Intense Selection Research Articles

Neural network architecture search enabled wide-deep learning (NAS-WD) for spatially heterogenous property awared chicken woody breast classification and hardness regression

Due to intensive genetic selection for rapid growth rates and high broiler yields in recent years, the global poultry industry has faced a challenging problem in the form of woody breast (WB) conditions. This condition has caused significant economic losses as high as $200 million annually, and the root cause of WB has yet to be identified. Human palpation is the most common method of distinguishing a WB from others. However, this method is time-consuming and subjective. Hyperspectral imaging (HSI) combined with machine learning algorithms can evaluate the WB conditions of fillets in a non-invasive, objective, and high-throughput manner. In this study, 250 raw chicken breast fillet samples (normal, mild, severe) were taken, and spatially heterogeneous hardness distribution was first considered when designing HSI processing models. The study not only classified the WB levels from HSI but also built a regression model to correlate the spectral information with sample hardness data. To achieve a satisfactory classification and regression model, a neural network architecture search (NAS) enabled a wide-deep neural network model named NAS-WD, which was developed. In NAS-WD, NAS was first used to automatically optimize the network architecture and hyperparameters. The classification results show that NAS-WD can classify the three WB levels with an overall accuracy of 95 %, outperforming the traditional machine learning model, and the regression correlation between the spectral data and hardness was 0.75, which performs significantly better than traditional regression models.

Research note: Increased lipid accumulation within broiler preadipocytes during differentiation in vitro at atmospheric oxygen tension

In the broiler industry, intensive genetic selection has been placed on muscle growth which has undesirably led to increased fat accretion. Models of chicken preadipocyte differentiation in vitro have conventionally used incubators without the ability to control oxygen (O2) tension; thus, the cells are exposed to atmospheric (∼20-21%) O2, which is supraphysiological compared to the O2 tension within adipose tissue. The objective of this study was to investigate embryonic broiler preadipocyte differentiation at different O2 tensions, including atmospheric (20%), physiological (5%), and hypoxic (1%). Culture at 1% O2 resulted in increased abundance of HIF1α, a canonical protein stabilized during hypoxia, thus confirming effectiveness of the treatment. Increased accumulation of lipid was observed in preadipocytes cultured in adipogenic differentiation medium compared to the control medium. When considering oxygen tension, lipid accumulation was increased in preadipocytes that were cultured in differentiation medium at 20% O2 compared to 5% or 1% O2. Furthermore, abundance of transcripts related to fatty acid transport and adipogenesis, fatty acid binding protein 4 (FABP4) and peroxisome proliferator-activated receptor gamma (PPARγ), were increased in differentiated preadipocytes cultured at 20% O2 compared to 5% or 1% O2. Abundance of transcripts related to lipid synthesis and oxidation, acyl-CoA synthetase long chain family member 1 (ACSL1) and carnitine palmitoyltransferase 1A (CPT1A), were increased in the differentiation cultures compared to the control cultures. Abundance of glutathione peroxidase 4 (GPX4) was increased in all the differentiation cultures compared to the controls, regardless of oxygen tension; however, differences in the abundance of other antioxidant enzymes were not observed. Overall, exposure to atmospheric oxygen tension promotes lipid accumulation within chicken preadipocytes, which may need to be considered when developing in vitro models of this process.

The British Parliamentary Debate Practices in Promoting English Speaking Proficiency: A Systematic Literature Review in Multiple EFL Cases

This systematic review of the literature explored the impact of The British Parliamentary Debate Practice from several studies. The present study focused on the way debate practice enhances students’ English-speaking abilities in an EFL context. The PRISMA method stages to search journal databases was used in this study. However, after an intensive selection process, the researcher found that 11 articles from 3 reputable databases such as Google Scholar, Scopus, and Semantic Scholar had the most relevant and suitable content to answer the purpose of this Systematic Review study. The research findings revealed that the implementation of British Parliamentary Debate in English language teaching is highly effective to improve speaking skill. Besides, through this learning method, several aspects such as; linguistic skill, vocabulary, self-confidence, and self-awareness of students at various levels of education can also be increased. The researcher also found that there are learning stages using British Parliamentary Debate that can be adapted by teachers to improve the teaching of students’ speaking skills such as AREL (Argument, Reasoning, Evidence, Link Back) technique. In addition, the current study includes a number of recommendations.

