Indian Ocean Ridge Research Articles

Distribution and influencing factors of microeukaryote in different water layers of the southwestern Indian Ocean Ridge

Distribution and influencing factors of microeukaryote in different water layers of the southwestern Indian Ocean Ridge

Dynamic stratification and biogeochemical cycling response of microbial communities in east indian ocean ridge

Marine harbors a diverse and intricate microbial ecosystem crucial for driving biogeochemical and nutrient cycles. To gain insights into the ecological functions of microbial communities in deep-sea sediments and their responses to biogeochemical cycling, this study investigated microbial dynamics within the East Indian Ocean (EIO) ridge, focusing on vertical stratification of sediment communities. Notably, depth-related microbial patterns surpassed regional stratification effects. Environmental factors, such as TN and NO2–-N, significantly shaped community structures, while stochastic processes, particularly homogenizing dispersal, contributed to spatial similarity and structural stability. In this challenging environment, bacterial and archaeal communities established symbiotic relationships for enhanced survival, and dominated carbon and nitrogen biogeochemical cycling processes, respectively. Key bacterial genera acted as bridging agents, orchestrating intricate interactions, while archaeal communities displayed greater dispersion. Metabolic pathways analyses revealed that bacterial community was characterized by denitrification and DNRA processes, while archaea were dominated by the nirK-encoded denitrification pathway. Ultimately, this study shed light on nuanced interactions and ecological roles of microbial communities, contributed to broader understanding of biogeochemical processes and global carbon/nitrogen sinks.

Whole genome sequencing of a novel sea anemone (Actinostola sp.) from a deep-sea hydrothermal vent

Deep-sea hydrothermal vents are usually considered as extreme environments with high pressure, high temperature, scarce food, and chemical toxicity, while many local inhabitants have evolved special adaptive mechanisms for residence in this representative ecosystem. In this study, we constructed a high-quality genome assembly for a novel deep-sea anemone species (Actinostola sp.) that was resident at a depth of 2,971 m in an Edmond vent along the central Indian Ocean ridge, with a total size of 424.3 Mb and a scaffold N50 of 383 kb. The assembled genome contained 265 Mb of repetitive sequences and 20,812 protein-coding genes. Taken together, our reference genome provides a valuable genetic resource for exploring the evolution and adaptive clues of this deep-sea anemone.

Diversity and biogeography of scale worms in the subfamily Lepidonotopodinae (Annelida: Polynoidae) from Indian Ocean hydrothermal vents with descriptions of four new species

Abstract Lepidonotopodinae is a subfamily of Polynoidae endemic to deep-sea chemosynthetic ecosystems around the world. Nevertheless, their species composition and phylogeny have only been systematically studied in hydrothermal vents of the Eastern and Western Pacific. Here, we morphologically and genetically examined worms in Lepidonotopodinae from vents across three Indian Ocean ridges, revealing two new Branchinotogluma species (B. jiaolongae sp. nov. and B. kaireiensis sp. nov.) and two new Levensteiniella species (L. pettiboneae sp. nov. and L. longqiensis sp. nov.). Primary morphological characters distinguishing them from other congeners include the number and arrangement of both pharyngeal papillae and ventral papillae. The reconstructed molecular phylogeny of Lepidonotopodinae supports a monophyletic Levensteiniella, with the two new Indian Ocean species recovered as sisters. As revealed in previous studies, a paraphyletic Branchinotogluma was also found, with the three Indian Ocean species separated into distinct clades with sister-relationships to species from the Mid-Atlantic, Alarcon Rise, and Manus Basin, respectively. This indicates three separate historical invasions to Indian Ocean vents. Our findings increase the number of Indian Ocean Lepidonotopodinae worms to seven, now the most diverse annelid group there, and help to elucidate the biodiversity, distribution, and biogeography of this subfamily in the Indian Ocean.

Complete genome analysis reveals environmental adaptability of sulfur-oxidizing bacterium Thioclava nitratireducens M1-LQ-LJL-11 and symbiotic relationship with deep-sea hydrothermal vent Chrysomallon squamiferum.

