Inherent Growth Rate Research Articles

Hypoxia Changes Energy Metabolism and Growth Rate in Non-Small Cell Lung Cancer Cells.

Hypoxia occurs in 80% of non-small cell lung carcinoma (NSCLC) cases, leading to treatment resistance. Hypoxia's effects on NSCLC energetics are not well-characterized. We evaluated changes in glucose uptake and lactate production in two NSCLC cell lines under hypoxia in conjunction with growth rate and cell cycle phase distribution. The cell lines A549 (p53 wt) and H358 (p53 null) were incubated under hypoxia (0.1% and 1% O2) or normoxia (20% O2). Glucose and lactate concentrations in supernatants were measured using luminescence assays. Growth kinetics were followed over seven days. Cell nuclei were stained with DAPI and nuclear DNA content was determined by flow cytometry to determine cell cycle phase. Gene expression under hypoxia was determined by RNA sequencing. Glucose uptake and lactate production under hypoxia were greater than under normoxia. They were also significantly greater in A549 compared to H358 cells. Faster energy metabolism in A549 cells was associated with a higher growth rate in comparison to H358 cells under both normoxia and hypoxia. In both cell lines, hypoxia significantly slowed down the growth rate compared to proliferation under normoxic conditions. Hypoxia led to redistribution of cells in the different cycle phases: cells in G1 increased and the G2 population decreased. Glucose uptake and lactate production increase under hypoxia in NSCLC cells indicated greater shunting of glucose into glycolysis rather than into oxidative phosphorylation compared to normoxia, making adenosine triphosphate (ATP) production less efficient. This may explain the redistribution of hypoxic cells in the G1 cell cycle phase and the time increase for cell doubling. Energy metabolism changes were more prominent in faster-growing A549 cells compared to slower-growing H358 cells, indicating possible roles for the p53 status and inherent growth rate of different cancer cells. In both cell lines, genes associated with cell motility, locomotion and migration were upregulated under chronic hypoxia, indicating a strong stimulus to escape hypoxic conditions.

Relative growth rate (RGR) and other confounded variables: mathematical problems and biological solutions.

Relative growth rate (RGR) has a long history of use in biology. In its logged form, RGR = ln[(M + ΔM)/M], where M is size of the organism at the commencement of the study, and ΔM is new growth over time interval Δt. It illustrates the general problem of comparing non-independent (confounded) variables, e.g. (X + Y) vs. X. Thus, RGR depends on what starting M(X) is used even within the same growth phase. Equally, RGR lacks independence from its derived components, net assimilation rate (NAR) and leaf mass ratio (LMR), as RGR = NAR × LMR, so that they cannot legitimately be compared by standard regression or correlation analysis. The mathematical properties of RGR exemplify the general problem of 'spurious' correlations that compare expressions derived from various combinations of the same component terms X and Y. This is particularly acute when X >> Y, the variance of X or Y is large, or there is little range overlap of X and Y values among datasets being compared. Relationships (direction, curvilinearity) between such confounded variables are essentially predetermined and so should not be reported as if they are a finding of the study. Standardizing by M rather than time does not solve the problem. We propose the inherent growth rate (IGR), lnΔM/lnM, as a simple, robust alternative to RGR that is independent of M within the same growth phase. Although the preferred alternative is to avoid the practice altogether, we discuss cases where comparing expressions with components in common may still have utility. These may provide insights if (1) the regression slope between pairs yields a new variable of biological interest, (2) the statistical significance of the relationship remains supported using suitable methods, such as our specially devised randomization test, or (3) multiple datasets are compared and found to be statistically different. Distinguishing true biological relationships from spurious ones, which arise from comparing non-independent expressions, is essential when dealing with derived variables associated with plant growth analyses.

Population dynamics of western gorillas at Mbeli Bai.

