Interspecific Variation Research Articles

Regulatory options for cultivars and hybrids of invasive plant species – the South African experience

Abstract Invasive plant taxa are generally regulated at the species level, without considering infra- or inter-specific variation. However, cultivars or hybrids can be of a lower level of risk, e.g., due to sterility. We evaluate six general approaches to regulating cultivars and hybrids -1) “Globally guilty by association”; 2) “Nationally guilty by association”; 3) “Guilty until proven innocent”; 4) “Negotiated guilt”; 5) “Claimed to be innocent”; and 6) “Innocent until proven guilty”. We discuss these approaches in the context of South Africa (which has a typified “Negotiated guilt” approach). Following negotiations since 2001 between the South African horticultural industry/green industry and legislators, an unofficial consensus list of “presumed sterile” cultivars and hybrids was produced in 2014 containing 187 entities from 34 taxa. In 2020 this was reduced to 157 entities from 16 taxa. But the evidence supporting the original lists and the subsequent revisions were not published. To address this issue, we developed a generic pro-forma for reporting sterility based on observations and/or experiments on: flowering, fruiting, pollen, and seeds; the potential for vegetation propagation; and the potential for genetic changes (including hybridisation and reversion to fertility). We recommend that such information should be incorporated into risk analyses conducted specifically for infra- and inter- specific entities, and only if the risk of a harmful invasion is demonstrated to be acceptably low or can be easily mitigated should such entities be exempted from regulation. This will be time-consuming, but by setting out the evidence clearly, the approach is transparent and provides a clear route for stakeholders to seek exemptions for entities of importance. In summary, although we suspect the simplicity of the “Negotiated guilt” approach is desirable to many stakeholders; in general, and specifically for South Africa, we recommend a shift towards the “Guilty until proven innocent” approach.

DNA barcode reference library of the fish larvae and eggs of the South China Sea: taxonomic effectiveness and geographic structure

Fish early-stages constitute useful indicators of the states of marine ecosystems, as well as important fishery resources. Given the spectacular phenotypic changes during ontogeny, and the paucity of diagnostic morphological characters at the species level, the identification of fish early-stages is a challenging task. DNA barcoding, the use of the mitochondrial gene of the cytochrome c oxidase subunit I (COI) as an internal species tag, opened new perspectives for the identifications of both larval fish and fish eggs. However, the accuracy of the identifications assisted by DNA barcoding are dependent of the completeness of the DNA barcode reference libraries used to assigned unknown sequences to known species. Here, we built a DNA barcode reference library for 113 species of larval fish and 85 species of fish eggs involving the production of 741 newly generated DNA barcodes from South China Sea (63 localities). Together with 514 DNA barcodes mined from Genbank for 116 species from the South China Sea regions, a reference library including 1255 DNA barcodes for 308 species (248 locations) was assembled. The present study emphasizes the importance of integrating DNA barcoding to large scale inventories of early stages, as DNA-based species delimitation analyses delimited 305 molecular operational taxonomic units (MOTUs) and multiple cases of discordance with morphological identifications were detected. Cryptic diversity is detected with 14 species displaying two MOTUs and a total of 23 species were lumped into 11 MOTUs due to low interspecific divergence and/or mixed lineages.

Climatic and edaphic controls of root-tip production and mortality in five temperate tree species

Root tips are the main components of absorptive fine roots, but their seasonal dynamics and relationship to environmental factors remain unclear due to the difficulties in methodology. In this study, we explored the temporal patterns of root-tip production and mortality in monoculture plantations of five temperate tree species at a common site in northeastern China, and identified the general environmental controls on such processes. We made monthly in-situ assessments of root tip length (RTL) production and mortality in two hardwood and three coniferous species with a minirhizotron (MR) method during the growing seasons of 2008 and 2009. Air temperature, rainfall, soil temperature and water content at 10 cm depth were determined concurrently. RTL production in all species exhibited consistent peaks in summer (June–August) in two growing seasons. RTL mortality showed substantial interannual and interspecific variability, with peaks in autumn and winter in 2008, but various patterns in 2009. RTL production positively correlated with monthly soil and air temperature across all species, and with monthly rainfall in three coniferous species. However, there was no significant correlation between RTL production and soil water content. By contrast, RTL mortality was weakly related to environmental factors, showing positive correlations with soil temperature in Korean spruce, and with rainfall in Korean pine and Korean spruce. Our findings suggest that the seasonal patterns of RTL production are convergent across the five temperate tree species due to the overlapped distribution of heat and rainfall, which can conduce roots to maximizing the acquisition of nutrient resources in the soil.

