the principal component analysis (PCA). For PC1 and PC2, the variables with the highest contribution were those related to leaf shape (Fh), size of the lateral spine (FEL), number of leaves (Nh), plant height (H), uniformity in the size of the lateral spines (UTE), and terminal spine shape (FET). Study Limitations/Implications: A comprehensive study requires taxonomic keys to identify species, subspecies, and even varieties of Agave. Additionally, molecular characterization is essential to understand the variability and phylogenetic relationships of these populations, subject to a phylogenetic analysis. Findings/Conclusions: Multivariate analysis techniques revealed that three species showed high phenotypic variability in the maturation stage under cultivation conditions. The A. potatorum and A. karwinskii species had a greater intra-population phenotypic variability, with significant differences within the same species. Agave marmorata showed no intra- or inter-population variability. Leaf texture (Txh) was the only variable that explained the variation within its group. This is a tall species whose diameter is larger than in the other species. The variables of the Mexican (Agave rhodacantha) group showed low correlation, as their behavior was highly dispersed. The variables obtained in the field from this group of populations must be meticulously assessed to identify the degree of correlation between the variables and to confirm the behavior of this group.

Sex-specific diet differences in harbor seals (Phoca vitulina) via spatial assortment.

The lack of recovery of Chinook salmon (Oncorhynchus tshawytscha) in the Pacific Northwest has been blamed in part on predation by pinnipeds, particularly the harbor seal (Phoca vitulina). Previous work at a limited number of locations has shown that male seal diet contains more salmon than that of female seals and that sex ratios at haul-out sites differ spatiotemporally. This intrapopulation variation in predation may result in greater effects on salmon than suggested by models assuming equal spatial distribution and diet proportion. To address the generality of these patterns, we examined the sex ratios and diet of male and female harbor seals from 13 haul-out sites in the inland waters of Washington State and the province of British Columbia during 2012-2018. DNA metabarcoding was conducted to determine prey species proportions of individual scat samples. The sex of harbor seals was then determined from each scat matrix sample with the use of quantitative polymerase chain reaction (qPCR). We analyzed 2405 harbor seal scat samples using generalized linear mixed models (GLMMs) to examine the factors influencing harbor seal sex ratio at haul-out sites and permutational multivariate analysis of variance (PERMANOVA) to examine the influence of sex and haul-out site on harbor seal diet composition. We found that the overall sex ratio was 1:1.02 (female:male) with notable spatiotemporal variation. Salmoniformes were about 2.6 times more abundant in the diet of males than in the diet of females, and Chinook salmon comprised ca. three times more of the average male harbor seal's diet than the average female's diet. Based on site-specific sex ratios and diet data, we identified three haul-out sites where Chinook salmon appear to be under high predation pressure by male harbor seals: Cowichan Bay, Cutts Area, and Fraser River. Our study indicates that combining sex-specific pinniped diet data with the sex ratio of haul-out sites can help identify priority sites of conservation concern.

Uptake of dissolved inorganic nitrogen and N2 fixation by Crocosphaera watsonii under climate change scenarios

The response of N2 fixation to projected future conditions in the ocean cannot be reliably predicted to date. We conducted a minicosm experiment with pre-acclimated cultures of the globally significant diazotroph Crocosphaera watsonii strain WH8501 (“Crocosphaera”). PH and temperature were altered simultaneously to match the RCP scenarios 4.5 and 6 and investigate a more realistic future scenario compared to studies that focus on changes of a single stressor only. The cell abundance and nitrogen metabolism of Crocosphaera was monitored over 5 days. Our results imply that Crocosphaera is able to simultaneously perform N2 fixation and assimilate dissolved inorganic nitrogen (DIN, i.e., nitrate and ammonium) under all the conditions tested and implies a competition with non-diazotrophic phytoplankton for DIN, which should be further investigated. Using NanoSIMS analysis of single cells, our results point towards a preference for DIN assimilation over N2 fixation under more acidic and warmer conditions. Overall, our results show that while the combined alteration of pH and temperature had a negative effect on the diazotroph’s growth and N2 fixation, Crocosphaera is likely to cope well with conditions in the future ocean. The high intra-population variability in nitrogen assimilation pathways may give this species the flexibility to quickly react to environmental changes.