Long-term studies of population dynamics can provide insights into life history theory, population ecology, socioecology, conservation biology and wildlife management. Here we examine 25 years of population dynamics of western gorillas at Mbeli Bai, a swampy forest clearing in Nouabalé-Ndoki National Park, the Republic of Congo. The Mbeli population more than doubled from 101 to 226 gorillas during the study. After adjusting for a net influx of gorillas into the study population, the increase represents an inherent growth rate of 0.7% per year, with 95% confidence limits between -0.7% and 2.6%. The influx of gorillas mainly involved immigration of individuals into existing study groups (social dispersal), but it also included the appearance of a few previously unknown groups (locational dispersal). The average group size did not change significantly during the study, which is consistent with the possibility that western gorillas face socioecological constraints on group size, even when the population is increasing. We found no significant evidence of density dependence on female reproductive success or male mating competition. The distribution of gorillas among age/sex categories also did not change significantly, which suggests that the population had a stable age structure. Our results provide evidence of population stability or growth for some western gorillas (albeit within a small area). The results highlight the value of law enforcement, long-term monitoring, and protected areas; but they do not diminish the importance of improving conservation for this critically endangered species.

Even allocation of benefits stabilizes microbial community engaged in metabolic division of labor.

Microbial communities execute metabolic pathways to drive global nutrient cycles. Within a community, functionally specialized strains can perform different yet complementary steps within a linear pathway, a phenomenon termed metabolic division of labor (MDOL). However, little is known about how such metabolic behaviors shape microbial communities. Here, we derive a theoretical framework to define the assembly of a community that degrades an organic compound through MDOL. The framework indicates that to ensure community stability, the strains performing the initial steps should hold a growth advantage (m) over the "private benefit" (n) of the strain performing the last step. The steady-state frequency of the last strain is then determined by the quotient of n and m. Our experiments show that the framework accurately predicts the assembly of our synthetic consortia that degrade naphthalene through MDOL. Our results provide insights for designing and managing stable microbial systems for metabolic pathway optimization.

Maintained nutrient accumulation in invasive Solidago canadensis in response to competition: Competition tolerance and nutrient accumulation

Successful invasions into native plant communities may depend on critical functional traits of invaders, such as inherent high growth rate and associated massive nutrient absorption and utilization, which are affected by species-dependent soil properties. To test these hypotheses, we grew the invasive plant Solidago canadensis and its co-occurring native species Imperata cylindrica alone or in interspecific competition in soils collected from the stands of either S. canadensis or I. cylindrica. The soil from the S. canadensis stands had much higher available nitrogen, phosphorus and potassium concentrations than that from the I. cylindrica stands, and enhanced the growth of both species to a similar magnitude. Interspecific competition decreased the growth of both species, but S. canadensis was much more tolerant to interspecific competition than I. cylindrica. Soil origin had no effect on the magnitude of the competition tolerance of either species. Nutrient accumulation in shoots was less negatively affected by interspecific competition in S. canadensis than in I. cylindrica and was even maintained in S. canadensis when growing in the soil from the S. canadensis stands. The maintenance of nutrient accumulation in S. canadensis under interspecific competition was mostly achieved through increased or unchanged shoot nutrient concentration. These findings suggest that the successful invasion of S. canadensis into native plant communities is associated with its inherent high capacity of nutrient accumulation, while plant-dependent soil properties seem to play less important roles.

Growth performance, organ attributes, nutrient and caloric utilization in broiler chickens differing in growth rates when fed a corn-soybean meal diet with multienzyme supplement containing phytase, protease and fiber degrading enzymes

Growth performance, organ weight, ceca digesta short chain fatty acids (SCFA), jejunal histomorphometry, tibia ash, apparent retention (AR) of components and caloric efficiency were investigated in broiler chicken strains differing in growth rate fed diets with multienzyme supplement (MES). The strains differed in estimated time to reach 2.1 kg BW: 37, 43, 47, and 50 d and were designated C, F, J, and N, respectively. A corn-soybean meal diet was formulated for 2-phase program (starter and grower) and fed without or with MES containing phytase, protease and fiber-degrading enzymes. A total of 640-day-old chicks (42.3 + 0.01 g/bird) were housed in cages (5 cockerels and 5 pullets/cage) and allocated to give 8 replicates/ strain and diet combination. Equal amount of feed was fed based on observed ad-libitum intake of C strain in the starter (d 0–14) and grower (d 15–28). Body weight was monitored, grab excreta samples taken and at completion of allocated feed one bird per cage necropsied for samples. With exception of P, apparent metabolizable energy corrected for nitrogen (AMEn) and ceca digesta acetic acid, there was no (P > 0.05) interaction between strain and MES on examined responses. Strains differed (P < 0.01) on growth, FCR, gizzard weight, tibia ash, breast weight, ceca digesta concentration of lactic, propionic, and isobutyric acid and caloric efficiency. The final body weight (BW) was 1,344, 1,134, 959, and 916 g/bird for C, F, J, and N, respectively. Corresponding caloric efficiency was 4,930, 5,807, 6,680 and 7,199 kcal/kg BW gain, respectively. Birds fed MES had higher BW gain (P < 0.05) in grower phase, larger gizzard, higher AR of CP, crude fat, neutral detergent fiber, and Ca than non-MES birds. In conclusion, growth rate influenced organ attributes, nutrient, and caloric utilization. Enzyme supplementation improved growth in grower phase and nutrient utilization independent of strain, suggesting that effects of feed enzymes are not influenced by inherent growth rate.