Estimates of genetic parameters and genetic trends for growth traits in Menz sheep under community-based breeding programs

The main objectives of this study were to estimate genetic and phenotypic parameters for growth traits in Menz sheep under community-based breeding programs (CBBPs). Data used in the study were collected from five Menz CBBPs villages during 15-year period (2009–2023). Studied growth traits were birth weight (BW), weaning weight (WW), six-month weight (6 MW), yearling weight (YW), Average daily gain from birth to weaning (ADG1), average daily gain from weaning to six months (ADG2) and average daily gain from six months to yearling (ADG3). Fixed effects were estimated using the GLM procedure of SAS 9.4. Genetic parameters were estimated fitting different univariate animal models using Average Information Restricted Maximum Likelihood (AI-REML) procedure with WOMBAT software. The most appropriate model for each trait was determined applying likelihood ratio tests. Model including only direct additive genetic effect was the most appropriate model for BW, YW, ADG2 and ADG3, whereas model including direct additive and maternal additive genetic effect without taking into account covariance between them was the most appropriate for WW, 6 MW and ADG1. Based on the most appropriate models, direct heritability of BW, WW, 6 MW, YW, ADG1, ADG2 and ADG3 were 0.29 ± 0.01, 0.45 ± 0.01, 0.46 ± 0.02, 0.42 ± 0.02, 0.44 ± 0.01, 0.75 ± 0.02 and 0.21 ± 0.02, respectively. The estimated maternal heritability were 0.04 ± 0.01, 0.02 ± 0.01 and 0.02 ± 0.01 for WW, 6 MW and ADG1, respectively. Additive coefficient of variance were ranged from 9.53 % for BW to 33.02 % for ADG2. Moderate to higher estimates of direct heritability and additive coefficient of variation (CVA) in the current study indicates higher potential for genetic improvement of studied traits through direct selection. The genetic trend for the Menz sheep's six-month weight in Molale CBBPs village reveals a promising annual growth rate of 0.20 kg. Optimizing the ongoing breeding program into specializing-sire producer groups and applying intensive selection on the sub-nucleus flock could improve the efficiency of the breeding program. Genetic correlations among the studied traits were ranged from −0.50 for ADG-ADG2 to 0.98 for WW-ADG1. Genetic correlation between 6 MW and other studied traits was positive and moderate in magnitude. To achieve optimum genetic gain, the implemented selection criteria for Menz sheep (6 MW) should be continued.

The goat pan-genome reveals patterns of gene loss during domestication

BackgroundUnveiling genetic diversity features and understanding the genetic mechanisms of diverse goat phenotypes are pivotal in facilitating the preservation and utilization of these genetic resources. However, the total genetic diversity within a species can’t be captured by the reference genome of a single individual. The pan-genome is a collection of all the DNA sequences that occur in a species, and it is expected to capture the total genomic diversity of the specific species.ResultsWe constructed a goat pan-genome using map-to-pan assemble based on 813 individuals, including 723 domestic goats and 90 samples from their wild relatives, which presented a broad regional and global representation. In total, 146 Mb sequences and 974 genes were identified as absent from the reference genome (ARS1.2; GCF_001704415.2). We identified 3,190 novel single nucleotide polymorphisms (SNPs) using the pan-genome analysis. These novel SNPs could properly reveal the population structure of domestic goats and their wild relatives. Presence/absence variation (PAV) analysis revealed gene loss and intense negative selection during domestication and improvement.ConclusionsOur research highlights the importance of the goat pan-genome in capturing the missing genetic variations. It reveals the changes in genomic architecture during goat domestication and improvement, such as gene loss. This improves our understanding of the evolutionary and breeding history of goats.

Идентификация гаплоблоков, потенциально ассоциированных с эмбриональной смертностью крупного рогатого скота черно-пестрого корня