Shotgun metagenomic analysis of microbiota dynamics during long-term backslopping fermentation of traditional fermented milk in a controlled laboratory environment

Traditional fermented milks are produced through an inoculation process that involves the deliberate introduction of microorganisms that have been adapted and perpetuated across successive generations. However, the changes in the microbiota of traditional fermented milk during long-term inoculation fermentation in a laboratory environment remain unclear. In this study, we collected 5 samples of traditional fermented milk samples from 5 different counties in Tibet (3 kurut products) and Xinjiang (2 tarag products) of China, which served as starter cultures for a 9-mo continuous inoculation fermentation experiment. We analyzed the inter- and intra-population variations in the microbial communities of the collected samples, representing their macrodiversity and microdiversity, using shotgun metagenomic sequencing. Across all samples, we obtained a total of 186 high-quality metagenomic-assembled genomes, including 7 genera and 13 species with a relative abundance of more than 1%. The majority of these genomes were annotated as Lactobacillus helveticus (60.46%), Enterococcus durans (9.52%), and Limosilactobacillus fermentum (6.23%). We observed significant differences in species composition and abundance among the 5 initial inoculants. During the long-term inoculation fermentation, we found an overall increasing trend in species diversity, composition, and abundances of carbohydrate metabolism module-encoding genes in the fermented milk bacterial metagenome, while the fermented milk virome exhibited a relatively narrow range of variation. Lactobacillus helveticus, a dominant species in traditional fermented milk, displayed high stability during the long-term inoculation fermentation. Our study provides valuable insights for the industrial production of traditional fermented milk.

Systematics of the Sierra Nevada endemic earwig: Eulithinus analis (Forficulidae, Dermaptera)

Since the description of Eulithinus analis (Rambur, 1838) the taxonomic position of this Sierra Nevada endemic earwig has been controversial. It has been subdivided in different taxa, assigned to various genera or transferred to different subfamilies. With the aim of clarifying its systematics, we performed a mitochondrial phylogeographic analysis using specimens from different localities of Sierra Nevada representing the diverse phenotypes treated as differentiated taxa until now, and a phylogenetic analysis including representatives of apparently distant, but morphologically close, relatives. The phylogenetic and phylogeographic results obtained using mitochondrial (cytb, cox1) and nuclear (ITS2) markers and the study of morphological characters, indicate that the Sierra Nevada Mountain Range harbors a single species of the genus Eulithinus. Based on these molecular data, the morphological characters used to date in the internal taxonomy of this group of earwigs, especially size and shape of the cerci, lack diagnostic validity and show a large inter- and intra-populational variability. These results imply the synonymy of Eulithinus montanus (Steinmann, 1981) with Eulithinus analis (Rambur, 1838) syn. nov. and the reconsideration of Eulithinus analis outside the subfamily Allodahliinae. We established the synonymy between Eulithinus analis (Rambur, 1838) and Forficula brevis Rambur, 1838 syn. nov., a name that must be removed from the synonymy of Forficula decipiens Gené, 1832.

Intrapopulation variation in boldness differs while average boldness is similar across populations of a widespread turtle

Intrapopulation variation in boldness differs while average boldness is similar across populations of a widespread turtle

Exploring the genetic diversity pattern of PvEBP/DBP2: A promising candidate for an effective Plasmodium vivax vaccine

Malaria remains a public health challenge. Since many control strategies have proven ineffective in eradicating this disease, new strategies are required, among which the design of a multivalent vaccine stands out. However, the effectiveness of this strategy has been hindered, among other reasons, by the genetic diversity observed in parasite antigens. In Plasmodium vivax, the Erythrocyte Binding Protein (PvEBP, also known as DBP2) is an alternate ligand to Duffy Binding Protein (DBP); given its structural resemblance to DBP, EBP/DBP2 is proposed as a promising antigen for inclusion in vaccine design. However, the extent of genetic diversity within the locus encoding this protein has not been comprehensively assessed. Thus, this study aimed to characterize the genetic diversity of the locus encoding the P. vivax EBP/DBP2 protein and to determine the evolutionary mechanisms modulating this diversity. Several intrapopulation genetic variation parameters were estimated using 36 gene sequences of PvEBP/DBP2 from Colombian P. vivax clinical isolates and 186 sequences available in databases. The study then evaluated the worldwide genetic structure and the evolutionary forces that may influence the observed patterns of genetic variation. It was found that the PvEBP/DBP2 gene exhibits one of the lowest levels of genetic diversity compared to other vaccine-candidate antigens. Four major haplotypes were shared worldwide. Analysis of the protein's 3D structure and epitope prediction identified five regions with potential antigenic properties. The results suggest that the PvEBP/DBP2 protein possesses ideal characteristics to be considered when designing a multivalent effective antimalarial vaccine against P. vivax.