Disregarding reservoirs of disease vectors: A surveillance paradox in Africa.

Disregarding reservoirs of disease vectors: A surveillance paradox in Africa.

Ecosystem engineering creates a new path to resilience in plants with contrasting growth strategies.

Plant species can be characterized by different growth strategies related to their inherent growth and recovery rates, which shape their responses to stress and disturbance. Ecosystem engineering, however, offers an alternative way to cope with stress: modifying the environment may reduce stress levels. Using an experimental study on two seagrass species with contrasting traits, the slow-growing Zostera marina vs. the fast-growing Zostera japonica, we explored how growth strategies versus ecosystem engineering may affect their resistance to stress (i.e. addition of organic material) and recovery from disturbance (i.e. removal of above-ground biomass). Ecosystem engineering was assessed by measuring sulphide levels in the sediment porewater, as seagrass plants can keep sulphide levels low by aerating the rhizosphere. Consistent with predictions, we observed that the fast-growing species had a high capacity to recover from disturbance. It was also more resistant to stress and still able to maintain high standing stock with increasing stress levels because of its ecosystem engineering capacity. The slow-growing species was not able to maintain its standing stock under stress, which we ascribe to a weak capacity for ecosystem engineering regarding this particular stress. Overall, our study suggests that the combination of low-cost investment in tissues with ecosystem engineering to alleviate stress creates a new path in the growth trade-off between investment in strong tissues or fast growth. It does so by being both fast in recovery and more resistant. As such low-cost ecosystem engineering may occur in more species, we argue that it should be considered in assessing plant resilience.

Evaluation of Maternal Penning to Improve Calf Survival in the Chisana Caribou Herd

Evaluation of Maternal Penning to Improve Calf Survival in the Chisana Caribou Herd

Sporocarp δ15N and use of inorganic and organic nitrogen in vitro differ among host-specific suilloid fungi associated with high elevation five-needle pines

Widespread decline of whitebark and limber pines in the northern Rocky Mountains (USA) has created an imperative to understand functional diversity in their ectomycorrhizal associates. Because suilloid fungi are likely important in successful reestablishment of pines the nitrogen-related functional traits of 28 high-elevation suilloid isolates were examined. Radial growth, mass accumulation and mycelial density were measured for isolates on six different nitrogen sources. The δ15N values of suilloid sporocarps used as sources for pure cultures were compared against growth parameters to investigate a possible link between these N-related functional traits. Isolates grew poorly on nitrate and BSA and grew well on glutamine, alanyl-glutamine and ammonium phosphate, with somewhat slower growth on alanine. Isolates and species varied considerably in their growth response to different nitrogen sources. Effective use of nitrate and BSA was uncommon and associated with isolates with high inherent growth rates. Sporocarp δ15N was negatively correlated with relative growth on alanine of the corresponding isolates. Our results suggest strong similarities in N source use patterns of suilloid fungi of whitebark pine origin and those of another high-elevation five-needle stone pine, the Swiss stone pine.

A bifurcation theorem for evolutionary matrix models with multiple traits.

