AbstractMagnetospheric whistler waves, chorus and hiss, can't provide the resonance heating of the core electron plasma population. However, these whistler‐mode branches, can implicitly participate in the heating processes of the core plasma thermal electron population by triggering the electron precipitation over a broad energy range from the magnetosphere and subsequent atmospheric ionization processes leading to the production of superthermal electron population. These superthermal electrons play a large role in the magnetosphere‐ionosphere‐atmosphere energy interplay with participation of both magnetically conjugate hemispheres, and their Coulomb interaction with background magnetospheric thermal electrons. Using strong hiss and chorus wave events measured by the Van Allen Probes and SuperThermal Electron Transport code, we evaluate the formation of electron heat fluxes at the upper ionospheric altitudes and discuss their consequences on the formation of electron temperature. It is found that chorus and hiss waves that initiate the precipitation of magnetospheric electrons with energies below 30 keV and the follow‐up production of secondary electrons play an important role in the energy balance of ionosphere‐magnetosphere system.