Internal Energy Distribution Of Ions Research Articles

Pentafluorobenzylpyridinium: new thermometer ion for characterizing the ions produced by collisional activation during tandem mass spectrometry.

In this study, pentafluorobenzylpyridinium (F5-BnPy+), which has the highest dissociation energy among the reported benzylpyridinium thermometer ion, is proposed to characterize the internal energy distributions of ions activated by higher energy collisional dissociation (HCD) and ion-trap collision-induced dissociation (CID) during tandem mass spectrometry. The dissociation threshold energies of F5-BnPy+ was determined using quantum chemistry calculations at the CCSD(T)/6-311++G(d,p)//M06-2X-D3/6-311++G(d,p) level of theory, and the appearance energies for ion dissociation in HCD and ion-trap CID were estimated using Rice-Ramsperger-Kassel-Marcus theory. The main differences between HCD and ion-trap CID are the collision energies used and the timescales of collisional activation. For both HCD and ion-trap CID, the average internal energy of the ions increased with increasing collision energy. In contrast, the average value for the internal energy of the ions activated by ion-trap CID was lower than that of ions activated by HCD, probably because of the smaller collisional energy and longer activation time of the ion-trap CID experiments. The reported method will aid in the determination of the optimum tandem mass spectrometry parameters for the analysis of small molecules such as metabolites.

Phenyl Sulfate Derivatives: New Thermometer Ions for Characterization of Internal Energy of Negative Ions Produced by Electrospray Ionization.

Although positive thermometer ions are widely used for evaluating the internal energy distribution of gas-phase ions, negative thermometer ions have not yet been proposed. In this study, phenyl sulfate derivatives were tested as thermometer ions to characterize the internal energy distribution of ions produced by electrospray ionization (ESI) in the negative mode because the activation of phenyl sulfate preferentially undergoes SO3 loss, providing a phenolate anion. The dissociation threshold energies for the phenyl sulfate derivatives were determined using quantum chemistry calculations at the CCSD(T)/6-311++G(2df,p)//M06-2X-D3/6-311++G(d,p) level of theory. The values for the appearance energies of the fragment ions of the phenyl sulfate derivatives depend on the dissociation time scale in the experiment; therefore, the dissociation rate constants of the corresponding ions were estimated using the Rice-Ramsperger-Kassel-Marcus theory. The phenyl sulfate derivatives were used as thermometer ions to determine the internal energy distribution of negative ions activated by the in-source collision-induced dissociation (CID) and higher-energy collisional dissociation. Both mean and full width at half-maximum values increased with increasing ion collision energy. In the in-source CID experiments, the internal energy distributions obtained by phenyl sulfate derivatives are similar to that when all voltages are mirrored, and the traditional benzylpyridinium thermometer ions are used. The reported method will aid in determining the optimum voltage for ESI mass spectrometry and the subsequent tandem mass spectrometry of acidic analyte molecules.

How Soft Is Secondary Electrospray Ionization?

Secondary electrospray ionization (SESI) mass spectrometry (MS) is a direct infusion technique often used for untargeted metabolomics, e.g., for online breath analysis. SESI is thought to be a soft ionization method, which is important to avoid interference from in-source fragments and to simplify compound annotation. In this work, benzylammonium ions, formed from volatile benzylamines, with known bond dissociation enthalpies were used as thermometer ions to investigate the internal energy distribution of ions that are produced by SESI. It is shown that SESI is softer than electrospray ionization (ESI), and therefore, SESI indeed qualifies as a soft ionization technique. However, we also found that the standard MS instrument settings used in the SESI community are relatively harsh. Proper soft tuning of the instrument is essential to fully benefit from the softness that SESI can provide. Moreover, there is evidence from in-source collision-induced dissociation (CID) experiments that analytes can be solvated in SESI under soft conditions, which supports a recently proposed SESI mechanism referred to as ligand switching.

Characterization of the Internal Energy of Ions Produced by Electrospray Ionization Using Substituted Benzyl Ammonium Thermometer Ions.

We propose the use of substituted benzyl ammonium species as thermometer ions to characterize the internal energy distribution of the ions produced by electrospray ionization (ESI). Crucially, we found that the activation of the benzyl ammonium species preferentially provided a benzyl cation via N-Cα bond cleavage. In addition, calculations at the CCSD(T)/cc-PVTZ//M06-2X-D3/6-311++G(d,p) level of theory revealed that the threshold energies of fragmentation of the tested model ions ranged from 86 to 192 kJ mol-1, significantly lower than those of conventional 4-substituted benzylpyridinium thermometer ions. Thus, the substituted benzyl ammoniums are suitable for the characterization of the ESI process under typical experimental conditions. Further, the internal energies of the ions were found to depend on the radiofrequency voltage of the ion funnel, which is used to increase the transport efficiency of the ions from atmospheric to vacuum conditions. Our reported method will aid the determination of the optimum ion-funnel radiofrequency voltage for the analysis of small molecules such as metabolites. Furthermore, benzyl ammoniums are commercially available, which will facilitate the routine and widespread measurement of the internal energy distributions of ions.