One fundamental question in biology is population extinction and persistence, i.e., stability/instability of the extinction equilibrium and of non-extinction equilibria. In the case of nonlinear matrix models for structured populations, a bifurcation theorem answers this question when the projection matrix is primitive by showing the existence of a continuum of positive equilibria that bifurcates from the extinction equilibrium as the inherent population growth rate passes through 1. This theorem also characterizes the stability properties of the bifurcating equilibria by relating them to the direction of bifurcation, which is forward (backward) if, near the bifurcation point, the positive equilibria exist for inherent growth rates greater (less) than 1. In this paper we consider an evolutionary game theoretic version of a general nonlinear matrix model that includes the dynamics of a vector of mean phenotypic traits subject to natural selection. We extend the fundamental bifurcation theorem to this evolutionary model. We apply the results to an evolutionary version of a Ricker model with an added Allee component. This application illustrates the theoretical results and, in addition, several other interesting dynamic phenomena, such as backward bifurcation induced strong Allee effects.

The second Cushing-Henson conjecture for the Beverton-Holt q-difference equation

In this paper, we study the second Cushing-Henson conjecture for the Beverton-Holt difference equation with periodic inherent growth rate and periodic carrying capacity in the quantum calculus setting. We give a short summary of recent results regarding the Beverton-Holt difference and \(q\)-difference equation and introduce the theory of quantum calculus briefly. Next, we analyze the second Cushing-Henson conjecture. We extend recent studies in [The Beverton-Holt q-difference equation with periodic growth rate, Difference Equations, Discrete Dynamical Systems, and Applications, Springer-Verlag, Berlin, Heidelberg, New York, 2015, pp. 3-14] and state a modified formulation of the second Cushing-Henson conjecture for the Beverton-Holt \(q\)-difference equation as a generalization of existing formulations.

Development of Patient Derived Xenograft Models of Overt Spontaneous Breast Cancer Metastasis: A Cautionary Note.

Several approaches are being evaluated to improve the historically limited value of studying transplanted primary tumors derived by injection of cells from established cell lines for predicting subsequent cancer therapy outcomes in patients and clinical trials. These approaches include use of genetically engineered mouse models (GEMMs) of spontaneous tumors, or patient tumor tissue derived xenografts (PDXs). Almost all such therapy studies utilizing such models involve treatment of established primary tumors. An alternative approach we have developed involves transplanted human tumor xenografts derived from established cell lines to treat mice with overt visceral metastases after primary tumor resection. The rationale is to mimic the more challenging circumstance of treating patients with late stage metastatic disease. These metastatic models entail prior in vivo selection of heritable, phenotypically stable variants with increased aggressiveness for spontaneous metastasis; they were derived by orthotopic injection of tumor cells followed by primary tumor resection and serial selection of distant spontaneous metastases, from which variant cell lines having a more aggressive heritable metastatic phenotype were established. We attempted to adopt this strategy for breast cancer PDXs. We studied five breast cancer PDXs, with the emphasis on two, called HCI-001 and HCI-002, both derived from triple negative breast cancer patients. However significant technical obstacles were encountered. These include the inherent slow growth rates of PDXs, the rarity of overt spontaneous metastases (detected in only 3 of 144 mice), very high rates of tumor regrowths at the primary tumor resection site, the failure of the few human PDX metastases isolated to manifest a more aggressive metastatic phenotype upon re-transplantation into new hosts, and the formation of metastases which were derived from de novo mouse thymomas arising in aged SCID mice that we used for the experiments. We discuss several possible strategies that may be employed to overcome these limitations. Uncovering the basis of the failure to detect a high rate of overt spontaneous distant metastases having a heritable phenotype in PDX models may reveal new insights into the biology and treatment of advanced metastatic disease.

Biogeography of Alaska paper birch (Betula neoalaskana): latitudinal patterns in chemical defense and plant architecture.

