O2 Flux Research Articles

Bio-irrigation Promotes Reactive Phosphorus Recycling in an Oxidized Sedimentary Environment

Bio-irrigation by burrowing macrofauna regulates benthic functioning via direct and indirect effects on sediment properties, microbial activities, oxygen dynamics, and organic matter and nutrient turnover. The effects of macrofauna bio-irrigation on benthic nitrogen cycling have been thoroughly investigated, whereas those on phosphorus (P) are comparatively understudied. This is surprising as such effects contribute to sediment oxidation and have a large potential to regulate P mobility and increase P retention. Dissolved oxygen (O2) and inorganic phosphorus (DIP) fluxes, pore water chemistry (DIPpw, Fe[II]pw, Mn[II]pw, pHpw, and oxidation–reduction potential (ORPpw)), and solid-phase Fe(III) pools were measured in reconstructed sediments without or with surface (the amphipod Corophium volutator) and deep (the polychaete Alitta succinea) burrowing macrofauna. Sediments and burrowing macrofauna were collected from the Goro Lagoon (Po River Delta, Italy) in April 2022. Measurements were carried out after a 2-week preincubation to allow sediment conditioning by bioturbators (e.g., burrow construction, bio-irrigation, burrow wall oxidation, steady chemical gradients within sediments and between pore and bottom waters). ORPpw analysis suggested that bio-irrigated sediments were less reduced, and Fe solid-phase analysis suggested a tendency towards an increase in the Fe(III) pool in deep bio-irrigated sediments. Both bioturbators stimulated O2 fluxes and DIP recycling (by a factor of ~ 2), and halved DIPpw, Fe(II)pw, and Mn(II)pw concentrations. The amphipod contributed to DIP fluxes via direct excretion, whereas polychaete excretion was negligible. Polychaetes contributed to DIP fluxes by ventilation of deep burrows within DIP-rich pore water. Bio-irrigation by both burrowers simultaneously promoted higher DIP recycling and sediment oxidation, ensuring the mobilization of a limiting nutrient and preventing the accumulation of reduced chemical species in the surface sediment.

Effect of post-deposition annealing on crystal structure of RF magnetron sputtered germanium dioxide thin films

In this work, we demonstrate the growth and phase stabilization of ultrawide bandgap polycrystalline rutile germanium dioxide (GeO2) thin films. GeO2 thin films were deposited using RF magnetron sputtering on r-plane sapphire (Al2O3) substrates. As-deposited films were x-ray amorphous. Postdeposition annealing was performed at temperatures between 650 and 950 °C in an oxygen or nitrogen ambient. Annealing at temperatures from 750 to 950 °C resulted in mixed-phase polycrystalline films containing tetragonal (rutile) GeO2, hexagonal (α-quartz) GeO2, and/or cubic (diamond) germanium (Ge). When nitrogen was used as the anneal ambient, mixed GeO2 phases were observed. In contrast, annealing in oxygen promoted stabilization of the r-GeO2 phase. Grazing angle x-ray diffraction showed a preferred orientation of (220) r-GeO2 for all crystallized films. The combination of O2 annealing and O2 flux during growth resulted in r-GeO2 films with highly preferential alignment. Using electron microscopy, we observed an interfacial layer of hexagonal-oriented GeO2 with epitaxial alignment to the (11¯02) Al2O3 substrate, which may help stabilize the top polycrystalline r-GeO2 film.

The Role of Benthic Fluxes in Acidifying the Bottom Waters in the Northern Gulf of Mexico Hypoxic Zone Based on an Updated Water Column Biogeochemical‐Seabed Diagenetic and Sediment Transport Model

AbstractThe seabed and the water column are tightly coupled in shallow coastal environments. Numerical models of seabed‐water interaction provide an alternative to observational studies that require concurrent measurements in both compartments, which are hard to obtain and rarely available. Here, we present a coupled model that includes water column biogeochemistry, seabed diagenesis, sediment transport and hydrodynamics. Our model includes realistic representations of biogeochemical reactions in both seabed and water column, and fluxes at their interface. The model was built on algorithms for seabed‐water exchange in the Regional Ocean Modeling System and expanded to include carbonate chemistry in seabed. The updated model was tested for two sites where benthic flux and porewater concentration measurements were available in the northern Gulf of Mexico hypoxic zone. The calibrated model reproduced the porewater concentration‐depth profiles and benthic fluxes of O2, dissolved inorganic carbon (DIC), TAlk, NO3 and NH4. We used the calibrated model to explore the role of benthic fluxes in acidifying bottom water during fair weather and resuspension periods. Under fair weather conditions, model results indicated that bio‐diffusion in sediment, labile material input and sediment porosity have a large control on the importance of benthic flux to bottom water acidification. During resuspension, the model indicated that bottom water acidification would be enhanced due to the sharp increase of the DIC/TAlk ratio of benthic fluxes. To conclude, our model reproduced the seabed‐water column exchange of biologically important solutes and can be used for quantifying the role of benthic fluxes in driving bottom water acidification over continental shelves.

