Intermediate Electron Donor Research Articles

A visible-light-catalyzed sulfonylation reaction of an aryl selenonium salt via an electron donor-acceptor complex.

An efficient synthesis of sulfone structures through selenonium salts and sodium sulfinates was developed. Under the irradiation of a blue LED lamp, the two substrates generate aryl and sulfonyl radicals through the activation of the intermediate electron donor acceptor (EDA) complex, thereby synthesizing aromatic, heteroaromatic and aliphatic sulfones in medium to good yields. The advantages of this strategy are metal-free, mild conditions and the leaving group is recycled to construct new selenonium salts.

Interfacial electronic properties of hybrid interfaces

A detailed understanding of interfacial electronic properties of organic–inorganic hybrid junctions is crucial for their technological applications. In case of organic–inorganic hybrid junctions information about interfacial charge transfer, band bending and work function is crucial for efficient charge carrier movement across interfaces. In this context, investigation of filled and empty starts near Fermi level is relevant in molecular electronics to know electron affinity, and charge injection barriers. A multi-technique approach using ultraviolet photoemission and Inverse photoemission spectroscopy provides quantitative information about frontier occupied and unoccupied states near Fermi level, thereby providing crucial information about energy level alignment. Inverse photoemission spectroscopy technique is particularly helpful for the study of the electronic properties at metal–molecule interfaces and thus provides information about transport gap for conjugated organic molecules. Organic molecular beam epitaxy has been extensively utilized to deposit conjugated organic molecular thin films on various oxide, transition metal dichalcogenides and metallic substrates. Novel approaches have been investigated explored in order to control the interfacial energy level alignment by introducing intermediate electron donor and electron acceptor organic molecular layers across interfaces to tune the work function of electrodes. This review summarizes recent advances in exploiting combined approach using photoemission and inverse photoemission spectroscopy for the investigation of electronic properties of conjugated organic molecular interfaces.

A stable dye-sensitized photoelectrosynthesis cell mediated by a NiO overlayer for water oxidation

In the development of photoelectrochemical cells for water splitting or CO2 reduction, a major challenge is O2 evolution at photoelectrodes that, in behavior, mimic photosystem II. At an appropriate semiconductor electrode, a water oxidation catalyst must be integrated with a visible light absorber in a stable half-cell configuration. Here, we describe an electrode consisting of a light absorber, an intermediate electron donor layer, and a water oxidation catalyst for sustained light driven water oxidation catalysis. In assembling the electrode on nanoparticle SnO2/TiO2 electrodes, a Ru(II) polypyridyl complex was used as the light absorber, NiO was deposited as an overlayer, and a Ru(II) 2,2′-bipyridine-6,6′-dicarboxylate complex as the water oxidation catalyst. In the final electrode, addition of the NiO overlayer enhanced performance toward water oxidation with the final electrode operating with a 1.1 mA/cm2 photocurrent density for 2 h without decomposition under one sun illumination in a pH 4.65 solution. We attribute the enhanced performance to the role of NiO as an electron transfer mediator between the light absorber and the catalyst.

Expanding the Regulon of the Bradyrhizobium diazoefficiens NnrR Transcription Factor: New Insights Into the Denitrification Pathway.

Denitrification in the soybean endosymbiont Bradyrhizobium diazoefficiens is controlled by a complex regulatory network composed of two hierarchical cascades, FixLJ-FixK2-NnrR and RegSR-NifA. In the former cascade, the CRP/FNR-type transcription factors FixK2 and NnrR exert disparate control on expression of core denitrifying systems encoded by napEDABC, nirK, norCBQD, and nosRZDFYLX genes in response to microoxia and nitrogen oxides, respectively. To identify additional genes controlled by NnrR and involved in the denitrification process in B. diazoefficiens, we compared the transcriptional profile of an nnrR mutant with that of the wild type, both grown under anoxic denitrifying conditions. This approach revealed more than 170 genes were simultaneously induced in the wild type and under the positive control of NnrR. Among them, we found the cycA gene which codes for the c550 soluble cytochrome (CycA), previously identified as an intermediate electron donor between the bc1 complex and the denitrifying nitrite reductase NirK. Here, we demonstrated that CycA is also required for nitrous oxide reductase activity. However, mutation in cycA neither affected nosZ gene expression nor NosZ protein steady-state levels. Furthermore, cycA, nnrR and its proximal divergently oriented nnrS gene, are direct targets for FixK2 as determined by in vitro transcription activation assays. The dependence of cycA expression on FixK2 and NnrR in anoxic denitrifying conditions was validated at transcriptional level, determined by quantitative reverse transcription PCR, and at the level of protein by performing heme c-staining of soluble cytochromes. Thus, this study expands the regulon of NnrR and demonstrates the role of CycA in the activity of the nitrous oxide reductase, the key enzyme for nitrous oxide mitigation.