One sulfur-oxidizing bacterium Thioclava sp. M1-LQ-LJL-11 was isolated from the gill of Chrysomallon squamiferum collected from 2700m deep hydrothermal named Longqi on the southwest Indian Ocean ridge. In order to understand its survival mechanism in hydrothermal extreme environment and symbiotic relationship with its host, the complete genome of strain M1-LQ-LJL-11 was sequenced and analyzed. A total of 6117Mb of valid data was obtained, including 4096 coding genes, 61 non coding genes, including 9 rRNAs (among them, there are 3 in 23S rRNA, 3 in 5S rRNA, and 3 in 16S rRNA.), 52 tRNAs and 35 genomic islands. Strain M1-LQ-LJL-11 contains one chromosome and two plasmids. In the genome annotation information of the strain, we found 28 genes including cys sox, sor, sqr, tst related to sulfur metabolism and 17 metal resistance genes. Interestingly, a pair of quorum sensing system which probably regulating biofilm formation located in chromosome was found. These genes are critical for self-adaptation against severe environment as well as host survival. This study provides a basis understanding for the adaptive strategies of deep-sea hydrothermal bacteria and symbiotic relationship with its host in extreme environments through gene level.

Mercury Isotopes in Deep-Sea Epibenthic Biota Suggest Limited Hg Transfer from Photosynthetic to Chemosynthetic Food Webs.

Deep oceans receive mercury (Hg) from upper oceans, sediment diagenesis, and submarine volcanism; meanwhile, sinking particles shuttle Hg to marine sediments. Recent studies showed that Hg in the trench fauna mostly originated from monomethylmercury (MMHg) of the upper marine photosynthetic food webs. Yet, Hg sources in the deep-sea chemosynthetic food webs are still uncertain. Here, we report Hg concentrations and stable isotopic compositions of indigenous biota living at hydrothermal fields of the Indian Ocean Ridge and a cold seep of the South China Sea along with hydrothermal sulfide deposits. We find that Hg is highly enriched in hydrothermal sulfides, which correlated with varying Hg concentrations in inhabited biota. Both the hydrothermal and cold seep biota have small fractions (<10%) of Hg as MMHg and slightly positive Δ199Hg values. These Δ199Hg values are slightly higher than those in near-field sulfides but are 1 order of magnitude lower than the trench counterparts. We suggest that deep-sea chemosynthetic food webs mainly assimilate Hg from ambient seawater/sediments and hydrothermal fluids formed by percolated seawater through magmatic/mantle rocks. The MMHg transfer from photosynthetic to chemosynthetic food webs is likely limited. The contrasting Hg sources between chemosynthetic and trench food webs highlight Hg isotopes as promising tools to trace the deep-sea Hg biogeochemical cycle.

Thermococcus argininiproducens sp. nov., an arginine biosynthesis archaeal species isolated from the Central Indian Ocean ridge.

A strictly anaerobic hyperthermophilic archaeon, designated strain IOH2T, was isolated from a deep-sea hydrothermal vent (Onnuri vent field) area on the Central Indian Ocean Ridge. Strain IOH2T showed high 16S rRNA gene sequence similarity to Thermococcus sibiricus MM 739T (99.42 %), Thermococcus alcaliphilus DSM 10322T (99.28 %), Thermococcus aegaeus P5T (99.21 %), Thermococcus litoralis DSM 5473T (99.13 %), 'Thermococcus bergensis' T7324T (99.13 %), Thermococcus aggregans TYT (98.92 %) and Thermococcus prieurii Bio-pl-0405IT2T (98.01 %), with all other strains showing lower than 98 % similarity. The average nucleotide identity and in silico DNA-DNA hybridization values were highest between strain IOH2T and T. sibiricus MM 739T (79.33 and 15.00 %, respectively); these values are much lower than the species delineation cut-offs. Cells of strain IOH2T were coccoid, 1.0-1.2 µm in diameter and had no flagella. Growth ranges were 60-85 °C (optimum at 80 °C), pH 4.5-8.5 (optimum at pH 6.3) and 2.0-6.0 % (optimum at 4.0 %) NaCl. Growth of strain IOH2T was enhanced by starch, glucose, maltodextrin and pyruvate as a carbon source, and elemental sulphur as an electron acceptor. Through genome analysis of strain IOH2T, arginine biosynthesis related genes were predicted, and growth of strain IOH2T without arginine was confirmed. The genome of strain IOH2T was assembled as a circular chromosome of 1 946 249 bp and predicted 2096 genes. The DNA G+C content was 39.44 mol%. Based on the results of physiological and phylogenetic analyses, Thermococcus argininiproducens sp. nov. is proposed with type strain IOH2T (=MCCC 4K00089T=KCTC 25190T).