Abstract. In modern realities, the problem of cattle reproduction is becoming one of the most important issues in managing a large herd. The long-term desire of breeders in all countries of the world to increase milk productivity in dairy cattle has led to the degradation of their reproductive capacity. The service period has increased by more than 40 days, the insemination index has increased almost 2 times, the intercalving period has become 3 months longer than a year. Due to intensive selection aimed at milk production and a decrease in reproductive capacity, a cow does not give birth to a calf every year, and the percentage of pregnant animals after the first insemination has sharply decreased to 30%. In terms of the degree of loss of reproductive function in cows, embryonic mortality ranks first, due to which up to 70% of pregnancy losses occur in the first 45 days after fruitful insemination. Accelerating the pace of breeding progress requires the use of genomic selection in animal husbandry, which will make it possible to conduct genome-wide association studies (GWAS) with indicators of productive longevity and fertility of cows and to identify genomic regions subject to the greatest selection pressure for indicators of productive longevity and reproductive function of dairy cattle. Purpose of the work: Identification of haplotypes responsible for reproductive function of cattle. Research methods. The studies were conducted on the Holstein breed of cattle. Identification of homozygous haplotypes was carried out using the GHap package in R software. The scientific novelty of the work lies in the identification of homozygous haplotypes responsible for early embryonic mortality and affecting fertility in a population of Holstein cows of the Ural type, Results. During the processing of the data obtained, chromosomes with haploblocks were identified, which may be responsible for early embryonic mortality and affecting the fertility of cattle.

The genetic architecture of the load linked to dominant and recessive self-incompatibility alleles in Arabidopsis halleri and Arabidopsis lyrata

The long-term balancing selection acting on mating types or sex-determining genes is expected to lead to the accumulation of deleterious mutations in the tightly linked chromosomal segments that are locally ‘sheltered’ from purifying selection. However, the factors determining the extent of this accumulation are poorly understood. Here, we took advantage of variations in the intensity of balancing selection along a dominance hierarchy formed by alleles at the sporophytic self-incompatibility system of the Brassicaceae to compare the pace at which linked deleterious mutations accumulate among them. We first experimentally measured the phenotypic manifestation of the linked load at three different levels of the dominance hierarchy. We then sequenced and phased polymorphisms in the chromosomal regions linked to 126 distinct copies of S-alleles in two populations of Arabidopsis halleri and three populations of Arabidopsis lyrata. We find that linkage to the S-locus locally distorts phylogenies over about 10–30 kb along the chromosome. The more intense balancing selection on dominant S-alleles results in greater fixation of linked deleterious mutations, while recessive S-alleles accumulate more linked deleterious mutations that are segregating. Hence, the structure rather than the overall magnitude of the linked genetic load differs between dominant and recessive S-alleles. Our results have consequences for the long-term evolution of new S-alleles, the evolution of dominance modifiers between them, and raise the question of why the non-recombining regions of some sex and mating type chromosomes expand over evolutionary times while others, such as the S-locus of the Brassicaceae, remain restricted to small chromosomal regions.

The genetic architecture of the load linked to dominant and recessive self-incompatibility alleles in Arabidopsis halleri and Arabidopsis lyrata.

The long-term balancing selection acting on mating types or sex-determining genes is expected to lead to the accumulation of deleterious mutations in the tightly linked chromosomal segments that are locally 'sheltered' from purifying selection. However, the factors determining the extent of this accumulation are poorly understood. Here, we took advantage of variations in the intensity of balancing selection along a dominance hierarchy formed by alleles at the sporophytic self-incompatibility system of the Brassicaceae to compare the pace at which linked deleterious mutations accumulate among them. We first experimentally measured the phenotypic manifestation of the linked load at three different levels of the dominance hierarchy. We then sequenced and phased polymorphisms in the chromosomal regions linked to 126 distinct copies of S-alleles in two populations of Arabidopsis halleri and three populations of Arabidopsis lyrata. We find that linkage to the S-locus locally distorts phylogenies over about 10-30 kb along the chromosome. The more intense balancing selection on dominant S-alleles results in greater fixation of linked deleterious mutations, while recessive S-alleles accumulate more linked deleterious mutations that are segregating. Hence, the structure rather than the overall magnitude of the linked genetic load differs between dominant and recessive S-alleles. Our results have consequences for the long-term evolution of new S-alleles, the evolution of dominance modifiers between them, and raise the question of why the non-recombining regions of some sex and mating type chromosomes expand over evolutionary times while others, such as the S-locus of the Brassicaceae, remain restricted to small chromosomal regions.

Pre-Copulatory Sexual Selection Predicts Sexual Size Dimorphism: A Meta-Analysis of Comparative Studies.