Intercomparison of fast airborne ozone instruments to measure eddy covariance fluxes: spatial variability in deposition at the ocean surface and evidence for cloud processing

Abstract. The air–sea exchange of ozone (O3) is controlled by chemistry involving halogens, dissolved organic carbon, and sulfur in the sea surface microlayer. Calculations also indicate faster ozone photolysis at aqueous surfaces, but the role of clouds as an ozone sink is currently not well established. Fast-response ozone sensors offer opportunities to measure eddy covariance (EC) ozone fluxes in the marine boundary layer. However, intercomparisons of fast airborne O3 sensors and EC O3 fluxes measured on aircraft have not been conducted before. In April 2022, the Technological Innovation Into Iodine and GV Environmental Research (TI3GER) field campaign deployed three fast ozone sensors (gas chemiluminescence and a combination of UV absorption with coumarin chemiluminescence detection, CID) together with a fast water vapor sensor and anemometer to study iodine chemistry in the troposphere and stratosphere over Colorado and over the Pacific Ocean near Hawaii and Alaska. Here, we present an instrument comparison between the NCAR Fast O3 instrument (FO3, gas-phase CID) and two KIT Fast AIRborne Ozone instruments (FAIRO, UV absorption and coumarin CID). The sensors have comparable precision < 0.4 % Hz−0.5 (0.15 ppbv Hz−0.5), and ozone volume mixing ratios (VMRs) generally agreed within 2 % over a wide range of environmental conditions: 10 < O3 < 1000 ppbv, below detection < NOx < 7 ppbv, and 2 ppmv < H2O < 4 % VMR. Both instrument designs are demonstrated to be suitable for EC flux measurements and were able to detect O3 fluxes with exchange velocities (defined as positive for upward) as slow as −0.010 ± 0.004 cm s−1, which is in the lower range of previously reported measurements. Additionally, we present two case studies. In one, the direction of ozone and water vapor fluxes was reversed (vO3 = +0.134 ± 0.005 cm s−1), suggesting that overhead evaporating clouds could be a strong ozone sink. Further work is needed to better understand the role of clouds as a possibly widespread sink of ozone in the remote marine boundary layer. In the second case study, vO3 values are negative (varying by a factor of 6–10 from −0.036 ± 0.006 to −0.003 ± 0.004 cm s−1), while the water vapor fluxes are consistently positive due to evaporation from the ocean surface and spatially homogeneous. This case study demonstrates that the processes governing ozone and water vapor fluxes can become decoupled and illustrates the need to elucidate possible drivers (physical, chemical, or biological) of the variability in ozone exchange velocities on fine spatial scales (∼ 20 km) over remote oceans.

Treatment of Anaerobic Digester Liquids via Membrane Biofilm Reactors: Simultaneous Aerobic Methanotrophy and Nitrogen Removal.

Anaerobic digestion (AD) produces useful biogas and waste streams with high levels of dissolved methane (CH4) and ammonium (NH4+), among other nutrients. Membrane biofilm reactors (MBfRs), which support dissolved methane oxidation in the same reactor as simultaneous nitrification and denitrification (ME-SND), are a potential bubble-less treatment method. Here, we demonstrate ME-SND taking place in single-stage, AD digestate liquid-fed MBfRs, where oxygen (O2) and supplemental CH4 were delivered via pressurized membranes. The effects of two O2 pressures, leading to different O2 fluxes, on CH4 and N removal were examined. MBfRs achieved up to 98% and 67% CH4 and N removal efficiencies, respectively. The maximum N removal rates ranged from 57 to 94 mg N L-1 d-1, with higher overall rates observed in reactors with lower O2 pressures. The higher-O2-flux condition showed NO2- as a partial nitrification endpoint, with a lower total N removal rate due to low N2 gas production compared to lower-O2-pressure reactors, which favored complete nitrification and denitrification. Membrane biofilm 16S rRNA amplicon sequencing showed an abundance of aerobic methanotrophs (especially Methylobacter, Methylomonas, and Methylotenera) and enrichment of nitrifiers (especially Nitrosomonas and Nitrospira) and anammox bacteria (especially Ca. Annamoxoglobus and Ca. Brocadia) in high-O2 and low-O2 reactors, respectively. Supplementation of the influent with nitrite supported evidence that anammox bacteria in the low-O2 condition were nitrite-limited. This work highlights coupling of aerobic methanotrophy and nitrogen removal in AD digestate-fed reactors, demonstrating the potential application of ME-SND in MBfRs for the treatment of AD's residual liquids and wastewater. Sensor-based tuning of membrane O2 pressure holds promise for the optimization of bubble-less treatment of excess CH4 and NH4+ in wastewater.