Experimental bond dissociation energies of benzylpyridinium thermometer ions determined by threshold-CID and RRKM modeling

Benzylpyridinium salts (BPs) have often been used as thermometer ions to obtain an energy calibration of mass spectrometric experiments (in particular to determine internal energy distributions of ions after the ionization process). Fragmentation of BP+ molecular ions is characterized by specific Bond Dissociation Energies (BDE) which depend on the substituent group and its location on the benzyl ring. Although those BDE values are regularly re-evaluated by quantum chemical calculations, their experimental determination is still missing from the literature. In this paper, a modified Quadrupole-hexapole-Quadrupole (QhQ) mass spectrometer is used to obtain such values on 4 BP+ molecular ions (characterized by a wide range of CN bond strengths) using Threshold Collision-Induced Dissociations (TCID) and Rice–Ramsperger–Kassel–Marcus (RRKM) kinetic modeling. It is found that experimental values are systematically 0.5eV lower than their most recent theoretical evaluations. Despite this shift, the absolute critical energy values are maintained in the same order (pOMe<pMe<pCl<pCN), and the relative energy differences are in very good agreement. We argue that the observed 0.5eV shift relates to the energy dependence of the Transition State’s number of states that is typical for barrier-less fragmentation processes and, relates to a kinetic rather than an energetic bottleneck. Notably, by taking into account the bond elongations characterizing the transition states and their corresponding calculated critical energies (E0), close agreement is found with experimentally obtained E0 values. We thus conclude that much care should be taken when describing the transition state during an internal energy calibration procedure where the involved energy is lower than 3–4eV.

Comparison of Internal Energy Distributions of Ions Created by Electrospray Ionization and Laser Ablation-Liquid Vortex Capture/Electrospray Ionization.

Recently a number of techniques have combined laser ablation with liquid capture for mass spectrometry spot sampling and imaging applications. The newly developed noncontact liquid-vortex capture probe has been used to efficiently collect material ablated by a 355 nm UV laser in a continuous flow solvent stream in which the captured material dissolves and then undergoes electrospray ionization. This sampling and ionization approach has produced what appears to be classic electrospray ionization spectra; however, the 'softness' of this sampling/ionization process versus simple electrospray ionization has not been definitely determined. In this work, a series of benzylpyridinium salts were employed as thermometer ions to compare internal energy distributions between electrospray ionization and the UV laser ablation/liquid-vortex capture probe electrospray combination. Measured internal energy distributions were identical between the two techniques, even with differences in laser fluence (0.7-3.1 J cm(-2)) and when using UV-absorbing or non-UV-absorbing sample substrates. These data, along with results from the analysis the biological molecules bradykinin and angiotensin III indicated that the ions or their fragments formed directly by UV laser ablation that survive the liquid capture/electrospray ionization process were likely to be an extremely small component of the total ion signal observed. Instead, the preponderate neutral molecules, clusters, and particulates ejected from the surface during laser ablation, subsequently captured and dissolved in the flowing solvent stream, then electrosprayed, were the principal source of the ion signal observed. Thus, the electrospray ionization process used controls the overall 'softness' of this technique.

Non‐thermal internal energy distribution of ions observed in an electrospray source interfaced with a sector mass spectrometer

The internal energy distribution P(E(int)) of ions emitted in an electrospray (ESI) source interfaced with a sector mass spectrometer is evaluated by using the experimental survival yield (SY) method including the kinetic shift. This method is based on the relationship between the degree of fragmentation of an ion and its amount of internal energy and uses benzylpyridinium cations due to their simple fragmentation scheme. Quantum chemical calculations are performed, namely at G3(MP2)//B3LYP and QCISD/MP2 levels of theory. The results show that the internal energy distribution of the ions emitted in the ESI source interfaced with a sector analyzer is very narrow. The MassKinetics software is used to confirm these observations. The P(E(int)) is the parameter that allows to fit the experimental SY of each substituted benzylpyridinium cation with theoretical mass spectra generated by the MassKinetics software. The resulting internal energy distributions are similar to the ones obtained with the experimental SY method. This indicates that in the present experimental conditions, P(E(int)) cannot be compared with a 'thermal-like' Boltzmann distribution. In addition, it appears that with the sector analyzer, increasing the collision energy in the first pumping stage of the ESI source does not correspond to a warm-up of the produced ions.