Size differences between males and females are common across the tree of life (termed sexual size dimorphism; SSD), and have fundamental implications for ecology, life history and behaviour of both sexes. Conventionally, SSD is thought to evolve in response to sex-specific sexual selection but more recent work suggests that ecological processes can also promote sex-differences in size. Here, we provide a global test for the role of sexual selection in the evolution of sexual size dimorphism using data from 77 comparative studies spanning the major classes of the animal kingdom. We show that intense sexual selection typically correlates with male-biased SSD across species. Importantly, pre-copulatory but not post-copulatory sexual selection predicts SSD, suggesting a pervasive role of premating male-male competition and female choice to drive sex differences in body size. Collectively, our findings suggest that pre-copulatory sexual selection plays a major role in the evolution of male-biased SSD.

Low-Intensity Heparin Infusion Compared With High-Intensity Heparin Infusion Dosing in Patients With Mechanical Mitral Valves: A Retrospective Cohort Study.

Patients with a mechanical mitral valve have an increased risk of thrombosis, and guidelines recommend a higher international normalized ratio goal for vitamin K antagonists-based anticoagulation. Guidelines provide recommendations for bridging with unfractionated heparin; however, there is no clear guidance on the heparin infusion intensity that should be used. This study was a retrospective, single-center, cohort study of patients aged ≥18 years or older with a mechanical mitral valve admitted from June 2019 to September 2022 who were maintained on a singular heparin infusion intensity nomogram for at least 48 hours. The patients were stratified into either a low- or a high-intensity heparin infusion nomogram. The exclusion criteria included non-nomogram heparin infusions and patients within 30 days of valve implantation. The primary outcome of this study was a composite of all bleeding events (major, clinically significant nonmajor, and minor bleeding). The secondary outcomes included bleeding events, analyzed individually, and thrombotic events. Seven total bleeding events were observed between the 2 groups, with 1 minor bleeding event in the low-intensity group and 6 bleeding events in the high-intensity group. One thrombotic event occurred in the high-intensity group. No statistically significant differences were found between the primary and secondary outcomes. Future studies are necessary to guide heparin infusion intensity selection in patients with mechanical mitral valves.

The highly dynamic satellitomes of cultivated wheat species.

Durum wheat, Triticum turgidum, and bread wheat, Triticum aestivum, are two allopolyploid species of very recent origin that have been subjected to intense selection programs during the thousands of years they have been cultivated. In this paper, we study the durum wheat satellitome and establish a comparative analysis with the previously published bread wheat satellitome. We revealed the durum wheat satellitome using the satMiner protocol which is based on consecutive rounds of clustering of Illumina reads by RepeatExplorer2, and estimated abundance and variation for each identified satDNA with RepeatMasker v4.0.5. We have also performed a deep satDNA families characterization including chromosomal location by Fluorescence In Situ Hybridization (FISH) in durum wheat and its comparison with FISH patterns in bread wheat. Basic Local Alignment Search Tool (BLAST®) was used for trailing each satDNA in the assembly of durum wheat genome through NCBI's Genome Data Viewer (GDW) and the genome assemblies of both species were compared. Sequence divergence and consensus turnover rate (CTR) between homologous satDNA families of durum and bread wheat were estimated using MEGA11. This study reveals that in an exceedingly short period, significant qualitative and quantitative changes have occurred in the set of satellite DNAs (satDNAs) of both species, with expansions/contractions of the number of repeats and the loci per satellite, different in each species, and a high rate of sequence change for most of these satellites, in addition to the emergence/loss of satDNAs not shared between the two species analysed. These evolutionary changes in satDNA are common between species but what is truly remarkable and novel about this study is that these processes have taken place in less than the last ~8000 years separating the two species, indicating an accelerated evolution of their satDNAs. These results, together with the relationship of many of these satellites with transposable elements and the polymorphisms they generate at the level of centromeres and subtelomeric regions of their chromosomes, are analysed and discussed in the context of the evolutionary origin of these species and the selection pressure exerted by man throughout the history of their cultivation.

Genome-Wide Identification and Molecular Evolutionary History of the Whirly Family Genes in Brassica napus.