The latitudinal herbivory-defense hypothesis (LHDH) predicts that plants near the equator will be more heavily defended against herbivores than are plants at higher latitudes. Although this idea is widely found in the literature, recent studies have called this biogeographic pattern into question. We sought to evaluate the LHDH in a high-latitude terrestrial ecosystem where fire and mammalian herbivores may contribute to selection for higher levels of defensive chemistry. To address this objective, we collected seeds of Alaska paper birch (Betula neoalaskana) from nine locations along two north-south transects between 55 degrees N and 62 degrees N latitudes in western, interior Canada. The birch seeds were planted in pots in a common garden in Madison, Wisconsin, USA. From the resulting seedlings, we determined levels of chemical defense by assessing the density of resin glands, which have been shown to be negatively correlated with browsing. To assess plant architectural traits such as height, mean individual leaf area, and root-to-shoot ratio, we harvested a subset of the birch seedlings. Further, we used these traits to examine growth-defense trade-offs. Contrary to the LHDH, we found a positive correlation between chemical defense and latitude. Investigating relationships with fire, we found a strong positive correlation between resin gland density and percentage of area annually burned (PAAB) around each collection location and also between PAAB and latitude. Additionally, birch seedlings originating from higher latitudes were shorter, smaller-leaved, and rootier than their lower-latitude counterparts. Growth-defense trade-offs were observed in negative correlations between resin gland density and height and leaf size. Seedlings with higher resin gland densities also allocated less biomass to shoots and more to roots. These results further call into question the LHDH and provide specific information about latitudinal trends in plant defense at high, northern latitudes where fire is a major ecosystem driver and mammals are the main herbivores of deciduous trees such as birches. We propose that these interconnected relationships are the key drivers of the positive correlation between defense and latitude in B. neoalaskana. Understanding patterns of boreal plant defense and growth is especially important because high latitude ecosystems are particularly susceptible to climate change. Key words: Alaska paper birch; Betula neoalaskana; biogeography; chemical defense; grotvth-defense trade-offs; inherent growth rate; latitude; latitudinal herbivory-defense hypothesis; papyr'feric acid; plant ar- chitecture; resin glands; root-to-shoot ratio.

Optimal harvesting policy for the Beverton-Holt quantum difference model

In this paper, we introduce exploitation to the Beverton-Holt equation in the quantum calculus time setting. We first give a brief introduction to quantum calculus and to the Beverton-Holt q-difference equation before formulating the harvested Beverton-Holt q-difference equation. Under the assumption of a periodic carrying capacity and periodic inherent growth rate, we derive its unique periodic solution, which globally attracts all solutions. We further derive the optimal harvest effort for the Beverton-Holt q-difference equation under the catch-per-effort hypothesis. Examples are provided and discussed in the last section.

Macroevolution of leaf defenses and secondary metabolites across the genus Helianthus.

Leaf defenses are widely recognized as key adaptations and drivers of plant evolution. Across environmentally diverse habitats, the macroevolution of leaf defenses can be predicted by the univariate trade-off model, which predicts that defenses are functionally redundant and thus trade off, and the resource availability hypothesis, which predicts that defense investment is determined by inherent growth rate and that higher defense will evolve in lower resource environments. Here, we examined the evolution of leaf physical and chemical defenses and secondary metabolites in relation to environmental characteristics and leaf economic strategy across 28 species of Helianthus (the sunflowers). Using a phylogenetic comparative approach, we found few evolutionary trade-offs among defenses and no evidence for defense syndromes. We also found that leaf defenses are strongly related to leaf economic strategy, with higher defense in more resource-conservative species, although there is little support for the evolution of higher defense in low-resource habitats. A wide variety of physical and chemical defenses predict resistance to different insect herbivores, fungal pathogens, and a parasitic plant, suggesting that most sunflower defenses are not redundant in function and that wild Helianthus represents a rich source of variation for the improvement of crop sunflower.

Background losses of woody plant foliage to insects show variable relationships with plant functional traits across the globe

Summary Despite a long history of research, we lack a comprehensive understanding of the reasons behind pronounced variation in foliar losses to insects among plant species. Our aim was to test the hypothesis that plant functional traits and/or ecological strategies are good predictors of the background losses of woody plant foliage to insects (i.e. losses occurring when herbivore populations are at their ‘normal’ densities) at the global scale. We conducted a quantitative synthesis of published and original data on foliar losses of 793 species of woody plants belonging to 128 families from ca. 500 localities world‐wide, representing tropical, temperate and polar climate zones. The background foliar losses to insects varied among plant life forms, increasing from dwarf shrubs to large trees, and were higher in inherently fast‐growing species than in slow‐growing species. These patterns supported predictions of both the apparency and growth rate (resource availability) hypotheses for data combined across localities, but only outside the tropics. Foliar losses to insects slightly but significantly increased with specific leaf area (SLA) in all climate zones. No differences were noted in background herbivory between woody plant species with deciduous and evergreen foliage, with different shade tolerance and with different successional status. Synthesis. Factors affecting the distribution of herbivory among species of woody plants differed among the climate zones, and the predictive power of at least some of the theories/hypotheses addressing plant–herbivore interactions at large spatial scales varies among climates and/or biomes. The average background losses of woody plant foliage to insects across localities can be predicted from the inherent growth rate of the plant species, its life form and SLA, although these plant characteristics jointly explain only a minor part of the total variation observed in the primary data.