Expanding the Triangle of U: Comparative analysis of the Hirschfeldia incana genome provides insights into chromosomal evolution, phylogenomics and high photosynthesis-related traits.

The Brassiceae tribe encompasses many economically important crops and exhibits high intraspecific and interspecific phenotypic variation. After a shared whole-genome triplication (WGT) event (Br-α, ~15.9 million years ago), differential lineage diversification and genomic changes contributed to an array of divergence in morphology, biochemistry, and physiology underlying photosynthesis-related traits. Here, the C3 species Hirschfeldia incana is studied as it displays high photosynthetic rates under high-light conditions. Our aim was to elucidate the evolution that gave rise to the genome of H. incana and its high-photosynthesis traits. We reconstructed a chromosome-level genome assembly for H. incana (Nijmegen, v2.0) using nanopore and chromosome conformation capture (Hi-C) technologies, with 409Mb in size and an N50 of 52Mb (a 10× improvement over the previously published scaffold-level v1.0 assembly). The updated assembly and annotation was subsequently employed to investigate the WGT history of H. incana in a comparative phylogenomic framework from the Brassiceae ancestral genomic blocks and related diploidized crops. Hirschfeldia incana (x=7) shares extensive genome collinearity with Raphanus sativus (x=9). These two species share some commonalities with Brassica rapa and B. oleracea (A genome, x=10 and C genome, x=9, respectively) and other similarities with B. nigra (B genome, x=8). Phylogenetic analysis revealed that H. incana and R. sativus form a monophyletic clade in between the Brassica A/C and B genomes. We postulate that H. incana and R. sativus genomes are results of hybridization or introgression of the Brassica A/C and B genome types. Our results might explain the discrepancy observed in published studies regarding phylogenetic placement of H. incana and R. sativus in relation to the "Triangle of U" species. Expression analysis of WGT retained gene copies revealed sub-genome expression divergence, likely due to neo- or sub-functionalization. Finally, we highlighted genes associated with physio-biochemical-anatomical adaptive changes observed in H. incana which likely facilitate its high-photosynthesis traits under high light. The improved H. incana genome assembly, annotation and results presented in this work will be a valuable resource for future research to unravel the genetic basis of its ability to maintain a high photosynthetic efficiency in high-light conditions and thereby improve photosynthesis for enhanced agricultural production.

Morpho-molecular characterization and phylogenetic relationships of Encotyllabe percussa n. sp. (Monogenea: Capsalidae) from the spangled emperor Lethrinus nebulosus (Teleostei, Lethrinidae).

Encotyllabe percussa n. sp. is proposed based on morphology and DNA sequences analysis of ribosomal (18S, 28S) and mitochondrial (COI) gene fragments. Encotyllabe percussa n. sp. was found infecting the spangled emperor Lethrinus nebulosus (n = 75) with higher prevalence from Dibba, Musandam (Gulf of Oman) than in Dhofar Salalah (Indian Ocean), Oman (p = 0.03). The general morphology of E. percussa n. sp. resembles E. caballeroi, E. chironemi and E. spari, which exhibit pre-equatorial testes. However, E. percussa n. sp. shows unique morphological characteristics distinguishing from congeneric species: the large hamuli bear notch allocated externally between the first half proximal of the root, and the small hamuli exhibit semicircular shape with undivided roots. Phylogenetic relationships within the Encotyllabe genus remain unresolved. However, the tree topology with the 28S showed overall consistency with the principal component analysis arrangement (PCA) derived from the morphological analysis. Which showed that the large and small hamuli, marginal hooks, ovary, testes (length and width) and peduncle are currently the most important morphological traits within the genus. Cytochrome c oxidase subunit I (COI) gene fragment showed high interspecific genetic divergence adding unambiguous resolution to discriminate/designate species identity. Interrelations within the genus support the identity of Encotyllabe percussa as a new species. This is the first species characterized with three gene fragments, the second congeneric species described in L. nebulosus and the first recorded in Oman.