Biogeography and potential ecological functions of prokaryotes in the hydrothermal and non-hydrothermal field sediments of the Indian Ocean Ridges

A consensus is emerging on marine microbial biogeography. However, knowledge of the biodiversity and biogeographic patterns of deep-sea microbes and the drivers is far from adequate. In this study, we investigated the diversity and biogeography of prokaryotes at the Indian Ocean Ridges (IOR) using 16S rRNA gene and dsrB sequencing combined with bioinformatics analyses. A total of 39 hydrothermal field sediment (HFS) and non-hydrothermal field sediment (NHFS) samples were collected from the Carlsberg Ridge (CR) and Southwest Indian Ridge (SWIR). Seventy-four prokaryotic phyla were detected in the samples, of which 13 phyla were distributed across all samples. The composition of prokaryotic communities diverged between HFSs and NHFSs, but not between the CR and SWIR. Sixteen phyla were differentially enriched between HFSs and NHFSs. The community structure was significantly correlated to calcium, sulfur, total phosphorus, and total nitrogen, the first three of which were the main distinguishing factors of HFSs and NHFSs. Moreover, a weak distance–decay pattern was observed among the NHFS communities. PICRUSt predictions revealed functional discrepancies in carbon and nitrogen metabolism between the HFS and NHFS communities, and dsrB sequencing analysis indicated higher diversity of sulfate reduction genes and taxa in HFSs than in NHFSs. The diversity and relative abundance of corresponding functional taxa and genes suggested that the nitrogen cycle might be centralized in an energy-generating manner to support the microbial community in NHFSs while the sulfur cycle is more important for the HFS community. These findings provide new insights into microbial biogeography and metabolic differentiation along the IOR that are influenced by hydrothermal activity.

A new report on the deep-sea sponge-associated Spongicoloides weijiaensis Xu, Zhou &amp;amp; Wang, 2017 (Decapoda: Spongicolidae) from the Southwest Indian Ocean Ridge

The sponge-associated benthic shrimp Spongicoloides weijiaensis Xu, Zhou & Wang, 2017 is reported for the first time from the Southwest Indian Ridge (SWIR). A single female specimen of S.weijiaensis was associated with the hexactinellid sponge belonging to Dictyaulus sp. that was collected using a benthic sledge from the southwest Indian Ridge at a water depth of 2358 m. The spongicolid shrimp is reported using both classical taxonomic and molecular tools (cytochrome c oxidase subunit 1-COI). The S. weijiaensis specimen from the SWIR appears to represent a morphological variant that has pigmented eyes, telson with thirteen spines, and a broadly rounded setiferous posterior margin. This new report at a latitude of nearly 26° South on the seamount provides the first Mid Ocean Ridge sector record for stenopodidean shrimp known to date.

Adaptation and evolution of the sea anemone Alvinactis sp. to deep-sea hydrothermal vents: A comparison using transcriptomes.

