Fe-Mn oceanic crust on basalts of the guyot in the Mid-Pacific Seamount (Pacific Ocean, depth 2486 m, chemical composition (wt %): Mn 24.2, Fe 12.6, Ni 0.59, Co 0.72, Cu 0.13; (ppm) Pt 0.35, Pd 0.0052), was studied using 3D-technology of mineralogical research. In addition to dominaiting vernadite and goethite, the following minerals are identified in the hydroseparation (HS) concentrates of the crust: 1) rock forming and accessory minerals of basalts (clinopyroxene, plagioclase, potassium feldspar, biotite, ilmenite, titanomagnetite, Ti-chrome spinel, zircon, apatite); 2) sulfides that are identical to those from the basalt substrate (pyrite, chalcopyrite, bornite, chalcocite, tennantite, nickel pentlandite Ni4S3, sphalerite, galena, argentite/acantite, molybdenite); 3) native metals (iron, nickel, copper, titanium, tungsten); 4) iron silicides (gupeiite Fe3Si, xifengite Fe5Si3, and hapkeite Fe5Si3); 5) platinum group minerals - unnamed (Cu,Pt)4Si and rustenburgite (Pt,Pd)3(Sn,Sb). The complexes of ore minerals in basalts are identical to those of the Fe-Mn crusts. Basalt accessories are assumed to be primary phases and a source of metals for the formation of native minerals. “Microdroplets” of native iron Fe, (Fe,Ni), nickel Ni, (Ni,Cr), (Ni,Fe) and copper Cu (sizes 20–100 microns, degree of sphericity up to 100%) represent the products of their crystallization from metal melts in basalts, transported by deep fluid into Fe-Mn crusts on these rocks. The zoned microglobules of 20–70 microns sizes with iron or native nickel (core) + successive rims of wüstite-magnetite and Fe-Mn hydroxides were identified. They were apparently formed during the movement of these solid microparticles (from bottom to the top) along intergranular spaces and other permeability channels in basalts under conditions of increasing oxygen fugacity and falling temperature at various levels of deep fluid infiltration. The crystallization of native metals in the Fe-Mn crust that are characterized by low-temperature (10 °C) and oxidizing (fO2 MHG magnetite-hematite-goethite) conditions of mineral formation is impossible. The goethite replacement to different extent of many grains of relict Fe-minerals (sulfides and native metals) that are “foreign” to the Fe-Mn crust have been established. Fe-Mn crusts were formed as a result of the precipitation of colloidal particles Mn2+(Ba2+и Sr2+), to a lesser extent of the iron hydroxide Fe(ОН)3, as well as the concentration and transformation of micrograins of minerals of other metals, extracted by fluid from basaltic substrates. The comparison of the physico-chemical parameters of crystallization of basalts and native metals suggests another source of formation of native minerals in basalts, different from the postmagmatic basaltic fluid, i.e. deep-seated sharply reducing "hot" gas flows associated with superplumes. The mineralogical data determines a volcanogenic-fluid-oceanic model for the formation of Fe-Mn crusts on underwater oceanic elevations.