Observed APO Seasonal Cycle in the Pacific: Estimation of Autumn O2 Oceanic Emissions

AbstractIn this work, we investigated the seasonal cycle of atmospheric potential oxygen (APO), a unique tracer of air‐sea gas exchanges of molecular oxygen (O2) and carbon dioxide (CO2), expressed as APO = O2 + 1.1 × CO2. APO data were obtained from flask air samples collected since the late 1990s at three Japanese ground stations and on commercial cargo ships sailing between Japan and Australia/New Zealand, North America, and Southeast Asia. We also analyzed the APO spatial distribution and seasonal cycles with simulations from an atmospheric transport model using climatological oceanic O2 fluxes from an empirical product that relate O2 flux to ocean heat as input. Model simulations reproduced the observed APO seasonal cycles generally well, but with larger amplitudes and earlier occurrence of seasonal minima and maxima than in the observations. Moreover, the observed seasonal cycles exhibited larger APO enhancements than the simulations in autumn and early winter, especially in the North Pacific at 20°N–60°N. These enhancements remained when refining the comparison by adjusting the simulated APO peak‐to‐peak amplitudes and seasonal phases to the observations. This suggests additional O2 emissions in the North Pacific, not well expressed in the air‐sea O2 fluxes used as input for our model simulations. The average autumn enhancement at 40°N–60°N was approximately twice that measured at 20°N–40°N. Confirming previous studies, our results indicate two distinct mechanisms possibly contributing to the additional oceanic O2 emissions: outgassing from a subsurface shallow oxygen maximum at 20°N–40°N and autumn phytoplankton bloom at 40°N–60°N.

Interrogation of Oxidative Pulsed Methods for the Stabilization of Copper Electrodes for CO2 Electrolysis.

Using copper (Cu) as an electrocatalyst uniquely produces multicarbon products (C2+-products) during the CO2 reduction reaction (CO2RR). However, the CO2RR stability of Cu is presently 3 orders of magnitude shorter than required for commercial operation. One means of substantially increasing Cu catalyst lifetimes is through periodic oxidative processes, such as cathodic-anodic pulsing. Despite 100-fold improvements, these oxidative methods only delay, but do not circumvent, degradation. Here, we provide an interrogation of chemical and electrochemical Cu oxidative processes to identify the mechanistic processes leading to stable CO2RR through electrochemical and in situ Raman spectroscopy measurements. We first examine chemical oxidation using an open-circuit potential (OCP), identifying that copper oxidation is regulated by the transient behavior of the OCP curve and limited by the rate of the oxygen reduction reaction (ORR). Increasing O2 flux to the cathode subsequently increased ORR rates, both extending lifetimes and reducing "off" times by 3-fold. In a separate approach, the formation of Cu2O is achieved through electrochemical oxidation. Here, we establish the minimum electrode potentials required for fast Cu oxidation (-0.28 V vs Ag/AgCl, 1 M KHCO3) by accounting for transient local pH changes and tracking oxidation charge transfer. Lastly, we performed a stability test resulting in a 20-fold increase in stable ethylene production versus the continuous case, finding that spatial copper migration is slowed but not mitigated by oxidative pulsing approaches alone.

Echocardiographic surrogate of left ventricular stroke work in a model of brain stem death donors.