Unraveling key environmental drivers of spatial variation in plant functional traits: Insights from Dacrydium pectinatum de Laub. in natural communities on Hainan Island, China

Accurate predictions of species distribution and coexistence in response to environmental changes depend on a thorough understanding of how functional traits relate to environmental conditions. However, there is still limited evidence regarding the sources of functional trait variation and the environmental mechanisms that regulate these traits in tropical forests. This study focuses on Dacrydium pectinatum de Laub., a crucial and endangered species native to the tropical mountain forests of Hainan Island, China. We gathered functional trait data from 68 permanent plots of D. pectinatum situated in three regions: Bawangling (163 tree species), Diaoluoshan (127 tree species), and Jianfengling (175 tree species). Nine functional traits were measured at the species level, and their variation patterns and sources were analyzed using linear mixed-effects models and variance decomposition methods. Our findings reveal that environmental pressures cause variations in trait relationships across different site conditions at the species level. Typically, inter-specific trait variation exceeds intra-specific variation, particularly for leaf area (LA) and specific leaf area (SLA). This indicates that trait variability is influenced by how species adapt to and balance specific environmental conditions. Site conditions significantly impact trait variation, especially for SLA, leaf dry matter content (LDMC), and wood density (WD). Additionally, intraspecific variation is notable for certain traits, reflecting individual responses to environmental heterogeneity. At the community level, eight out of nine traits exhibit significant changes in community-weighted mean (CWM) across various site conditions and environmental gradients. For instance, LA's CWM increases with soil fertility, whereas SLA, leaf nitrogen content (LNC), and leaf phosphorus content (LPC) show differences between site conditions. LDMC and WD decrease significantly in high-fertility environments, suggesting a transition from resource conservation to resource acquisition strategies within communities as soil fertility rises. Geographic variables play a crucial role in trait distributions across different community levels, with elevation and soil factors also contributing significantly to trait variation. Overall, our study provides direct evidence of how environmental filtering influences plant functional trait distributions and community assembly. Future research should explore the mechanisms driving these trait-environment relationships and their responses across various ecological contexts.

Geographic variability of carbon and nitrogen isotope ratios of nonvolant terrestrial small mammals (Rodentia) across 3 Brazilian biomes

Abstract In this study, we investigated landscape variability of the carbon and nitrogen isotopic composition of nonvolant small mammals in the 3 main Brazilian biomes (Amazon, Atlantic Forest, and Cerrado) while also considering the differential spatial distribution of C4 plants in these biomes. We compiled a subset of data on stable carbon and nitrogen isotope ratios from nonvolant small mammals of the order Rodentia and compared the aggregated isotopic variability at the biome level using classical δ13C–δ15N biplot. The concept of isotopic niche width was used to test whether different foraging attributes drive their isotopic composition, while a Bayesian isotopic mixing model was used to estimate the proportion of 3 main food categories available to these small mammals. We also developed isoscapes in the Brazilian biomes, interpolating animals δ13C and δ15N based on the geographic coordinates of each sample and “sourcescapes” considering geographic variation of the dietary sources. The findings of this study advance our understanding of the foraging ecology of small mammals in biodiversity-rich regions of the Neotropics. Classical methodologies such as stomach content confirmed dietary choices revealed by the stable isotopic composition and also highlighted the importance of C3 and C4 plants in the diet of this group of animals, especially in biomes such as the Atlantic Forest and Cerrado, where there is a predominance of highly altered landscapes. These results confirm that replacing the original vegetation with C4 crops has altered the feeding patterns of small mammals, which could lead to critical ecological changes in the trophic structure of these areas. Vertical stratification of the dietary niche and the interaction between biome and foraging lifestyle were also observed. However, in each biome, there was significant intraspecific and interspecific variation caused by preferences for ingestion of plant and animal material, leading to different degrees of omnivory. Finally, the high local variability between individuals and species requires a larger sampling design that may also contribute to improved spatial resolution of the isoscapes.

A new species of the pill millipede genus Rhopalomeris Verhoeff, 1906 (Diplopoda, Glomerida, Glomeridae) from Myanmar, and notes on Rhopalomeriscarnifex (Pocock, 1889).