Whirly transcription factors are unique to plants, playing pivotal roles in managing leaf senescence and DNA repair. While present in various species, their identification in Brassica napus L. (B. napus) and their differences during hybridization and polyploidy has been elusive. Addressing this, our study delves into the functional and evolutionary aspects of the Whirly gene family during the emergence of B. napus, applying bioinformatics and comparative genomics. We identified six Whirly genes in B. napus. In Brassica rapa L. (B. rapa), three Whirly genes were identified, while four were found in Brassica oleracea L. (B. oleracea). The results show that the identified Whirly genes not only have homology but also share the same chromosomal positions. Phylogenetic analysis indicates that Whirly genes in monocots and dicots exhibit high conservation. In the evolutionary process, the Whirly gene family in B. napus experienced events of intron/exon loss. Collinearity insights point to intense purifying selection post-duplication. Promoter regions housed diverse cis-acting elements linked to photoresponse, anaerobic initiation, and methyl jasmonate responsiveness. Notably, elements tied to abscisic acid signaling and meristem expression were prominent in diploid ancestors but subdued in tetraploid B. napus. Tissue-specific expression unveiled analogous patterns within subfamily genes. Subsequent qRT-PCR analysis spotlighted BnAWHY1b's potential significance in abiotic stress response, particularly drought. These findings can be used as theoretical foundations to understand the functions and effects of the Whirly gene family in B. napus, providing references for the molecular mechanism of gene evolution between this species and its diploid ancestors.

Sexual size dimorphism in mammals is associated with changes in the size of gene families related to brain development

In mammals, sexual size dimorphism often reflects the intensity of sexual selection, yet its connection to genomic evolution remains unexplored. Gene family size evolution can reflect shifts in the relative importance of different molecular functions. Here, we investigate the associate between brain development gene repertoire to sexual size dimorphism using 124 mammalian species. We reveal significant changes in gene family size associations with sexual size dimorphism. High levels of dimorphism correlate with an expansion of gene families enriched in olfactory sensory perception and a contraction of gene families associated with brain development functions, many of which exhibited particularly high expression in the human adult brain. These findings suggest a relationship between intense sexual selection and alterations in gene family size. These insights illustrate the complex interplay between sexual dimorphism, gene family size evolution, and their roles in mammalian brain development and function, offering a valuable understanding of mammalian genome evolution.

Blouch: Bayesian Linear Ornstein-Uhlenbeck Models for Comparative Hypotheses.

Relationships among species in the tree of life can complicate comparative methods and testing adaptive hypotheses. Models based on the Ornstein-Uhlenbeck process permit hypotheses about adaptation to be tested by allowing traits to either evolve towards fixed adaptive optima (e.g., regimes or niches) or track continuously changing optima that can be influenced by other traits. These models allow estimation of the effects of both adaptation and phylogenetic inertia - resistance to adaptation due to any source - on trait evolution, an approach known as the "adaptation-inertia" framework. However, previous applications of this framework, and most approaches suggested to deal with the issue of species non-independence, are based on a maximum likelihood approach and thus it is difficult to include information based on prior biological knowledge in the analysis, which can affect resulting inferences. Here I present Blouch, (Bayesian Linear Ornstein-Uhlenbeck Models for Comparative Hypotheses), which fits allometric and adaptive models of continuous trait evolution in a Bayesian framework based on fixed or continuous predictors and incorporates measurement error. I first briefly discuss the models implemented in Blouch, and then the new applications for these models provided by a Bayesian framework. This includes the advantages of assigning biologically meaningful priors when compared to non-Bayesian approaches, allowing for varying effects (intercepts and slopes), and multilevel modeling. Validations on simulated data show good performance in recovering the true evolutionary parameters for all models. To demonstrate the workflow of Blouch on an empirical dataset, I test the hypothesis that the relatively larger antlers of larger bodied deer are the result of more intense sexual selection that comes along with their tendency to live in larger breeding groups. While results show that larger bodied deer that live in larger breeding groups have relatively larger antlers, deer living in the smallest groups appear to have a different and steeper scaling pattern of antler size to body size than other groups. These results are contrary to previous findings and may argue that a different type of sexual selection or other selective pressures govern optimum antler size in the smallest breeding groups.

Inheritance pattern of Qualitative traits, Genetic analysis and association of yield attributes in F2 populations of Rice (Oryza sativa)

