Chemokine C-X-C motif ligand 13 (CXCL13), originally identified as a B-lymphocyte chemokine, exerts a crucial role in the chemotaxis of B cells through its receptor CXCR5. Although the presence of CXCL13/CXCR5 had been reported in various teleost fish species, its impact on IgM+ B cell still remains unknown. In this study, we investigated the role of chemokine CXCL13 and its receptor CXCR5 in the chemotaxis of IgM+ B cells in Nile tilapia (Oreochromis niloticus). We identified and characterized two isotypes of OnCXCL13 (OnCXCL13a and OnCXCL13b) and CXCR5 (OnCXCR5) in Nile tilapia. The OnCXCL13 is characterized with a typical small cytokine CXC domain and four cysteine, in which the first two cysteines separated by a random amino acid residue, and OnCXCR5 is characterized by seven α-helical transmembrane domains. Both OnCXCL13 and OnCXCR5 were found to be expressed in various tissues and lymphocytes, with the highest expression in the spleen (SPL). Their expression in IgM+ B cells was significantly higher than that in IgM− lymphocytes. Following Streptococcus agalactiae infection, the expressions of OnCXCL13a and OnCXCL13b were up-regulated in peripheral blood (PBL), SPL and head kidney (HK), while OnCXCR5 was significantly up-regulated in SPL and HK. We also found that the recombinant OnCXCL13 proteins had strong chemotactic activity on IgM+ B cells, which could be inhibited by blocking OnCXCR5 with anti-OnCXCR5 antibody. Mechanistically, incubation with OnCXCL13 resulted in the up-regulation of AKT and STAT3 phosphorylation in IgM+ B cells, which could be attenuated by specific inhibitors of AKT and STAT3. Inhibition of AKT and STAT3 also weakened the chemotaxis of OnCXCL13 on IgM+ B cells. Our results suggest that the CXCL13/CXCR5 axis participates in the immune response of tilapia and mediates the chemotaxis of IgM+ B cells, providing insights into the potential role of this axis in bacterial infection and teleost B cell migration.