Sea anemones are diverse and ecologically successful members of Anthozoa. They are often found in intertidal and shallow waters, although a few of them inhabit harsher living conditions, such as deep‐sea hydrothermal vents. Here, we sequenced the transcriptome of the vent sea anemone Alvinactis sp., which was collected from Edmond vent along the central Indian Ocean ridge at a depth of 3275 m, to explore the molecular mechanisms related to adaptation to vents. Compared with another deep‐sea anemone (Paraphelliactis xishaensis) and five shallow water sea anemones, a total of 117 positively selected genes and 46 significantly expanded gene families were found in Alvinactis sp. specifically that may be related to its vent‐specific aspect of adaptation. In addition, 127 positively selected genes and 23 significantly expanded gene families that were found in both Alvinactis sp. and P. xishaensis. Among these, vent‐specific adaptations of Alvinactis sp. may involve genetic alterations in peroxisome, ubiquitin‐mediated protein degradation, oxidative phosphorylation, and endocytosis, and its deep‐sea adaptation may involve changes in genetic information processing. Differentially expressed genes between Alvinactis sp. and the deep‐sea anemone P. xishaensis were enriched in a variety of pathways related to adaptation, such as energy metabolism, genetic information processing, endocytosis, and peroxisomes. Overall, we provided the first transcriptome of sea anemones that inhabit vents, which enriches our knowledge of deep‐sea hydrothermal vent adaptation and the diversity of sea anemones.

A new deep-sea sponge Fibulia occiensis sp. nov. (Poecilosclerida: Dendoricellidae) from the 25 South Oceanic Core Complex in the Central Indian Ocean Ridge.

We describe a new deep-sea sponge species, Fibulia occiensis sp. nov., from the Central Indian Ocean Ridge (CIOR) at Rodrigues Triple Junction (RTJ), of the family Dendoricellidae Hentschel, 1923. Two sponge specimens were collected between 19822079 m depth using a benthic sledge in the 25 South Oceanic Core Complex (OCC) region. The megabenthic fauna was collected to establish a baseline of environmental and benthic ecological data. This data will be handy in assessing the impact of sulfide mining in the near future. Fibulia occiensis sp. nov. is fragile and stalked, has a single type of oxea, and no sigma. The new species is different from the congeneric Fibulia species by its larger oxeas and the strongly curved isochelae.

Delineating biogeographic regions in Indian Ocean deep‐sea vents and implications for conservation

AbstractAimThe pattern of biodiversity and biogeography is crucial to informing management and conservation strategy. But a lack of study across multiple ridge systems, especially for the Carlsberg Ridge, has hampered the conception of the overall picture for the Indian Ocean vents, a top target for deep‐sea exploration of massive sulphides. Here, we aim to characterize fauna from three new vent fields on the Carlsberg Ridge for the first time, and answer 1) what is the biogeographic pattern for vent fauna within the Indian Ocean and 2) how does this pattern guide the future environmental management on the Indian Ocean ridges.LocationVents on the Carlsberg Ridge (CR), Central Indian Ridge (CIR), and Southwest Indian Ridge (SWIR).TaxonMacrofauna.MethodsSamples, still images and videos were collected from vent fields by either submersible or TV‐guided grab. A comprehensive dataset of 11 fields on Indian Ocean ridges were obtained based on taxa identification and compilation. Genetic connectivity was analysed for six species using COI sequences. A framework for identifying biogeographic regions based on beta diversity measurement βsim was employed to reveal species turnover along the Indian Ocean ridges.ResultsFaunal assemblages at three new vents on the CR hosted a total of 34 species. Significant genetic differentiation was detected between southern SWIR and CIR (plus Tiancheng) for three species, and between CIR (plus Tiancheng) and CR for four species. Hierarchical clustering of βsim support division of the Indian Ocean vents into three clades.Main conclusionsSpecies turnover along the ridges supported the separation of Indian Ocean vents into three discrete biogeographic units, boundaries between which largely corresponded to genetic breaks for shared species with lower dispersal capabilities. The results clearly show that the conservation of Indian Ocean vents must target three provinces, simultaneously.

Isolation, Structure Determination, and Semisynthesis of Diphenazine Compounds from a Deep-Sea-Derived Strain of the Fungus Cystobasidium laryngis and Their Biological Activities.