Understanding the extent of genetic variability within the segregating generations is crucial for identifying superior segregants with high yield and better market acceptability. Thus, the present study was carried out to quantify the extent of genetic variation available in the segregating population of rice. Three crosses, viz., CO 55 × IC 457996, CO 55 × IC 464685, and CO 55 × IC 115439 were evaluated using a non-randomized experimental design for six yield attributing and two physical grain quality traits in F2 generation. The inheritance pattern of basal leaf sheath colour and grain colour in CO 55 × IC 115439 indicate digenic complementary gene interaction (9:7), whereas grain colour in CO 55 × IC 464685 exhibits inhibitory gene action (13:3). The positively skewed nature of productive tillers per plant and single-plant yield in the F2 segregants emphasizes the need for intensive selection to facilitate rapid improvement due to the influence of complementary gene action. Moderate to high GCV with high heritability and GAM for traits such as plant height, productive tillers per plant, hundred seed weight, grain width, and single-plant yield in the F2 segregants underscore the prevalence of additive gene action and thus provide the most effective condition for simple phenotypic selection. Moreover, productive tillers per plant and single-plant yield showed a strong positive association in all the crosses. Therefore, productive tillers per plant can be considered an indicator trait when selecting high-yielding segregants for grain yield improvement.

Using high-density SNP data to unravel the origin of the Franches-Montagnes horse breed

BackgroundThe Franches-Montagnes (FM) is the last native horse breed of Switzerland, established at the end of the 19th century by cross-breeding local mares with Anglo-Norman stallions. We collected high-density SNP genotype data (Axiom™ 670 K Equine genotyping array) from 522 FM horses, including 44 old-type horses (OF), 514 European Warmblood horses (WB) from Sweden and Switzerland (including a stallion used for cross-breeding in 1990), 136 purebred Arabians (AR), 32 Shagya Arabians (SA), and 64 Thoroughbred (TB) horses, as introgressed WB stallions showed TB origin in their pedigrees. The aim of the study was to ascertain fine-scale population structures of the FM breed, including estimation of individual admixture levels and genomic inbreeding (FROH) by means of Runs of Homozygosity.ResultsTo assess fine-scale population structures within the FM breed, we applied a three-step approach, which combined admixture, genetic contribution, and FROH of individuals into a high-resolution network visualization. Based on this approach, we were able to demonstrate that population substructures, as detected by model-based clustering, can be either associated with a different genetic origin or with the progeny of most influential sires. Within the FM breed, admixed horses explained most of the genetic variance of the current breeding population, while OF horses only accounted for a small proportion of the variance. Furthermore, we illustrated that FM horses showed high TB admixture levels and we identified inconsistencies in the origin of FM horses descending from the Arabian stallion Doktryner. With the exception of WB, FM horses were less inbred compared to the other breeds. However, the relatively few but long ROH segments suggested diversity loss in both FM subpopulations. Genes located in FM- and OF-specific ROH islands had known functions involved in conformation and behaviour, two traits that are highly valued by breeders.ConclusionsThe FM remains the last native Swiss breed, clearly distinguishable from other historically introgressed breeds, but it suffered bottlenecks due to intensive selection of stallions, restrictive mating choices based on arbitrary definitions of pure breeding, and selection of rare coat colours. To preserve the genetic diversity of FM horses, future conservation managements strategies should involve a well-balanced selection of stallions (e.g., by integrating OF stallions in the FM breeding population) and avoid selection for rare coat colours.

Purifying selection drove the adaptation of mitochondrial genes along with correlation of gene rearrangements and evolutionary rates in two subfamilies of Whitefly (Insecta: Hemiptera).

Insectmitochondrial genomes(mitogenomes) are usually represented by a conserved gene order. Whiteflies exhibit gene rearrangement in their mitogenomes; however, understanding how nucleotide substitution rates shape gene rearrangement in whiteflies is unclear due to the limited number of mitogenomes. Additionally, the mechanisms by which selection pressure drives adaptations in mitochondrial genes in the two subfamilies of whiteflies are not yet known. Here, we analyzed 18 whitefly mitogenomes, including one newly generated mitogenome, to compare nucleotide substitution rates, selection pressure, and gene arrangements. The newly generated mitogenome is reported along with reannotation of Pealius mori and comparisons to other whitefly mitogenomes. Comparative studies on nucleotide composition of 18 whiteflies revealed the positive GC skewness, confirming the reversal of strand asymmetry. We found 11 rearranged gene orders within two subfamilies of whiteflies with 8-18 breakpoints of gene rearrangements. Members of the subfamily Aleyrodinae exhibit more complex pathways in the evolution of gene order as compared to the subfamily Aleurodicinae. Our findings also revealed that the increase or reduction of nucleotide substitution rates does not have an impact on any of the gene rearrangement scenarios depicting neutral correlation. Selection pressure analysis revealed that the mitogenomes from members of both the subfamilies Aleurodicinaeand Aleyrodinae are characterized by intense purifying selection pressure.

