Indicators Of Cold Tolerance Research Articles

A method for evaluating cold tolerance in rice during reproductive growth stages under natural low-temperature conditions in tropical highlands in Kenya

ABSTRACT Cold tolerance of New Rice for Africa (NERICA) and their parent varieties was evaluated under natural air temperature conditions of Kenyan tropical highlands using the multiple-sown field evaluation method. Rice varieties were cultivated 10 times to expose them to a shift in temperature during 20-day periods before heading (critical period), measuring the average daily mean temperature during the critical period (Tmean) for each variety and filled grain ratio, which was used as an indicator of cold tolerance. Tmean of each variety was low in 6 out of 10 experiments. In the remaining four high-temperature experiments, there were no significant varietal differences in filled grain ratio. In the six low-temperature experiments, all varieties experienced 20.1−21.5°C Tmean. After comparison under virtually the same cold stress, NERICA 1, 3, 4, 7−10, 12, 17, 18, and WAB 56–104 were judged as cold-tolerant; NERICA 2, 5, 11, 13, and 14, and WAB 56–50 and 181–18 were moderately tolerant, and NERICA 6, 15, and 16 were cold-susceptible varieties. These evaluations generally corresponded with previous experimental results under temperature-controlled environments, showing the practicality of multiple-sown field cold tolerance evaluation in Kenya. It also indicated that NERICA varieties, which recorded different levels of cold tolerance and whose average number of days to heading in all experiments were 66−78, are suitable as a set of standard check varieties in this region to evaluate cold tolerance of rice varieties with this range of days to heading.

Comprehensive Evaluation and Analysis of the Mechanism of Cold Tolerance Based on the Transcriptome of Weedy Rice Seedlings

In this study, the cold-tolerance capacity of 133 varieties of weedy rice was evaluated based on the comprehensive evaluation index D, with Kongyu 131 used as a cold-tolerant control. A total of 39.8% of the 133 varieties were considered ‘strong’, indicating that weedy rice populations indeed have relatively strong cold-tolerance capacity as a whole, and the robust cold-tolerant varieties WR29 and WR157 were identified. Regression analysis showed that the metrics including the nitrogen recovery index, superoxide dismutase (SOD) content and malondialdehyde (MDA) content correlated significantly (P < 0.05) with cold tolerance and could be used as indicators of cold tolerance. On the basis of a transcriptome analysis of WR157, a robust cold-tolerant variety identified in this study, a total of 4645 putative DEGs were identified in treated groups compared to the control groups, with 2123 upregulated DEGs and 2522 downregulated DEGs. All upregulated DEGs were enriched on 1388 terms, all downregulated DEGs were enriched on 1566 terms; 911 of the 2123 upregulated DEGs fell into 98 KEGG categories and 1103 of the 2522 downregulated DEGs were in 115 categories. Further analysis showed that GO:0019740 and GO:0006808 are involved in nitrogen utilization; GO:0009269 and GO:0009414 are related to the stress response; and GO:0016491 and GO:0016614 are related to oxidoreductase activity.BackgroundWeedy rice (Oryza) is a related pest species of cultivated rice (Oryza sativa L.) that has strong abiotic stress resistance; however, the comprehensive mechanism governing its cold tolerance is poorly understood.ConclusionOur comprehensive evaluation based on five morphological indices and nine physiological indicators revealed outstanding levels of cold-tolerance capacity among weedy rice varieties from different regions and revealed some terms related to cold tolerance via transcriptome analysis. Our results underscored the reliable evaluation methods for additional cold tolerance studies and revealed several genes related to cold tolerance, which will help researchers breed cultivated rice varieties to increase their cold-tolerance capacity. These traits have the ability to increase seedling survival rate and growth, as well as future yields.

Environmental filtering of body size and darker coloration in pollinator communities indicate thermal restrictions on bees, but not flies, at high elevations.

BackgroundBees and flies are the two most dominant pollinator taxa in mountain environments of the Southwest USA. Communities of both taxa change dramatically along elevation gradients. We examined whether bee and fly traits would also change along elevation gradients and if so, do they change in a predictable way related to a decrease in temperature as elevation increases.MethodsWe used insect body size and darkness traits as proxies for energetic requirements and indicators of cold tolerance in order to assess patterns of bee and fly community trait differences along an elevation gradient. We examined 1,922 individuals of bees and flies sampled along an elevation gradient ranging from 2,400 meters to 3,200 meters and from 9.6 °C to 5.2 °C mean annual temperature. We examined bees and flies separately using community weighted means (site-level trait values weighted by species abundance) and estimates of environmental filtering (quantified as the inverse of the standardized range of trait values).ResultsBees and flies exhibited two somewhat distinct patterns; (1) Community weighted mean body volume and darkness of bees increased sharply at the highest elevation, and the intensity of environmental filtering also increased with elevation. This was due to both a change among bee populations within a species as well as species replacement at the highest elevation. (2) Community weighted mean body volume and darkness of flies also increased moderately with increasing elevation, but did not exhibit patterns of significant environmental filtering. In fact, the intensity of environmental filtering as indicated by the range of fly body volume weakened with elevation.ConclusionThe increase in filter intensity at high elevations exhibited by bees suggests a significant limitation on the breadth of viable functional strategies for coping with extreme cold, at least within this regional species pool. Flies, on the other hand, do not appear to be limited by high elevations, indicating that the shift from bee to fly dominance at high elevations may be due, at least in part, to greater environmental constraints on bee adaptation to colder environments.