Phenazostatins E-J (1-6), six new diphenazine derivatives, were isolated from the EtOAc extract of the culture broth of a strain of Cystobasidium laryngis derived from deep-sea sediments of the Indian Ocean Ridge. The structures of 1-6 were elucidated based on the HRESIMS and 1D and 2D NMR spectra. The absolute configurations of 1-6, except for 3 and 6, were determined by modified Mosher's method, ECD data analysis, and calculations of optical rotation values. The absolute configurations of 3 and 6 were identified by chemical derivatization and comparing the specific rotation values with those of semisynthetic 3 obtained by the oxidation of 1 and saphenic acid (7). Phenazostatin J (6) was semisynthesized using saphenic acid (7) to prepare additional material for biological testing. During the purification of semisynthetic 6, a side product 9 was obtained from the reaction mixture along with 6. Compounds 1-6, along with previously reported 7 and 8, were assessed for anti-neuroinflammatory activity in LPS-induced BV-2 microglia cells. Compound 6 exhibited the highest anti-neuroinflammatory effect with an IC50 value of 0.30 μM, but it showed cytotoxicity at higher concentrations than 1.0 μM. Accordingly, cytotoxicities of 1-9 were evaluated against six human cancer cell lines. Among tested compounds, 6 and 9 showed potent cytotoxicity (IC50 values: 7.7-72 nM). Especially, 6 exhibited the strongest cytotoxicity with an IC50 value of 7.7 nM against the NUGC-3 (stomach) cell line, displaying 19-fold stronger activity than the positive control, adriamycin.

Indian Ocean Ridge System and Seafloor Hydrothermal Activity

ABSTRACT This paper presents a short review of some of the notable contributions by scientists from several parts of the world in furthering our understanding of the seafloor hydrothermal activity on the Indian Ocean ridges (IOR). Studies to date on the hydrothermal plumes and vents on the IOR and the marine sediments around the vents highlight the complex nature of hydrothermal activity on the Indian Ocean ridge system which is characterised by varying spreading rates, differences in the host rock system and perceptible variations in the chemical composition of the hydrothermal fluids.

Structure and Connectivity of Hydrothermal Vent Communities Along the Mid-Ocean Ridges in the West Indian Ocean: A Review

To date, 13 biologically active hydrothermal vent (HTV) fields have been described on the West Indian Ocean ridges. Knowledge of benthic communities of these vent ecosystems serves as scientific bases for assessing the resilience of these ecosystems under the global effort to strike an elegant balance between future deep-sea mining and biodiversity conservation. This review aims to summarize our up-to-date knowledge of the benthic community structure and connectivity of these Indian vents and to identify knowledge gaps and key research questions to be prioritized in order to assess the resilience of these communities. The HTVs in the West Indian Ocean are home to many unique invertebrate species such as the remarkable scaly-foot snail. While distinct in composition, the macrofaunal communities of the Indian HTVs share many characteristics with those of other HTVs, including high endemism, strong zonation at the local scale, and a simple food web structure. Furthermore, Indian vent benthic communities are mosaic compositions of Atlantic, Pacific, and Antarctic HTV fauna possibly owning to multiple waves of past colonization. Phylogeographic studies have shed new light into these migratory routes. Current animal connectivity across vent fields appears to be highly influenced by distance and topological barriers. However, contrasting differences in gene flow have been documented across species. Thus, a better understanding of the reproductive biology of the Indian vent animals and the structure of their population at the local scale is crucial for conservation purposes. In addition, increased effort should be given to characterizing the vents’ missing diversity (at both the meio and micro-scale) and elucidating the functional ecology of these vents.