The taxonomy of the pill millipede genus Rhopalomeris Verhoeff, 1906, which is restricted to Indochina and currently comprises six described species, is refined and updated. An integrative taxonomic approach was employed that combines morphological examination with DNA barcoding using the cytochrome c oxidase subunit I (COI) gene for species identification and delineation. The first objective was to confirm the identity of Rhopalomeriscarnifex (Pocock, 1889), a charismatic species known as the "candy pill millipede" due to its vivid coloration, based on specimens collected near the type locality in Myanmar. The second objective was to describe a new species, Rhopalomerisnigroflava Likhitrakarn, sp. nov., discovered in Linno Gu, Kayin State, Myanmar. This new species is distinguished by its small body size (5.1-9.7 mm long) and yellow body with contrasting brown to blackish markings on certain terga. In addition, the position of the telopod syncoxital lobe relative to the lateral syncoxite horns separates it from other Rhopalomeris species. The interspecific divergence between R.nigroflava Likhitrakarn, sp. nov. and other congeners ranges from 10.85% to 16.13%, based on uncorrected COI p-distances, while the intraspecific divergence was 0%-7.44%. A distribution map of and a revised identification key to all known species of Rhopalomeris are also provided.

Gyrodactylus serrai n. sp. (Gyrodactylidae), from the Near-Threatened Clanwilliam Sawfin, Cheilobarbus serra (Peters) (Cyprinidae, Smilogastrinae), in the Cape Fold Ecoregion, South Africa.

A new species of Gyrodactylus is described from the gills of the near-threatened Clanwilliam sawfin, Cheilobarbus serra (Smiliogastrinae) collected from the Matjies River, Cape Fold Ecoregion, Western Cape Province, South Africa. Morphometry and morphology of the haptoral hard parts (hamuli, bars and marginal hooks) of Gyrodactylus serrai n. sp. differ from the other known species of the genus in the smaller size of hamuli and the shape and size of marginal hooks. Furthermore, ITS rDNA for the new species is unique among available Gyrodactylus spp. data in GenBank. Based on the uncorrected p-distances, G. serrai n. sp. is genetically most closely related to Gyrodactylus moroccensis Rahmouni, 2023 and Gyrodactylus pseudomoroccensis Rahmouni, 2023 from two species of Luciobarbus (Barbinae) from northern Africa, with interspecific divergence of 8.7% and 8.8%, respectively. The presence of a median ridge in the terminal part of the ventral bar membrane at G. serrai n. sp. most probably represents a morphological link to the North African Gyrodactylus spp. that suggests a morphogenetic association across the African continent as a result of ancient waterways that facilitated the dispersion of cyprinids and their parasite fauna or an independent evolution event retaining similarities from a common ancestor. The description of Gyrodactylus serrai n. sp. represents only the second species of Gyrodactylus described from an endemic South African cyprinid host, underscoring the need for focused research on this group of fishes to provide a sound understanding of the parasitic communities of these highly threatened and poorly studied hosts.

Wood nutrients: Underexplored traits with functional and biogeochemical consequences.

Resource storage is a critical component of plant life history. While the storage of nonstructural carbohydrates in wood has been studied extensively, the multiple functions of mineral nutrient storage have received much less attention. Here, we highlight the size of wood nutrient pools, a primary determinant of whole-plant nutrient use efficiency, and a substantial fraction of ecosystem nutrient budgets, particularly tropical forests. Wood nutrient concentrations also show exceptional interspecific variation, even among co-occurring plant species, yet how they align with other plant functional traits and fit into existing trait economic spectra is unclear. We review the chemical forms and location of nutrient pools in bark and sapwood, and the evidence that nutrient remobilization from sapwood is associated with mast reproduction, seasonal leaf flush, and the capacity to resprout following damage. We also emphasize the role wood nutrients are likely to play in determining decomposition rates. Given the magnitude of wood nutrient stocks, and the importance of tissue stoichiometry to forest productivity, a key unresolved question is whether investment in wood nutrients is a relatively fixed trait, or conversely whether under global change plants will adjust nutrient allocation to wood depending on carbon gain and nutrient supply.

Anomalous latitudinal gradients in parasitoid wasp diversity-Hotspots in regions with larger temperature range.