Counteraction of antibiotic production and degradation stabilizes microbial communities.

SummaryA major challenge in theoretical ecology is understanding how natural microbial communities support species diversity1-8, and in particular how antibiotic producing, sensitive and resistant species coexist9-15. While cyclic “rock-paper-scissors” interactions can stabilize communities in spatial environments9-11, coexistence in unstructured environments remains an enigma12,16. Here, using simulations and analytical models, we show that the opposing actions of antibiotic production and degradation enable coexistence even in well-mixed environments. Coexistence depends on 3-way interactions where an antibiotic degrading species attenuates the inhibitory interactions between two other species. These 3-way interactions enable coexistence that is robust to substantial differences in inherent species growth rates and to invasion by “cheating” species that cease producing or degrading antibiotics. At least two antibiotics are required for stability, with greater numbers of antibiotics enabling more complex communities and diverse dynamical behaviors ranging from stable fixed-points to limit cycles and chaos. Together, these results show how multi-species antibiotic interactions can generate ecological stability in both spatial and mixed microbial communities, suggesting strategies for engineering synthetic ecosystems and highlighting the importance of toxin production and degradation for microbial biodiversity.

The evolutionary dynamics of a population model with a strong Allee effect.

An evolutionary game theoretic model for a population subject to predation and a strong Allee threshold of extinction is analyzed using, among other methods, Poincaré-Bendixson theory. The model is a nonlinear, plane autonomous system whose state variables are population density and the mean of a phenotypic trait, which is subject to Darwinian evolution, that determines the population's inherent (low density) growth rate (fitness). A trade-off is assumed in that an increase in the inherent growth rate results in a proportional increase in the predator's attack rate. The main results are that orbits equilibrate (there are no cycles or cycle chains of saddles), that the extinction set (or Allee basin) shrinks when evolution occurs, and that the meant trait component of survival equilibria occur at maxima of the inherent growth rate (as a function of the trait).

Response of tree regeneration to experimental gap creation and deer herbivory in north temperate forests

Structural heterogeneity has become a goal of contemporary forest management, yet the effect of incorporating variable sized canopy openings characteristic of older forests on ecosystem services is still largely unknown. Single-tree selection silviculture reduces tree species diversity, and group-selection harvests often produce inconsistent results in maintaining the proportion of species with low or intermediate shade tolerance. It is unclear how much variability is related to inherent growth rate differences among shade tolerance classes, asymmetric competition, sprouting behavior, herbivory, and other factors. We conducted an experiment to control several of these factors. The northern hardwood study area in north-central Wisconsin included 15 replicates of each of 3 sizes of experimental gaps (50m2, 200m2, and 380m2). Ten main plots (80×80m2) were fenced to exclude deer. Vertical height growth of saplings and stump sprouts was monitored for two years pre-treatment and four years post-treatment.Overstory gaps significantly increased height growth rates, but there was no significant difference between rates of the very shade-tolerant Acer saccharum and several midtolerant species in any gap size. Saplings dominated the regeneration layer in small gaps. Stump sprouts were more abundant and grew faster than saplings in large gaps, but after 4years, A. saccharum advance regeneration still predominated in the upper height classes. Deer had limited effects on sapling development or species composition because tall advance regeneration was beyond their reach, but they severely affected the sprout layer. In unfenced plots, the unpalatable Ostrya viriginiana had the tallest sprouts. Overall, midtolerant species made up about 16% of the gap regeneration layer and appear to be increasing their proportion over time. Height growth rates of many saplings and sprouts exceeded 50cm per year, suggesting that successful gap capture would be likely for both shade-tolerance groups under current environmental conditions. The non-significant difference in growth rates between shade-tolerant and midtolerant species across the light gradient could change as more time elapses since gap creation. However, our findings after four years are consistent with other studies in suggesting that there may be no consistent trends in the relative growth responses of shade-tolerant and midtolerant tree species to increased light and gap size.