Out of the Pacific: A New Alvinellid Worm (Annelida: Terebellida) From the Northern Indian Ocean Hydrothermal Vents

Alvinellids have long been considered to be endemic to Pacific vents until recent discovery of their presence in the Indian Ocean. Here, a new alvinellid is characterized and formally named from recently discovered vents, Wocan, and Daxi, in the northern Indian Ocean. Both morphological and molecular evidences support its placement in the genusParalvinella, representing the first characterized alvinellid species out of the Pacific. The new species, formally described asParalvinella miran. sp. herein, is morphologically most similar toParalvinella hesslerifrom the northwest Pacific, but the two species differ in three aspects: (1), the first three chaetigers are not fused inP. miran. sp., whereas fused inP. hessleri; (2), paired buccal tentacles short and pointed inP. mirabut large and strongly pointed inP. hessleri; (3), numerous slender oral tentacles ungrouped inP. mirabut two groups inP. hessleri. Phylogenetic inference using the concatenated alignments of the cytochrome c oxidase I (COI), 16S rRNA and 18S rRNA genes strongly supports the clustering ofP. mirawith two West Pacific congeners,P. hessleriand an undescribed species (Paralvinellasp. ZMBN). The resulting Indian/West Pacific lineage suggests a possible invasion into the Indian Ocean from the West Pacific. This is the third polychaete reported from Wocan hydrothermal field. Among the three species, two includingP. miraandHesiolyra heteropoda(Annelida:Hesionidae) are present in high abundance, forming an alvinellids/hesionids-dominated polychaete assemblage distinct from that at all other Central Indian Ridge and Southwest Indian Ridge vents. Thus, this study expands our understanding of alvinellid biogeography beyond the Pacific, and adds to the unique biodiversity of the northern Indian Ocean vents, with implications for biogeographic subdivision across the Indian Ocean ridges.

Revised species records reveal the Canary Islands as a cephalopod biodiversity hotspot

Cephalopods are a diverse group of species, with a high ecological and economic relevance. Despite this, its species diversity has been studied in few places at regional scale. We herein aim to update the current state of knowledge and diversity of cephalopods fauna of the Canary Islands. We carried out a systematic review of the available literature regarding cephalopod species in the area spanned from 1834 to 2019. More specifically, we reviewed (a) records of historic and recent research cruises; (b) records of species from scientific literature and technical reports; and (c) stomach contents analysis of top predators. A total of 48 documents, including scientific literature, technical reports, and species referenced in museums collections of cephalopods caught around the Canary Islands were identified. The current species richness in different habitats from coastal to deep-sea zones was determined according to records and previous information on the ecology of each species. These records revealed that this small archipelago holds 85 confirmed species belonging to 31 families, representing ca. 10% of the overall known cephalopod diversity. The cephalopod community was dominated by oceanic cephalopods, followed by shelf-slope and coastal cephalopods species with 65, 11, and 9 species, respectively. 47% of the species showed a wide geographic distribution (33 cosmopolitan and 7 presents in more than one ocean), whereas 19 are only encountered in the Atlantic Ocean and Mediterranean Sea and 26 are exclusively Atlantic. This species richness is comparable to other cephalopod biodiversity hotspots, such as the Indian Ocean Ridge or the Caribbean. The Canarian cephalopod diversity likely to be underestimated, since scarce information exists on species inhabiting the deeper water layers around the Canary Islands. This work represents the first baseline of cephalopod biodiversity around the Canary Islands; hence, it constitutes a first step to develop future research on this taxonomic group.

Molecular phylogenetic and morphological analyses of the ‘monospecific’ Hesiolyra (Annelida: Hesionidae) reveal two new species

Although many deep-sea species are considered to have transoceanic distribution, this assumption has rarely been critically tested. Using Hesiolyra (Hesionidae) as a case study, we show that careful molecular and morphological analyses are required for refuting/accepting claims about such wide distribution. Hesiolyra is a genus of polychaetes commonly found in hydrothermal vents of the Eastern Pacific, Atlantic and Indian Ocean. Nevertheless, H. bergi Blake, 1985, a species originally described from the Eastern Pacific Rise (EPR), is the only recognized species in this genus. Phylogenetic analyses based on the COI and 16 S rRNA genes revealed two monophyletic clades that were distinct from a clade consisting of H. bergi sequences. We erected two new species of Hesiolyra, herein named as H. longqiensisn. sp. from the Southwest Indian Ridge (SWIR) and H. heteropodan. sp. from the Central Indian Ridge (CIR) and the Carlsberg Ridge (CR). Among them, H. longqiensisn. sp. is more closely related to H. bergi than to H. heteropodan. sp. . Morphologically, the two newly described species can be easily distinguished from H. bergi. The notopodia and neuropodia of H. bergi and H. longqiensisn. sp., are of similar sizes, but the morphology of their lyrate chaetae and their dorsal cirri alternation patterns are different. In H. heteropodan. sp., the notopodia are remarkably slimmer than the neuropodia, and it lacks lyrate chaetae. Overall, in this report two new species of Hesiolyra from the Indian Ocean ridges and show that the distribution of H. bergi is restricted to the Eastern Pacific Rise. Future exploration of other mid-ocean ridges is required to discover the true diversity of this genus of polychaetes inhabiting hydrothermal vent fields.