Biocompatibility of printed paper-based arrays for 2-D cell cultures

The use of paper-based test platforms in cell culture experiments is demonstrated. The arrays used for two-dimensional cell cultures were prepared by printing patterned structures on a paper substrate using a hydrophobic polydimethylsiloxane (PDMS) ink. The non-printed, PDMS-free areas formed the array for the cell growth experiments. Cell imaging was enabled by using a lipophilic staining agent. A set of coated paper substrates was prepared to study the effect of the physicochemical properties of the substrate (topography, roughness and surface energetics) on cell attachment and growth. The studied paper substrates were found to be cell-repellent or cell-supporting. Cell growth was supported by substrates with a large bearing area, low surface area ratio (Sdr), high total surface free energy and an intermediate electron donor surface energy component. The cells were grown to full confluency within 72h.

Conformational Dynamics of the FMN-Binding Reductase Domain of Monooxygenase P450BM-3

In the cytochrome P450BM-3, the flavin mononucleotide (FMN) binding domain is an intermediate electron donor between the flavin adenine dinucleotide (FAD) binding domain and the HEME domain. Experimental evidence has shown that different redox states of FMN cofactor were found to induce conformational changes in the FMN domain. Herein, molecular dynamics (MD) simulation is used to gain insight into the latter phenomenon at the atomistic level. We have studied the effect of FMN cofactor and its redox states (oxidized and reduced) on the structure and dynamics of the FMN domain. The results of our study show significant differences in the atomic fluctuation amplitude of the FMN domain in both holo- and apoprotein. The change in the protonation state of FMN cofactor mostly affects its binding in holo-protein. In particular, the loops involved in the binding of the isoalloxazine ring (Lβ4) and ribityl side chain (Lβ1) adopt different conformations in both reduced and oxidized states. In addition, the reduced FMN cofactor mainly induces a conformational change in Trp574 residue (Lβ4) that is essential for controlling electron transfer (ET) within P450BM-3 domains. The structure of the apoprotein in solution remains mostly unchanged with respect to the crystal structure of the holo-protein. However, FMN binding loops were more flexible in apoprotein that might favor the rebinding of FMN cofactor. In the holo-protein simulation, the largest conformational changes in FMN cofactor are caused by the ribityl side chain. The isoalloxazine ring of FMN cofactor remains almost planar (∼177°) in the oxidized state and bends along the N5-N10 axis at an angle of ∼160° in the reduced state. The collective modes of the isoalloxazine ring were identical in both protonation states of FMN cofactor except the first eigenvector. In the reduced state, the isoalloxazine ring attains the butterfly motion as a dominant collective motion in the first eigenvector due to the bending along the N5-N10 axis.

Production of a recombinant alkane hydroxylase (AlkB2) from Alcanivorax borkumensis

Alcanivorax borkumensis is an oil-degrading marine bacterium. Its genome contains genes coding for three cytochrome P450s and two integral membrane alkane hydroxylases (AlkB1 & AlkB2), all assumed to perform hydroxylation of different linear or branched alkanes. Although, the sequence of alkB2 has been determined, the molecular characterization and the substrate specificity of AlkB2 require more precise investigation. In this study, AlkB2 from A. borkumensis SK2 was expressed in Escherichia coli to examine the functionality of AlkB2 as a hydroxylating enzyme. Furthermore, the activity of the enzyme in the presence of the accessory proteins, rubredoxin (RubA) and rubredoxin reductase (RubB), produced in E. coli BL21(DE3)plysS cells, was determined. Recombinant AlkB2 is produced in an active form and rubredoxin is the intermediate electron donor to AlkB2 and can replace AlkG function, when NADH is the prime electron donor.

Oxidative Aromatic Substitutions: Hartree−Fock/Density Functional and ab Initio Molecular Orbital Studies of Benzene and Toluene Nitrosation

Aromatic nitrosations are prototypes of a recently proposed reaction mechanismoxidative aromatic substitutionsincorporating ground-state electron transfer prior to the substitution step. Ab initio MO and B3LYP hybrid Hartree−Fock/density-functional (HF/DF) calculations confirm that nitrosation proceeds through initial formation of intermediate electron donor−acceptor (EDA) π-complexes. Calculated π-complex geometries and energies agree qualitatively with experimental data and indicate the applicability of HF/DF methods for modeling EDA complexes. Subsequent transformation of (benzene−NO)+ and (toluene−NO)+ π-complexes into N-protonated nitroso-derivatives in B3LYP and MP2 calculations suggest an alternative to the currently proposed mechanism involving π-complex transformation into Wheland type σ-complexes (supported by CISD calculations). Kinetic analysis suggests the alternative mechanism is plausible and indicates that proton transfer from the N-protonated nitroso-derivatives to the medium would not be...