Ion internal energy distributions validate the charge residue model for small molecule ion formation by spray methods

This paper reports a detailed study of the internal energy distribution of ions formed by four electrospray ionization (ESI)-related ionization methods, with particular emphasis on electrosonic spray ionization (ESSI). Substituted benzylpyridinium ions were used as thermometer ions to probe the internal energy distribution. The influence of different instrumental parameters was studied. Cone and skimmer voltages as well as the collision energy were found to strongly affect the ion internal energy distribution, whereas the distance between the emitter and the inlet of the mass spectrometer, the nebulizing gas pressure or the flow rate showed no influence. The internal energy distribution obtained with an ESSI source was compared with those obtained for electrospray (ESI), nanoelectrospray (nanoESI) and sonic spray ionization (SSI) on the same mass spectrometer with the same instrumental parameters. No clear differences were observed. As the charge residue model is the only ion formation mechanism possible for SSI, we conclude that benzylpyridinium ions are formed by the pathway suggested by this model.

Comparison of the internal energy distributions of ions produced by different electrospray sources

The internal energies of the emitted ions can be modulated in an electrospray source through different experimental conditions. However, the fragmentation pattern depends also on conditions that cannot be controlled by the operator, e.g. the geometry of the source or the mode of transfer of the ions. These differences make difficult the comparison of the electrospray mass spectra obtained with different mass spectrometers. A method for the calibration of the internal energies of ions produced by an electrospray source has been presented previously to study the influence of experimental conditions on the internal energies of the ions. The method permits the calibration of individual working conditions. In this work, new results were obtained with modified values of fragmentation energy taking into account the kinetic shift of the thermometer ions. The internal energy distributions are compared for different instruments with different geometries, and are measured under different accelerating and focusing conditions. © 1998 John Wiley & Sons, Ltd.

Calibration of the internal energy distribution of ions produced by electrospray

Calibration of the internal energy distribution of ions produced by electrospray

Calibration of the internal energy distribution of ions produced by electrospray

The internal energy deposited in the ions in the source of a mass spectrometer governs their fragmentation and therefore the content of the spectra. When the ionization conditions are well defined and reproducible, e.g. in electron impact, the elaboration of databases benefits the use of the method. In electrospray, however, the source conditions are not strictly defined. The elaboration of spectra databases therefore requires a calibration of the internal energy of the ions that is valid for all types of spectrometers. A method for the calibration of the internal energy of ions in electrospray is presented, developed using the fragmentation reactions of a set of probe ions (benzylpyridinium salts) under various conditions (the voltage on the sampling cone, the nature of the collision gas, the composition of the mobile phase). The influence of the experimental conditions on the internal energy of the ions permits the calibration of individual working conditions. © 1998 John Wiley & Sons, Ltd.

Internal energy distributions acquired through collisional activation at low and high energies

It is possible to gain information about internal energy distributions of ions knowing their mass spectra and the energetics of fragmentation if one can equate pre-exponential terms in the unimolecular rate expressions. Positively charged triethyl phosphate, which fragments via a linear sequence of unimolecular reactions, has been examined in this way and the results have been checked by back-calculating the mass spectrum. It is found that low energy (28 eV in laboratory frame, argon target) collision-induced dissociation deposits a comparable average internal energy to what occurs at high energy (7 keV). High energy collisions, however, result in a distribution of internal energies which includes a low probability tail representing very highly excited ions. In the low energy regime, it is possible to increase dramatically the effective internal energy deposited by raising the collision gas pressure. The method of estimating internal energy distributions given here is particularly attractive for comparing ions excited by various means.

Time-resolved photoionization mass spectrometry. Unimolecular fragmentation of toluene ions near threshold.

A new technique, time resolved photoionization mass spectrometry, allows direct observation of the fragmentation of excited ions. The loss of a hydrogen atom from toluene ions is studied using photoionization wavelengths from 1053 to 1026 Å. Nonlinear least-squares fitting of the decay curves of the molecular ion show that only three discrete states are involved in the fragmentation. One state has a fragmentation rate which is fast (k≫2×104 s−1) on the time scale of the experiment while the other two have rates of 1.3±0.4 and 1.9±0.4 s−1. The present results are consistent with earlier electron impact studies. A careful analysis of previous metastable ion lifetime measurements shows that they do not constitute evidence for a continuous distribution of lifetimes as had earlier been claimed. Evidence presently available indicates that the internal energy distribution of ions formed by electron or photon impact is best described in terms of a relatively small number of discrete states rather than a continuous distribution.