The commonest echocardiographic measurement, left ventricular ejection fraction, can not necessarily predict mortality of recipients following heart transplantation potentially due to afterload dependency. Afterload-independent left ventricular stroke work index (LVSWI) is alternatively recommended by the current guideline; however, pulmonary artery catheters are rarely inserted in organ donors in most jurisdictions. We propose a novel non-invasive echocardiographic parameter, Pressure-Strain Product (PSP), as a potential surrogate of catheter-based LVSWI. This study aimed to investigate if PSP could correlate with catheter-based LVSWI in an ovine model of brain stem death (BSD) donors. The association between PSP and myocardial mitochondrial function in the post-transplant hearts was also evaluated. Thirty-one female sheep (weight 47 ± 5 kg) were divided into two groups; BSD (n = 15), and sham neurologic injury (n = 16). Echocardiographic parameters including global circumferential strain (GCS) and global radial strain (GRS) and pulmonary artery catheter-based LVSWI were simultaneously measured at 8-timepoints during 24-h observation. PSP was calculated as a product of GCS or GRS, and mean arterial pressure for PSPcirc or PSPrad, respectively. Myocardial mitochondrial function was evaluated following 6-h observation after heart transplantation. In BSD donor hearts, PSPcirc (n = 96, rho = .547, p < .001) showed the best correlation with LVSWI among other echocardiographic parameters. PSPcirc returned AUC of .825 to distinguish higher values of cardiomyocyte mitochondrial function (cut-off point; mean value of complex 1,2 O2 Flux) in post-transplant hearts, which was greater than other echocardiographic parameters. PSPcirc could be used as a surrogate of catheter-based LVSWI reflecting mitochondrial function.

Reponses of morphological and biochemical traits of bamboo trees under elevated atmospheric O3 enrichment

Dwarf bamboo (Indocalamus decorus) is an O3-tolerant plant species. To identify the possible mechanism and response of leaf morphological, antioxidant, and anatomical characteristics to elevated atmospheric O3 (EO3) concentrations, we exposed three-year-old I. decorus seedlings to three O3 levels (low O3-LO: ambient air; medium O3-MO: Ambient air+70 ppb high O3–HO: Ambient air+140 ppb O3) over a growing season using open-top chambers. Leaf shape and stomatal characteristics, and leaf microscopic structure of I. decorus were examined. The results indicated that 1) the stomata O3 flux (Fst) of HO decreased more rapidly under EO3 as the exposure time increased. The foliar O3 injury of HO and MO occurred when AOT40 was 26.62 ppm h and 33.20 ppm h, respectively, 2) under EO3, leaf number, leaf mass per area, leaf area, and stomata length/width all decreased, while leaf thickness, stomatal density, width, and area increased compared to the control, 3) MDA and total soluble protein contents all showed significantly increase under HO (36.57% and 32.77%) and MO(31.91% and 19.52%) while proline contents only increased under HO(33.27%). 4) MO and HO increased bulliform cells numbers in the leaves by 6.28% and 23.01%, respectively. HO reduced the transverse area of bulliform cells by 13.73%, while MO treatments had no effect, and 5) the number of fusoid cells interspace, the transverse area of fusoid cells interspace, and mesophyll thickness of HO significantly increased by 11.16%, 28.58%, and 13.42%, respectively. In conclusion, I. decorus exhibits strong O3 tolerance characteristics, which stem from adaptions in the leaf's morphological, structural, antioxidant, and anatomical features. One critical attribute was the enlargement of the bulliform cell transverse area and the transverse area of fusoid cells interspace that drove this resistance to O3. Local bamboo species with high resistance to O3 pollution thus need to be promoted for sustained productivity and ecosystem services in areas with high O3 pollution.

Choice of medium affects PBMC quantification, cell size, and downstream respiratory analysis

High-resolution respirometry (HRR) can assess peripheral blood mononuclear cell (PBMC) bioenergetics, but no standardized medium for PBMC preparation and HRR analysis exist. Here, we study the effect of four different media (MiR05, PBS, RPMI, Plasmax) on the count, size, and HRR (Oxygraph-O2k) of intact PBMCs. Remarkably, the cell count was 21 % higher when PBMCs were resuspended in MiR05 than in PBS or Plasmax, causing O2 flux underestimation during HRR due to inherent adjustments. Moreover, smaller cell size and cell aggregation was observed in MiR05. Based on our findings, we propose that Plasmax, PBS or RPMI is more suitable than MiR05 for HRR of intact PBMCs. We provide oxygen solubility factors for Plasmax and PBS and encourage further optimization of a standardized HRR protocol for intact PBMCs.