Knowledge of global patterns of genetic diversity is essential for biodiversity conservation as this parameter describes the ability of a species to respond to environmental changes. Ichneumonoids parasitoid wasps are among the few taxa showing an anomalous latitudinal diversity gradient. Using the largest georeferenced molecular dataset for this group, we used a macrogenetics approach to examine latitudinal patterns and predictors of intraspecific genetic diversity. We calculated the mean nucleotide diversity of mitochondrial DNA barcode sequences at three geographic levels: grid cells, latitudinal bands and climatic zones. Nucleotide diversity values were consistently higher at northern temperate latitudes, peaking at 50°. We found a positive but weak relationship between intraspecific diversity and the latitude, between intra- and interspecific diversity, and a positive effect of the temperature range. Examining the spatial relationship between different levels of biodiversity and its drivers is particularly relevant considering climate change and its impact on species distribution. Yet, in insects, it has been challenging to integrate ecological, evolutionary and geographical components when analysing the processes leading to species richness gradients.

Variation in air sac morphology and postcranial skeletal pneumatization patterns in the African grey parrot.

The anatomy of the avian lower respiratory system includes a complex interaction between air-filled pulmonary tissues, pulmonary air sacs, and much of the postcranial skeleton. Hypotheses related to the function and phylogenetic provenance of these respiratory structures have been posed based on extensive interspecific descriptions for an array of taxa. By contrast, intraspecific descriptions of anatomical variation for these features are much more limited, particularly for skeletal pneumatization, and are essential to establish a baseline for evaluating interspecific variation. To address this issue, we collected micro-computed tomography (μCT) scans of live and deceased African grey parrots (Psittacus erithacus) to assess variation in the arrangement of the lungs, the air sacs, and their respective invasion of the postcranial skeleton via pneumatic foramina. Analysis reveals that the two pairs of caudalmost air sacs vary in size and arrangement, often exhibiting an asymmetric morphology. Further, locations of the pneumatic foramina are more variable for midline, non-costal skeletal elements when compared to other pneumatized bones. These findings indicate a need to better understand contributing factors to variation in avian postcranial respiratory anatomy that can inform future intraspecific and interspecific comparisons.

Assessing the thermal limits and metabolic profiles of small indigenous fish species: Informing conservation and aquaculture in a changing climate

This study explored the thermal tolerance and routine metabolic rate of ten small indigenous fish species from Northeast India: Amblypharyngodon mola, Esomus danrica, Puntius sophore, Gudusia chapra, Heteropneustes fossilis, Botia dario, Lepidocephalichthys guntea, Mystus cavasius, Aplocheilus panchax, and Glossogobius giuris. Fish were acclimated to 20°C, 25°C, and 30°C for two weeks prior to experiments and assessed for critical thermal maxima (CTmax), critical thermal minima (CTmin), lethal thermal maxima (LTmax), oxygen consumption rates, and respiratory quotients using standardized methods. The results revealed significant interspecific variations: CTmax ranged from 36.4°C to 41.7°C, CTmin from 8.7°C to 15.2°C, and LTmax from 41.5°C to 44.9°C. Oxygen consumption rates varied between 0.26 and 1.07 mg O₂/g/h, with respiratory quotients ranging from 0.76 to 1.01. Heteropneustes fossilis (CTmax: 41.7°C at 30°C acclimation) exhibited the highest thermal tolerance, while Amblypharyngodon mola had the lowest (CTmax: 38.2°C at 30°C acclimation). Differences in thermal tolerance between species were statistically significant (p<0.05). Notably, CTmax was positively correlated with oxygen consumption rates, suggesting a connection between metabolic rate and heat tolerance. These findings enhance our understanding of the physiological adaptations of these species to their thermal environments and underscore their conservation needs amidst climate change.

Classification, identification, and DNA barcoding study for common cockroach species (Dictyoptera: Blattaria) from China