Genome-wide association study Identified multiple Genetic Loci on Chilling Resistance During Germination in Maize

Maize (Zea mays, L.) cultivation has expanded greatly from tropical to temperate zones; however, its sensitivity to chilling often results in decreased germination rates, weak seedlings with reduced survival rates, and eventually lower yields. We conducted germination tests on the maize-282-diverse-panel (282 inbred lines) under normal (25 °C) and chilling (8 °C) conditions. Three raw measurements of germination were recorded under each condition: 1) germination rate, 2) days to 50% germination, and 3) germination index. Three relative traits were derived as indicators of cold-tolerance. By using the 2,271,584 single nucleotide polymorphisms (SNPs) on the panel from previous studies, and genome-wide association studies by using FarmCPU R package to identify 17 genetic loci associated with cold tolerance. Seven associated SNPs hit directly on candidate genes; four SNPs were in high linkage disequilibrium with candidate genes within 366 kb. In total, 18 candidate genes were identified, including 10 candidate genes supported by previous QTL studies and five genes supported by previous gene cloning studies in maize, rice, and Arabidopsis. Three new candidate genes revealed by two associated SNPs were supported by both QTL analyses and gene cloning studies. These candidate genes and associated SNPs provide valuable resources for future studies to develop cold-tolerant maize varieties.

Linkage map construction and QTL mapping for cold tolerance in Oryza rufipogon Griff. at early seedling stage

Cold stress is one of the major restraints for rice production. Cold tolerance is controlled by complex genetic factor. In this study, a backcross inbred lines (BILs) population derived from an inter-specific cross (Oryza sativa L.×O. rufipogon Griff.) was used for genetic linkage map construction and quantitative trait locus (QTL) mapping. A linkage map consisting of 153 markers was constructed, spanning 1 596.8 cM with an average distance of 11.32 cM between the adjacent markers. Phenotypic evaluation of the parents and BILs under (6±1)°C cold stress revealed that the ability of cold tolerance in BILs at early seedling obeyed a skewed normal and continuous distribution. Fifteen QTLs on chromosomes 6, 7, 8, 11, and 12 were identified using survival percent (SP) and non death percent (NDP) as indicators of cold tolerance, which could explain 5.99 to 40.07% of the phenotypic variance, of which the LOD values ranged from 3.04 to 11.32. Four QTLs on chromosomes 3, 5 and 7 were detected using leaf conductivity (LC) and root conductivity (RC) as indicators of cold tolerance, ranging from 19.54 to 33.53% for the phenotypic variance explained and 2.54 to 6.12 for the LOD values. These results suggested that there might be multi major QTLs in O. rufipogon and some useful genes for cold tolerance have been transferred into cultivated rice, which would be helpful for cloning and utilizing the cold tolerance-responsive genes from wild rice.

Identification of QTLs for cold tolerance at seedling stage in rice (Oryza sativa L.) using two distinct methods of cold treatment

Cold water irrigation and growth in low temperature phytotron are two commonly used methods to evaluate cold tolerance of rice at the seedling stage and the cold sensitive seedlings exhibit different injury symptoms, respectively. However, so far no one has systematically dissected the differences of cold tolerance at seedling stage in rice under the two cold environments. We used a recombinant inbred line (RIL) population derived from a cross of a cold-tolerant japonica cultivar, Lijiangxintuanheigu and a cold sensitive indica cultivar, Sanhuangzhan-2 for this study. The cold sensitive seedlings exhibited leaf yellowing after cold water irrigation and leaf rolling during growth in the low temperature phytotron. Leaf yellowing and leaf rolling in RILs was significantly correlated, but the correlation coefficient was low. A total of four quantitative trait locus (QTLs) on chromosomes 1, 6, 9 and 12 were detected using leaf yellowing and percent seedling survival as indicators of cold tolerance after cold water irrigation, while five QTLs on chromosomes 7, 8, 9, 11 and 12 were detected using leaf rolling and percent seedling survival as indicators of cold tolerance during growth in the low temperature phytotron. The two QTLs, qCTS-9 and qCTS-12 were detected using different evaluation indicators under the two cold environments. Our results suggest that rice cold tolerance mechanisms at the seedling stage differ between the two environments, but the detection of common QTL implies the existence of overlap in the metabolic pathways for cold tolerance. The two common QTLs have potential value in rice breeding.