Linking red blood cell functional phenotypes to environmental tolerance in high-altitude adapted deer mice

Oxygen (O2) is essential for vertebrate life, and complex cardio-respiratory systems have evolved to transport the gas from the environment to each individual cell. Even short disruptions of this O2 flux can have deleterious effects that are linked to numerous disease states. Animals that have adapted to hypoxic environments, such as deer mice ( Peromyscus maniculatus) native to high altitude, can provide valuable insight into naturally evolved solutions to O2 deprivation. Previous work has shown that high-altitude deer mice have evolved a higher hemoglobin O2 affnity and other coordinated changes across the O2 transport cascade that enable higher metabolic rates in hypoxia. Red blood cells (RBC) are the functional unit of O2 and carbon dioxide transport in the blood and play central roles in matching O2 supply and demand in the microcirculation by releasing signaling molecules such as ATP and gasotransmitters; but how these cellular mechanisms respond to hypoxic environments has not been studied. We hypothesized that high-altitude adaptation in deer mice has improved the function of RBCs for cardiovascular gas transport in hypoxia. Lab-raised breeding colonies of deer-mice were established from wild mice caught at low altitude (~400 m in the Great Plains of Nebraska) and at high altitude (~4300 m in the Rocky Mountains of Colorado). Using a common-garden experimental design, third-generation deer mice from high- and low-altitude populations were acclimated to warm normoxia (21°C, 21 kPa O2) or cold hypobaric hypoxia (5°C, 12 kPa O2) for 8 weeks. Blood samples were collected for measurements of hematocrit, hemoglobin concentration, RBC volume, plasma erythropoietin concentration, RBC contents of membrane transport and channel proteins (anion exchanger, aquaporin 1 and rhesus associated glycoprotein) by immunocytochemistry and western blotting, and carbonic anhydrase activity using biochemical techniques. The release of ATP from RBCs was measured in tonometers at decreasing levels of O2 by luminometry, and the vascular sensitivity to ATP was determined by wire myography on second-order mesenteric arteries. Finally, bone marrow samples were collected from the femurs to measure gene expression levels in the erythropoietic tissue. Our experimental design allowed us to examine the interactive effects of cold hypoxic environments on RBC phenotype, by untangling environmentally-induced plasticity from the signatures of adaptation that are unique to high-altitude natives. This work is providing a better understanding of how RBC function participates in matching cardiovascular O2 supply and demand in extreme hypoxia, which has important applications in animal and human health. This work was supported by a NSERC Canada Banting Postdoctoral Fellowship to TSH and a Discovery Grant to GRS. This is the full abstract presented at the American Physiology Summit 2024 meeting and is only available in HTML format. There are no additional versions or additional content available for this abstract. Physiology was not involved in the peer review process.

Impact of stratospheric intrusions on surface ozone enhancement in Hong Kong in the lower troposphere: Implications for ozone control strategy

Understanding the impact of stratospheric intrusion (SI) is crucial for elucidating atmospheric complexities and implications for ozone (O3) control. However, current studies have not focused on the influence of SI on surface O3, thus limiting the effectiveness of control strategies. This study delves into an SI event that occurred from March 5 to 12, 2022, employing a comprehensive integration of the Weather Research and Forecasting model coupled with Chemistry and multi-reanalysis data. The lower tropospheric O3 enhancement in Hong Kong has been noticed, despite the absence of SIs in the upper troposphere. This study employed a comprehensive methodology, integrating the use of a box model to estimate the stratosphere–troposphere exchange (STE) O3 flux, integrated process rate (IPR) analysis to quantify the contributions from individual physical and chemical processes, and tracer methods to detect stratospheric O3. During the deep SI episode, the STE flux peaked at −81.33 × 10−8 kg m−2·s−1, surpassing the monthly average by 15.2-fold. The IPR results indicate that vertical transport within the 0–16 km range contributes between 18.4 and 39.0 ppbv h−1 during the SI event, whereas horizontal advection shows a negative contribution. Stratospheric O3 tagging revealed that SI contributes 15.5–31.3 ppb (29.6–50.2%, respectively, of surface O3) when stratospheric O3 mixes down. Five emission reduction paths were designed in response to the negative impacts of SI. The “anthropogenic VOC (AVOC) only” path was the most efficient; however, when SI contributed 31 ppb on March 9, the “NOx only” path required a 69% reduction, while the “AVOC only” path required an 85% reduction for efficiency. This research not only elucidates the complex interplay between SI and surface O3 concentrations but also emphasizes the significance of refining existing emission reduction paths.

The deepwater oxygen deficit in stratified shallow seas is mediated by diapycnal mixing

Seasonally stratified shelf seas are amongst the most biologically productive on the planet. A consequence is that the deeper waters can become oxygen deficient in late summer. Predictions suggest global warming will accelerate this deficiency. Here we integrate turbulence timeseries with vertical profiles of water column properties from a seasonal stratified shelf sea to estimate oxygen and biogeochemical fluxes. The profiles reveal a significant subsurface chlorophyll maximum and associated mid-water oxygen maximum. We show that the oxygen maximum supports both upward and downwards O2 fluxes. The upward flux is into the surface mixed layer, whilst the downward flux into the deep water will partially off-set the seasonal O2 deficit. The results indicate the fluxes are sensitive to both the water column structure and mixing rates implying the development of the seasonal O2 deficit is mediated by diapcynal mixing. Analysis of current shear indicate that the downward flux is supported by tidal mixing, whilst the upwards flux is dominated by wind driven near-inertial shear. Summer storminess therefore plays an important role in the development of the seasonal deep water O2 deficit.