Cockroaches are well-known pests and quarantined organisms worldwide. Due to morphological diversity and a lack of molecular data, their classification and identification are facing challenges. This study performed classification, identification, and DNA barcoding for cockroaches collected from China. Seventy-six samples were morphologically identified as seven species of two superfamilies that included Blattella germanica, Eublaberus posticus and Blaptica dubia belonging to the superfamily Blaberoidea, and Periplaneta americana, Periplaneta lateralis, Periplaneta fuliginosa and Periplaneta australasiae belonging to the superfamily Blattoidea. Based on sequence alignments of nine ribosomal and mitochondrial genes across the order Blattaria retrieved from GenBank, rDNA ITS2-517 bp and mtDNA 16S-327 bp were screened as candidates for molecular identification. Universal primers were designed for PCR amplification, cloning, and sequencing of the 37 representative samples. Sequence alignments and phylogeny analysis showed that both ITS2 and 16S confirmed samples 1–9, 20–24, and 25–29 as B. germanica, P. americana, and P. lateralis, respectively; only 16S (not ITS2) confirmed samples 10–14, 15–19, 30–34, and 35–37 as E. posticus, Blap. dubia, P. fuliginosa, and P. australasiae, respectively, indicating that 16S was a better target than ITS2 for molecular identification of cockroaches. Conservative motif and divergence analysis further revealed that ITS2 sequences vary significantly among different taxa, whereas 16S sequences are relatively conserved. There is an obvious barcoding gap between maximum intraspecific divergence and minimum interspecific divergence (2.57 % vs. 5.62 %) for ITS2, but not for 16S (6.15 % vs. 2.63 %). Therefore, it was confirmed that ITS2 is an ideal DNA barcode for molecular identification of cockroaches at lower category.

Diel movement patterns in nominally nocturnal coral reef fishes (Haemulidae and Lutjanidae): Intra vs. Interspecific variation

Diel movement patterns in nominally nocturnal coral reef fishes (Haemulidae and Lutjanidae): Intra vs. Interspecific variation

Forest fragmentation effects on plant-animal interaction do not always show consistent patterns – Evidence from a seed removal experiment of 31 woody species

Forest fragmentation often leads to changes in the abundance and composition of various organisms, thereby affecting biotic interactions. Currently, many studies lack consensus on the magnitude or direction of the impact of forest fragmentation on plant-animal interactions. Here, we employed seed-rodent interaction as a case study and assessed the removal by rodents of 66,960 seeds belonging to 31 woody species in 18 fragmented forests with areas of 1.05–14,517.63 ha, in a seriously fragmented tropical area in Southwest China for two consecutive years. Our study provided strong evidence that forest fragmentation affected seed-rodent interactions but did not follow a consistent pattern between years. Forest size and edge effects on seed removal were mainly due to variations in seed availability but not rodent activity. Interestingly, the effect of fragment size on seed removal was species-specific with monotonic decreases as well as U-shaped and humped-shaped patterns. These remarkable spatiotemporal and interspecific variations pertaining to forest fragmentation impact on seed removal may translate into subsequent seed germination and seedling regeneration processes, which may further influence the species composition in different fragmented forests. This complexity in responses among plant species reiterates the need to consider the interspecies specificity in conservation and management initiatives of fragmented forests. Additionally, we recommend that multiple field surveys involving multiple species be conducted in future studies focusing on forest fragmentation to help us better understand fragmentation effects on ecological processes.

Unique among high passes: Insights into the genetic uniqueness among butterflies of Ladakh Trans-Himalaya through DNA barcoding.

The butterfly assemblage of Ladakh Trans-Himalaya demands a thorough analysis of their population genetic structure owing to their typical biogeographic affinity and their adaptability to extreme cold-desert climates. No such effort has been taken till date, and in this backdrop, we created a COI barcode reference library of 60 specimens representing 23 species. Barcodes were generated from freshly collected leg samples using the Sanger sequencing method, followed by phylogenetic clade analyses and divergence calculation. Our data represents 22% of Ladakh's Rhopaloceran fauna with the novel barcode submission for six species, including one Schedule II species, Paralasa mani. Contrary to the 3% threshold rule, the interspecific divergence between two species pairs of typical mountain genus Hyponephele and Karanasa was found to be 2.3% and 2.2%, respectively. The addition of conspecific global barcodes revealed that most species showed little increase in divergence value, while a two-fold increase was noted in a few species. Bayesian clade clustering outcomes largely aligned with current morphological classifications, forming monophyletic clades of conspecific barcodes, with only minor exceptions observed for the taxonomically complicated genus Polyommatus and misidentified records of Aulocera in the database. We also observed variations within the same phylogenetic clades forming nested lineages, which may be attributed to the taxonomic intricacies present at the subspecies level globally, mostly among Eurasian species. Overall, our effort not only substantiated the effectiveness of DNA Barcoding for the identification and conservation of this climatically vulnerable assemblage but also highlighted the significance of deciphering the unique genetic composition among this geographically isolated population of Ladakh butterflies.

