As a promising alternative water source to alleviate irrigation water scarcity in red soil regions in southern China, low-quality water could enhance regional water resource utilization and promote sustainable agriculture. However, its soluble salt and ions could affect soil solute distribution and transport, potentially hindering crop growth. Undoubtedly, it is necessary to understand the mechanism of solute transport in red soil under low-quality water irrigation with different water salinity levels. Therefore, a one-dimensional vertical water infiltration experiment and a solute breakthrough experiment were conducted to evaluate the solute transport (soluble salt, Na+, and Cl−) in unsaturated and saturated homogenous red soil at different salinity levels [1 (S1), 2 (S2), 3 (S3), 5 (S5), and 10 (S10) g/L] when irrigated with simulated low-quality water using analytical-grade NaCl. Moreover, the potential factors affecting salt distribution in unsaturated red soil were determined. The findings indicate positive linear relationships between accumulations of three solutes and irrigation water salinity. Generally, the depth of maximum solute concentration increased with the increase in irrigation water salinity. Soluble salt, Na+, and Cl− exhibited early breakthrough and trailing in red soil, but higher irrigation water salinity could reduce PV and retardation. A mobile and immobile water model (MIM) showed that convection was dominant in solute transport in red soil under low-quality water irrigation. D decreased as a power function with increasing irrigation water salinity, while v and R decreased linearly. Furthermore, the red soil can adsorb Cl− resulting from its special charge characteristics under low-quality water irrigation, which may be the main source of salt adsorption. Additionally, v > soil pH > βsalt primarily influenced salt distribution in the 0–40 cm soil profile. This study can provide insights into solute transport in red soil under low-quality water irrigation, facilitating soil fertility and structure, as well as low-quality water irrigation strategy optimization.