Atmospheric oxygen as a tracer for fossil fuel carbon dioxide: a sensitivity study in the UK

Abstract. We investigate the use of atmospheric oxygen (O2) and carbon dioxide (CO2) measurements for the estimation of the fossil fuel component of atmospheric CO2 in the UK. Atmospheric potential oxygen (APO) – a tracer that combines O2 and CO2, minimizing the influence of terrestrial biosphere fluxes – is simulated at three sites in the UK, two of which make APO measurements. We present a set of model experiments that estimate the sensitivity of APO simulations to key inputs: fluxes from the ocean, fossil fuel flux magnitude and distribution, the APO baseline, and the exchange ratio of O2 to CO2 fluxes from fossil fuel combustion and the terrestrial biosphere. To estimate the influence of uncertainties in ocean fluxes, we compare three ocean O2 flux estimates from the NEMO–ERSEM, the ECCO–Darwin ocean model, and the Jena CarboScope (JC) APO inversion. The sensitivity of APO to fossil fuel emission magnitudes and to terrestrial biosphere and fossil fuel exchange ratios is investigated through Monte Carlo sampling within literature uncertainty ranges and by comparing different inventory estimates. We focus our model–data analysis on the year 2015 as ocean fluxes are not available for later years. As APO measurements are only available for one UK site at this time, our analysis focuses on the Weybourne station. Model–data comparisons for two additional UK sites (Heathfield and Ridge Hill) in 2021, using ocean flux climatologies, are presented in the Supplement. Of the factors that could potentially compromise simulated APO-derived fossil fuel CO2 (ffCO2) estimates, we find that the ocean O2 flux estimate has the largest overall influence at the three sites in the UK. At times, this influence is comparable in magnitude to the contribution of simulated fossil fuel CO2 to simulated APO. We find that simulations using different ocean fluxes differ from each other substantially. No single model estimate, or a model estimate that assumed zero ocean flux, provided a significantly closer fit than any other. Furthermore, the uncertainty in the ocean contribution to APO could lead to uncertainty in defining an appropriate regional background from the data. Our findings suggest that the contribution of non-terrestrial sources needs to be better accounted for in model simulations of APO in the UK to reduce the potential influence on inferred fossil fuel CO2 using APO.

Structural complexity and benthic metabolism: resolving the links between carbon cycling and biodiversity in restored seagrass meadows

Abstract. Due to large losses of seagrass meadows worldwide, restoration is proposed as a key strategy for increasing coastal resilience and recovery. The emergence of a seagrass meadow is expected to substantially amplify biodiversity and enhance benthic metabolism by increasing primary productivity and respiration. Nevertheless, open questions remain regarding the metabolic balance of aging seagrass meadows and the roles benthic communities within the seagrass ecosystem play in overall metabolism. To address these questions, we investigated a chronosequence of bare sediments and adjacent Zostera marina meadows of 3 and 7 years since restoration alongside a natural meadow located within a high-temperate marine embayment in Gåsö, Sweden. We combined continuous measurements of O2 fluxes using underwater eddy covariance with dissolved inorganic carbon (DIC) and O2 fluxes from benthic chambers during the productive season (July). Based on the ratio between O2 and DIC, we derived site-specific photosynthetic and respiratory quotients, enabling the conversion of eddy covariance fluxes to DIC. We assessed benthic diversity parameters as potential drivers of metabolic flux variability. We observed high rates of gross primary productivity (GPP) spanning −18 to −82 mmolDICm-2d-1, which increased progressively with meadow age. Community respiration (CR) mirrored the GPP trend, and all meadows were net heterotrophic (GPP &lt; CR), with net community productivity (NCP) ranging from 16 to 28 mmolDICm-2d-1. While autotrophic biomass did not increase with meadow age, macrophyte diversity did, elucidating potential effects of niche complementarity among macrophytes on community metabolism. These findings provide valuable insights into how community composition and meadow development relate to ecosystem functioning, highlighting potential tradeoffs between carbon uptake and biodiversity.