Inheritance of pinacle exsertion in rice

Incomplete panicle exsertion is one of the symptoms of cold injury at the reproductive stage of the rice plant (Oryza sativa L.), which damages grain yield and raises disease incidence. For this reason, panicle exsertion is a better indicator of cold tolerance under field conditions than spikelet sterility, which may also be affected by other climatic factors. This work studies the variability of degree of panicle exsertion in rice, under the Southern Brazilian environmental conditions and determines the inheritance and heritability of this trait. Four rice genotypes of different cool temperature reactions at the reproductive stage were crossed and field evaluated, with the F2 generation, in relation to the degree of panicle exsertion and spikelet fertility. There was variability among the genotypes for panicle exsertion. The F2 generation of the crosses presented continuous distribution and transgressive segregation towards incomplete exsertion, indicating that genes controlling this trait may be complementary distributed between the parents. Heritability was moderate, so selection for complete panicle exsertion should be applied in advanced generations.

Low temperature emergence potential of short season corn hybrids grown under controlled environment and plot conditions

One important reason for limited progress in selecting corn (Zea mays L.) with superior cold tolerance during germination and early growth is the unpredictable occurrence of cold, wet test springs. Breeders need an efficient laboratory test paralleling field emergence under such climatic conditions. Laboratory screening data from 30 corn hybrids with under 2400 corn heat unit ratings were compared to field emergence data in Atlantic Canada to evaluate the usefulness of a laboratory test as an indicator of cold tolerance. Hybrids were ranked by mean percent emergence using 1985–1989 field data collected from seven locations in the Atlantic region. From daily observations on seed germinated in a germinator at 11 °C, mean times to 50% root and coleoptile initiation, and 1-cm coleoptile were calculated using probit analyses. Field emergence ranked from 1 (highest percent) to 30 was compared to ranking of time to 50% 1-cm coleoptile in the laboratory (one represented most rapid growth). Of the top 15 hybrids (by 1-cm coleoptile), 11 fell in the top half of the hybrids ranked by field emergence. Removal of hybrids with low numbers of field observations, all made during the unusually warm spring of 1989, improved the comparison. These results indicate that time to 50% production of a 1-cm coleoptile is a useful screening parameter to select corn hybrids with superior cold tolerance during germination and early growth.Key words: Corn, maize, low temperature tolerance, emergence

Seasonal variation in generation time, diapause and cold hardiness in a central Ohio population of the flesh fly, Sarcophaga bullata

. 1 Generation time, diapause phenology and cold tolerance of the flesh fly, Sarcophaga bullata, were examined under confined natural conditions in central Ohio. In this locality, the fly can complete a maximum of four generations annually. 2 Very few pupae entered diapause in the first and second generations (May to July in 1988). In the third generation (August) 37% of the pupae entered an overwintering diapause, as did all pupae from the fourth generation (September). 3 The adult eclosion date in the spring and annual generation time can be predicted accurately from degree day data. 4 Cold tolerance of the field-overwintering portion of the population was high. After 30 days under field conditions, diapausing pupae readily survived a 7-day exposure to — 17°C. Glycerol appears to be the major cryoprotectant in S.bullata, and glycerol concentrations in the field population (95–142 mm) remained high throughout the winter. 5 In contrast, diapausing flies reared under laboratory conditions (20°C, 12:12 LD) were less cold tolerant, and glycerol concentrations were lower (6.9–21.2 mm). Field conditions thus promote the acquisition of high levels of cold tolerance, presumably as a consequence of the accumulation of higher concentrations of glycerol. 6 In spite of differences in the cold tolerance of laboratory and field flies, the supercooling points of the two groups of flies were nearly the same, thus implying that the supercooling point is not a good indicator of cold tolerance.

LOW-TEMPERATURE TOLERANCE OF SWITCHGRASS (Panicum virgatum L.)

Dry matter production from temperate pasture species is typically very low during midsummer. Switchgrass (Panicum virgatum L.) is being investigated as an alternative pasture species to overcome this problem. We studied two populations over 3 yr to determine if they had sufficient cold tolerance to be used in these areas. Populations selected from cv. Pathfinder were grown in plots at Ottawa and sampled from September to late November in 1985–1987. Each fall, samples were dug at intervals of 2 or 4 wk, the tops and roots trimmed back, then placed in plastic bags in a programmed freezer to determine the temperature at which 50% of the plants were killed (LT50). Percent crown moisture was also measured in the falls of 1985 and 1986. Prior to the onset of cold hardening in September, the two switchgrass populations had LT50 values of −4 °C. Slow cold-hardening occurred to the end of September, followed by a very rapid increase in cold tolerance to −18 °C at the end of October. During November, the rate of hardening decreased and cold tolerance came to a plateau of −19 to −22 °C by the end of the month. The same range has been reported for winter hardy cultivars of timothy and alfalfa. Crown moisture decreased to a plateau several weeks before LT50 values indicating that moisture is of questionable use as an indicator of cold tolerance in switchgrass. Good cold tolerance in switchgrass combined with superior survival during the severe winter of 1982/1983 and vigorous regrowth from overwintering rhizomes lead us to believe that winter hardy cultivars for central and eastern Ontario could be selected from this material.Key words: Switchgrass, Panicum virgatum L., low temperature tolerance, winter survival, forage plant