Primary Structure of Cytochrome b5 from Cauliflower (Brassica oleracea L.) Deduced from Peptide and cDNA Sequences

Cytochrome b(5) is a microsomal protein that functions as an intermediate electron donor in fatty acid desaturation and other oxidation/reduction reactions. cDNA clones were isolated from cauliflower (Brassica oleracea L.) by using oligonucleotides based on the partial amino acid sequence of the protein. The deduced amino acid sequence of the polypeptide exhibited approximately 30% sequence identity with the homologous protein from vertebrates.

Different functions assigned to NAD(H) and NADP(H) in light-dependent nitrogen fixation by heterocysts ofAnabaena variabilis

In the light, the NADH/NAD redox couple acts as a more potent intermediate electron donor than NADPH/NADP for nitrogenase activity in heterocyst homogenates of Anabaena variabilis. This is due to different properties of thylakoid-bound NADH dehydrogenase and ferredoxin: NADP oxidoreductase (EC 1.18.1.2), which oxidize NADH and NADPH, respectively. During nitrogenase activity in the light, a steady-state reduction charge difference of a factor of 10 can be calculated between both pyridine nucleotide couples, with NADPH/NADP being more reduced. From this it is inferred that on heterocyst thylakoids NADH dehydrogenase, photosystem I, ferredoxin and ferredoxin: NADP oxidoreductase constitute an efficient light-dependent transhydrogenase system.

Photooxidation of chlorophyll in spinach chloroplasts between 10 and 180 K

Electron paramagnetic resonance (EPR) and optical absorbance difference spectra and kinetics upon illumination by saturating flashes and continuous light of spinach chloroplasts frozen under various conditions were measured between 10 and 180 K. 1. 1. At 100 K illumination with continuous light caused an EPR signal which decayed during the light in about 30 ms. This change is probably due to the reduction of P +-680, the oxidized primary electron donor of Photosystem II, by a secondary electron donor, cytochrome b-559. Flash illumination yielded the previously observed rapid (2 ms) transient. This transient has been ascribed to a back-reaction of the two primary reagents of Photosystem II (Malkin, R. and Bearden, A. J. (1975) Biochim. Biophys. Acta 396, 250–259; Visser, J. W. M. (1975) Thesis, Leiden). 2. 2. Between 10 and 40 K, illumination with continuous light showed a transient which decayed in about 500 ms. The extent decreased with increasing temperature. However, the half time appeared to be temperature independent. This signal was also attributed to P +-680. 3. 3. At 180 K it appeared to be impossible to observe the 2 and 30 ms components in dark frozen chloroplasts. However, they could be observed again if two short saturating flashes were given shortly before freezing. These changes seem to be dependent on the S-state of the reaction center. 4. 4. After oxidizing the sample with ferricyanide ( E h = 540 mV), the light-induced absorbance difference spectrum showed a bleaching near 676 nm. This change is ascribed to the irreversible oxidation of a dimeric chlorophyll molecule which acts as electron donor to P +-680 under these conditions. 5. 5. Titration curves of the irreversible light-induced absorbance change at 676 nm and the irreversible light-induced EPR change near g = 2.00 provide strong evidence that these two changes reflect the same compound. Finally, a model is given to explain the observed reactions fo Photosystem II at 10–180 K. The model involves three differenct ultimate and one intermediate electron donor to P +-680 at these temperatures.

Nitrite reductase system involved in the terminal oxidation of the Streptomyces griseus respiratory particle

A nitrite reductase system which was associated with the electron transfer system of the respiratory particle in Streptomyces griseus was studied. The electron transfer pathway consisted of the cytochrome oxidase and the nitrite reductase systems under aerobic and anaerobic conditions respectively, and these systems showed the exact opposite response to 2- n-heptyl-4-hydroxyquinoline- N-oxide and azide. Azide inhibited specifically the nitrite reductase system. It seems that cytochrome d works as the nitrite reductase and the reduced cytochrome b works as an intermediate electron donor for cytochrome d respectively. The respiratory particle also had a hydroxylamine reductase activity and ammonia was identified as the product of hydroxylamine reduction by the respiratory particle. A terminal electron transfer pathway in Streptomyces griseus was proposed.