O-285 Incompatible gametes: implications for infertility diagnosis and treatment

Abstract Sperm face intense selection in the female reproductive tract (FRT), and in humans usually only very few out of up to hundreds of millions of sperm cells can eventually proceed to the vicinity of an unfertilized oocyte. Traditionally, it has been thought that the primary function of female-induced sperm selection is to eliminate poor-quality sperm from reaching the oocyte. However, recent studies have demonstrated that in many species (including humans) FRT also mediate mate choice at the level of the gametes, which frequently bias fertilization towards the male, which is genetically compatible with the female. Furthermore, emerging evidence indicates that sperm phenotypic and genotypic variation within single ejaculates may allow gamete-level mate choice to act also among high-quality (‘healthy’) sperm and bias fertilization towards genetically compatible sperm haplotypes. I argue that both of these cellular-level mate choice processes can have important consequences for deeper understanding of the mechanistic basis of fertilization and infertility.

An updated phylogeny and adaptive evolution within Amaranthaceae s.l. inferred from multiple phylogenomic datasets.

Amaranthaceae s.l. is a widely distributed family consisting of over 170 genera and 2000 species. Previous molecular phylogenetic studies have shown that Amaranthaceae s.s. and traditional Chenopodiaceae form a monophyletic group (Amaranthaceae s.l.), however, the relationships within this evolutionary branch have yet to be fully resolved. In this study, we assembled the complete plastomes and full-length ITS of 21 Amaranthaceae s.l. individuals and compared them with 38 species of Amaranthaceae s.l. Through plastome structure and sequence alignment analysis, we identified a reverse complementary region approximately 5200 bp long in the genera Atriplex and Chenopodium. Adaptive evolution analysis revealed significant positive selection in eight genes, which likely played a driving role in the evolution of Amaranthaceae s.l., as demonstrated by partitioned evolutionary analysis. Furthermore, we found that about two-thirds of the examined species lack the ycf15 gene, potentially associated with natural selection pressures from their adapted habitats. The phylogenetic tree indicated that some genera (Chenopodium, Halogeton, and Subtr. Salsolinae) are paraphyletic lineages. Our results strongly support the clustering of Amaranthaceae s.l. with monophyletic traditional Chenopodiaceae (Clades I and II) and Amaranthaceae s.s. After a comprehensive analysis, we determined that cytonuclear conflict, gene selection by adapted habitats, and incomplete lineage sorting (ILS) events were the primary reasons for the inconsistent phylogeny of Amaranthaceae s.l. During the last glacial period, certain species within Amaranthaceae s.l. underwent adaptations to different environments and began to differentiate rapidly. Since then, these species may have experienced morphological and genetic changes distinct from those of other genera due to intense selection pressure.

Screening for optimal parameters for modified pharyngeal electrical stimulation for the treatment of dysphagia after stroke in rats

Pharyngeal electrical stimulation (PES), a novel noninvasive peripheral nerve stimulation technique, can effectively improve neurogenic dysphagia and increase the safety and effectiveness of swallowing in the clinic. However, the lack of animal models for dysphagia has limited the mechanistic research on PES, which affects its wide application. Therefore, determining optimal parameters for PES in rats is needed to enable mechanistic studies. Modified PES (mPES), which has different waves and pulse widths from PES, was used; in previous studies mPES was found to have a neurological mechanism like that of PES. A poststroke dysphagia (PSD) model was established, and rats with dysphagia were grouped into three different intensities (0.1 mA, 0.5 mA, and 1 mA) for the selection of optimal intensity and three different frequencies (1 Hz, 2 Hz, and 5 Hz) for the selection of optimal frequency based on a stimulation duration of 10 min in the clinic. A Videofluroscopic Swallow Screen (VFSS) was used to assess swallowing function in rats before and after mPES treatment. The results showed that the 1 mA group had better swallowing function (p < 0.05) than the model group. Compared with the model group, the 1 Hz and 5 Hz groups had the same improvement in swallowing function (p < 0.05). However, the increase in excitatory signals in the sensorimotor cortex was more pronounced in the 5 Hz group than in the other frequency stimulation groups (p < 0.05). Combining the clinical findings with the above results, we concluded that the optimal stimulation parameter for mPES in rats is “frequency: 5 Hz, current intensity: 1 mA for 10 min/day”, which provides a basis for future basic experimental studies of mPES in animals.