Observation of ozone deposition flux and its contribution to stomatal uptake over a winter wheat field in eastern China

Ground-level ozone (O3) poses a significant threat to food security in China. Therefore, it is imperative to conduct a comprehensive scientific evaluation of the potential hazards posed by O3 to agricultural crops. This study continuously observed variation in meteorological factors, O3 concentration, O3 deposition rate and flux, and quantified the distribution characteristics of O3 deposition flux in stomatal and non-stomatal pathways. Results suggested that the O3 dry deposition rate and flux in winter wheat fields exhibited relatively stable variations at night but pronounced fluctuations during the day. Their mean values were 0.31 cm s−1 and -0.0044 μmol m−2·s−1, respectively, with peak values occurring at 08:30 and 14:00. The cumulative O3 total flux during the main growth season of winter wheat was 26.1 mmol m−2, with stomatal and non-stomatal fluxes accounting for 7.7 mmol m−2 and 18.4 mmol m−2, respectively. The proportions of total O3 flux in stomatal and non-stomatal channels were 29.5% and 70.5%, respectively, with daytime proportions being 39.7% and 60.3%, respectively. These findings provide crucial insights for future accurate assessments of crop yield loss due to O3 at the earth's surface.

In chronic kidney disease altered cardiac metabolism precedes cardiac hypertrophy.

Conduit arterial disease in chronic kidney disease (CKD) is an important cause of cardiac complications. Cardiac function in CKD has not been studied in the absence of arterial disease. In an Alport syndrome model bred not to have conduit arterial disease, mice at 225 days of life (dol) had CKD equivalent to humans with CKD stage 4-5. Parathyroid hormone (PTH) and FGF23 levels were one log order elevated, circulating sclerostin was elevated, and renal activin A was strongly induced. Aortic Ca levels were not increased, and vascular smooth muscle cell (VSMC) transdifferentiation was absent. The CKD mice were not hypertensive, and cardiac hypertrophy was absent. Freshly excised cardiac tissue respirometry (Oroboros) showed that ADP-stimulated O2 flux was diminished from 52 to 22 pmol/mg (P = 0.022). RNA-Seq of cardiac tissue from CKD mice revealed significantly decreased levels of cardiac mitochondrial oxidative phosphorylation genes. To examine the effect of activin A signaling, some Alport mice were treated with a monoclonal Ab to activin A or an isotype-matched IgG beginning at 75 days of life until euthanasia. Treatment with the activin A antibody (Ab) did not affect cardiac oxidative phosphorylation. However, the activin A antibody was active in the skeleton, disrupting the effect of CKD to stimulate osteoclast number, eroded surfaces, and the stimulation of osteoclast-driven remodeling. The data reported here show that cardiac mitochondrial respiration is impaired in CKD in the absence of conduit arterial disease. This is the first report of the direct effect of CKD on cardiac respiration.NEW & NOTEWORTHY Heart disease is an important morbidity of chronic kidney disease (CKD). Hypertension, vascular stiffness, and vascular calcification all contribute to cardiac pathophysiology. However, cardiac function in CKD devoid of vascular disease has not been studied. Here, in an animal model of human CKD without conduit arterial disease, we analyze cardiac respiration and discover that CKD directly impairs cardiac mitochondrial function by decreasing oxidative phosphorylation. Protection of cardiac oxidative phosphorylation may be a therapeutic target in CKD.

Influences of downward transport and photochemistry on surface ozone over East Antarctica during austral summer: in situ observations and model simulations

Abstract. Studies of atmospheric trace gases in remote, pristine environments are critical for assessing the accuracy of climate models and advancing our understanding of natural processes and global changes. We investigated the surface ozone (O3) variability over East Antarctica during the austral summer of 2015–2017 by combining surface and balloon-borne measurements at the Indian station Bharati (69.4∘ S, 76.2∘ E, ∼ 35 m above mean sea level) with EMAC (ECHAM5/MESSy Atmospheric Chemistry) atmospheric chemistry–climate model simulations. The model reproduced the observed surface O3 level (18.8 ± 2.3 nmol mol−1) with negligible bias and captured much of the variability (R = 0.5). Model-simulated tropospheric O3 profiles were in reasonable agreement with balloon-borne measurements (mean bias: 2–12 nmol mol−1). Our analysis of a stratospheric tracer in the model showed that about 41 %–51 % of surface O3 over the entire Antarctic region was of stratospheric origin. Events of enhanced O3 (∼ 4–10 nmol mol−1) were investigated by combining O3 vertical profiles and air mass back trajectories, which revealed the rapid descent of O3-rich air towards the surface. The photochemical loss of O3 through its photolysis (followed by H2O + O(1D)) and reaction with hydroperoxyl radicals (O3 + HO2) dominated over production from precursor gases (NO + HO2 and NO + CH3O2) resulting in overall net O3 loss during the austral summer. Interestingly, the east coastal region, including the Bharati station, tends to act as a stronger chemical sink of O3 (∼ 190 pmol mol−1 d−1) than adjacent land and ocean regions (by ∼ 100 pmol mol−1 d−1). This is attributed to reverse latitudinal gradients between H2O and O(1D), whereby O3 loss through photolysis (H2O + O(1D)) reaches a maximum over the east coast. Further, the net photochemical loss at the surface is counterbalanced by downward O3 fluxes, maintaining the observed O3 levels. The O3 diurnal variability of ∼ 1.5 nmol mol−1 was a manifestation of combined effects of mesoscale wind changes and up- and downdrafts, in addition to the net photochemical loss. The study provides valuable insights into the intertwined dynamical and chemical processes governing the O3 levels and variability over East Antarctica.

