Before the rise of the Northern Andes in Cenozoic time, Triassic to Jurassic extensional basins in northwestern South America accommodated predominantly continental strata partly intercalated with volcanic rocks. Coeval plutonism is attributed to a magmatic arc related to the subduction of the Farallon plate beneath South America. The basins later became involved in the Andean orogeny and are now partially exposed in the Eastern Cordillera and Middle Magdalena Valley of Colombia. We have employed (U/Pb) geochronology on zircons from Triassic-Jurassic felsic to intermediate volcanic and volcaniclastic rocks. Most of the ten samples have a substantial proportion of detrital zircons, but only three had no Mesozoic grains. The Mesozoic ages obtained range from ca. 201 Ma to ca. 177 Ma and overlap with published crystallization ages (K/Ar; Ar/Ar; U/Pb) from plutonic bodies. Volcanics from the Jordán and Girón formations are latest Triassic to Early Jurassic and synchronous with major plutonic activity. These ages constrain the early evolution of the extensional basins that formed from about the Triassic-Jurassic transition in an intra-arc position and facilitated the preservation of sediment and arc-derived volcanics. Middle Jurassic ages from the Noreán Fm. are synchronous with sparse plutonism west of the Middle Magdalena Valley. At this time, the magmatic arc had migrated westward, while intrusive activity in the Eastern Cordillera ceased. A geochemical rift signature only appears in scarce Early Cretaceous mafic intrusions that resumed magmatic activity in the Eastern Cordillera. This magmatism, now in a back-arc position, coincides with maximum subsidence of the large Cretaceous basin that extended across the older intra-arc rift basins. Extension and lithospheric thinning ceased by the end of the Early Cretaceous.Graphical abstract