Phylogeography and population genetics of the endemic Italian water voles, Arvicola italicus

The genus Arvicola has a wide palearctic distribution and present two ecological forms – terrestrial and aquatic – characterizing the genus. In Europe two species are present: the most widespread, A. amphibius and A. italicus, endemic to Italy. The aim of the study was to describe the genetic structure and variability in A. italicus and the genetic identity of populations in northeast Italy, an area of biogeographic importance as contact zone for small mammal species.Thirty-six Italian water voles, displaced in population from south to north of Italy, were analyzed by two mitochondrial markers and 8 autosomal microsatellite loci. The phylogenetic analysis on the genus confirmed the presence of major groups mostly corresponding to the species and clades already described. About the Italian specimens, the individuals from one population in northeastern Italy resulted included in A. amphibius revealing the presence of this species in Italy and, in consequence, the possible presence of a putative contact zone between A. italicus and A. amphibius in the northeast. The phylogeny includes a second population from northeast Italy within A. amphibius, but in basal position and with a low support. The values of divergence of this lineage from A. italicus and A. amphibius lie on the threshold between intraspecific and interspecific divergence. Conversely, microsatellite data support a clear distinction between A. amphibius and A. italicus and includes the ambiguous mitochondrial lineage in this latter species. Furthermore, this northeastern population shows evidence of admixture of nuclear loci with the southcentral A. italicus populations, supporting the attribution of these specimens to A. italicus. This pattern could suggest that A. italicus in northeast Italy retained an ancestral haplotype and undergone a long period of isolation respect to the southern populations, without genetic exchange until recent times. Within A. italicus, the admixture shows northern population as the most differentiated showing limited evidence of admixture with the most diverse southcentral. The intraspecific diversity decreases from south to north as expected for an endemic small mammal in Italy. Finally, the low genetic diversity observed in the northern population can be challenging for a species as Arvicola living in fragmented habitats and susceptible to habitat loss; consequently, became important identifying suitable conservation measures for this barely known endemic small mammal.

DNA barcoding of southern African mammal species and construction of a reference library for forensic application.

Combating wildlife crimes in South Africa requires accurate identification of traded species and their products. Diagnostic morphological characteristics needed to identify species are often lost when specimens are processed and customs officials lack the expertise to identify species. As a potential solution, DNA barcoding can be used to identify morphologically indistinguishable specimens in forensic cases. However, barcoding is hindered by the reliance on comprehensive, validated DNA barcode reference databases, which are currently limited. To overcome this limitation, we constructed a barcode library of cytochrome c oxidase subunit 1 and cytochrome b sequences for threatened and protected mammals exploited in southern Africa. Additionally, we included closely related or morphologically similar species and assessed the database's ability to identify species accurately. Published southern African sequences were incorporated to estimate intraspecific and interspecific variation. Neighbor-joining trees successfully discriminated 94%-95% of the taxa. However, some widespread species exhibited high intraspecific distances (>2%), suggesting geographic sub-structuring or cryptic speciation. Lack of reliable published data prevented the unambiguous discrimination of certain species. This study highlights the efficacy of DNA barcoding in species identification, particularly for forensic applications. It also highlights the need for a taxonomic re-evaluation of certain widespread species and challenging genera.

Body size decline during thermal evolution is only detected at mild temperature.

Body size is a key morphological trait that affects physiology and metabolism, as well as other relevant traits such as fertility and mating success. Some evidence points to a trend of shrinking body size with increasing temperature, but this is far from unequivocal. Here, we assess the evolution of body size under a warming environment in experimentally evolved Drosophila subobscura populations from two distinct geographical origins, tested in both ancestral and warming environments. We observed a decrease in body size in the warming populations, but only in the lower-latitude populations and only when tested in the ancestral (control) environment. The absence of a body size response in the warming environment may be owing to a balance between forces promoting thermodynamic stability-leading to a tendency for body size to decrease-and selection for increased reproductive output-leading to an increase in body size. Our findings indicate that body size variation is complex, with genotype-by-environment interactions occurring. This may explain the lack of consistency across studies. This highlights that predictions of body size evolution under climate warming are not straightforward and emphasizes the need for considering intra- and inter-specific variation in future studies.