Probing the exchange of CO2 and O2 in the shallow critical zone during weathering of marl and black shale

Abstract. Chemical weathering of sedimentary rocks can release carbon dioxide (CO2) and consume oxygen (O2) via the oxidation of petrogenic organic carbon and sulfide minerals. These pathways govern Earth's surface system and climate over geological timescales, but the present-day weathering fluxes and their environmental controls are only partly constrained due to a lack of in situ measurements. Here, we investigate the gaseous exchange of CO2 and O2 during the oxidative weathering of black shales and marls exposed in the French southern Alps. On six field trips over 1 year, we use drilled headspace chambers to measure the CO2 concentrations in the shallow critical zone and quantify CO2 fluxes in real time. Importantly, we develop a new approach to estimate the volume of rock that contributes CO2 to a chamber, and assess effective diffusive gas exchange, by first quantifying the mass of CO2 that is stored in a chamber and connected rock pores. Both rock types are characterized by similar contributing rock volumes and diffusive movement of CO2. However, CO2 emissions differed between the rock types, with yields over rock outcrop surfaces (inferred from the contributing rock volume and the local weathering depths) ranging on average between 73 and 1108 tCkm-2yr-1 for black shales and between 43 and 873 tCkm-2yr-1 for marls over the study period. Having quantified diffusive processes, chamber-based O2 concentration measurements are used to calculate O2 fluxes. The rate of O2 consumption increased with production of CO2, and with increased temperature, with an average O2:CO2 molar ratio of 10:1. If O2 consumption occurs by both rock organic carbon oxidation and carbonate dissolution coupled to sulfide oxidation, either an additional O2 sink needs to be identified or significant export of dissolved inorganic carbon occurs from the weathering zone. Together, our findings refine the tools we have to probe CO2 and O2 exchange in rocks at Earth's surface and shed new light on CO2 and O2 fluxes, their drivers, and the fate of rock-derived carbon.

The quandary of sources and sinks of CO2 efflux in tree stems-new insights and future directions.

Stem respiration (RS) substantially contributes to the return of photo assimilated carbon to the atmosphere and, thus, to the tree and ecosystem carbon balance. Stem CO2 efflux (ECO2) is often used as a proxy for RS. However, this metric has often been challenged because of the uncertain origin of CO2 emitted from the stem due to post-respiratory processes. In this Insight, we (i) describe processes affecting the quantification of RS, (ii) review common methodological approaches to quantify and model RS and (iii) develop a research agenda to fill the most relevant knowledge gaps that we identified. Dissolution, transport and accumulation of respired CO2 away from its production site, reassimilation of respired CO2 via stem photosynthesis and the enzyme phosphoenolpyruvate carboxylase, axial CO2 diffusion in the gas phase, shifts in the respiratory substrate and non-respiratory oxygen (O2) consumption are the most relevant processes causing divergence between RS and measured stem gas exchange (ECO2 or O2 influx, IO2). Two common methodological approaches to estimate RS, namely the CO2 mass balance approach and the O2 consumption technique, circumvent some of these processes but have yielded inconsistent results regarding the fate of respired CO2. Stem respiration modelling has recently progressed at the organ and tree levels. However, its implementation in large-scale models, commonly operated from a source-driven perspective, is unlikely to reflect adequate mechanisms. Finally, we propose hypotheses and approaches to advance the knowledge of the stem carbon balance, the role of sap pH on RS, the reassimilation of respired CO2, RS upscaling procedures, large-scale RS modelling and shifts in respiratory metabolism during environmental stress.