Wocania indica gen. nov., sp. nov., isolated from deep sea hydrothermal sulfide in the northwest Indian Ocean, and proposal to reclassify Flaviramulus ichthyoenteri as Wocania ichthyoenteri comb. nov.

A novel Gram-stain-negative, non-motile, strictly aerobic, rod-shaped bacterium was isolated from deep-sea hydrothermal sulfide in the northwest Indian Ocean Ridge and designated as strain IOP_32T. Strain IOP_32T could grow at 4-40 °C (optimum, 37 °C), pH 5-9 (optimum, pH 7-8) and salinity of 0-12 % NaCl (w/v; optimum, 2-3 %). The 16S rRNA gene sequence of strain IOP_32T is most similar to Bizionia fulviae EM7T, Bizionia berychis RA3-3-1T, Bizionia paragorgiae KMM 6029T and Oceanihabitans sediminis S9_10T with 95.5-95.3 % similarity. The phylogenomic analysis indicated that strain IOP_32T forms a distinct lineage with Flaviramulus ichthyoenteri Th78T within the family Flavobacteriaceae. The average nucleotide identity, average amino acid identity and percentage of conserved protein values between strain IOP_32T and the type strains of close genera were 72.3-78.5 %, 67.4-76.9 % and 56.3-61.6 %, respectively. The major cellular fatty acid was anteiso-C15 : 0. The respiratory quinone was MK-6. The polar lipids were mainly composed of phosphatidylethanolamine, an unidentified aminophospholipid and five unidentified polar lipids. Strain IOP_32T is significantly different from related genera, which is reflected by the wide adaptability to temperature and salinity levels, the composition of phospholipids and fatty acids, and the results of phylogenetic analyses. The phenotypic properties and phylogenetic data suggest that the lineage represents a novel genus and species within the family Flavobacteriaceae, for which the name Wocania indica gen. sp. nov. is proposed, with the type strain IOP_32T (=MCCC 1A14017 T=KCTC 62660 T). We also propose the reclassification of Flaviramulus ichthyoenteri as Wocania ichthyoenteri comb. nov. (Th78T=DSM 26285T=JCM 18634T=KCTC 32142T).

Understanding what we cannot see: a genetic approach to the mating system of the Southern Lanternshark, Etmopterus granulosus

The Southern Lanternshark, Etmopterus granulosus, is a deep-sea shark commonly found throughout the oceans of the southern hemisphere and frequently caught as bycatch in deep-sea fisheries. Despite its common occurrence, little is known about this species’ life history and reproductive biology. Here, we develop species-specific microsatellite markers to better understand the mating system of E. granulosus. Eighteen litters were opportunistically collected as bycatch along the Madagascar Ridge, Walter’s Shoal, and Southern Indian Ocean Ridge. Novel microsatellite loci were used to test for the presence and frequency of multiple paternity and morphological data were obtained from mothers to examine whether litter size or polyandry correlated with female size. Multiple paternity was found in 33% of litters, but no significant relationship between either litter size or the occurrence of polyandry and female size was found, although some adult individuals were found to have high internal relatedness. The frequency of multiple paternity in conjunction with these other factors could be indicators of mating between relatives or a reduction in population size due to fishing pressure.