Macrocyclic Imines Research Articles

Preferential Formation of Three-layered Host-Guest Complexes of a Planar Dinuclear Metallohost with Alkali Metal Ions.

We synthesized a planar macrocyclic dinuclear nickel(II) metallohost from the corresponding macrocyclic imine ligand containing two N2O2 chelate coordination sites and an O6 cation binding site like 18-crown-6 as well as peripheral hexyl groups. Due to the lipophilic nature of the hexyl groups, the metallohost was soluble in less polar media where its interaction with alkali metal ions was enhanced. The binding studies by NMR spectroscopy clearly showed its strong tendency to form multi-layered structures. The metallohost formed 2 : 1 and 1 : 1 (host/guest) complexes with Na+ with the two-step binding constants of logK1=6.6 and logK2=3.0. In contrast, its complexation with larger alkali metal ions (K+, Rb+, Cs+) preferentially gave 3 : 2 (host/guest) complexes when 2/3 equiv. of the guest was present. The three-layered structures of these 3 : 2 complexes were well characterized by mass spectrometry and 2D COSY/ROESY experiments as well as DFT calculations, elucidating their unique structural feature with three chemically different environments due to the oppositely curved two [Ni(saloph)] moieties of the metallohost. Therefore, the three-layered structures were preferentially formed when larger alkali metal ions (K+, Rb+, Cs+) were complexed with the metallohost.

Dynamic and solid-state behaviour of bromoisotrianglimine.

Solid-state materials formed from discrete imine macrocycles have potential in industrial separations, but dynamic behaviour during both synthesis and crystallisation makes them challenging to exploit. Here, we explore opportunities for structural control by investigating the dynamic nature of a C-5 brominated isotrianglimine in solution and under crystallisation conditions. In solution, the equilibrium between the [3 + 3] and the less reported [2 + 2] macrocycle was investigated, and both macrocycles were fully characterised. Solvent templating during crystallisation was used to form new packing motifs for the [3 + 3] macrocycle and a previously unreported [4 + 4] macrocycle. Finally, chiral self-sorting was used to demonstrate how crystallisation conditions can not only influence packing arrangements but also shift the macrocycle equilibrium to yield new structures. This work thus exemplifies three strategies for exploiting dynamic behaviour to form isotrianglimine materials, and highlights the importance of understanding the dynamic behaviour of a system when designing and crystallising functional materials formed using dynamic covalent chemistry.

Social Self-Sorting of Quasi-Racemates: A Unique Approach for Dual-Pore Molecular Crystals.

Despite recent advances in porous organic molecular crystals, the engineering of dual-pore systems within the intermolecular voids remains a significant challenge. In this study, we have achieved the crystallization-induced social self-sorting of "quasi-racemic" dialdehydes into a macrocyclic imine. X-ray crystallographic analysis unambiguously characterizes the resulting structure as incorporating two quasi-racemate pairs with four diamine molecules. Notably, different alkyl substituents on the quasi-racemates afford two types of one-dimensional pores within the macrocyclic imine crystal. The different adsorption properties of these pores were substantiated through adsorption experiments. An intriguing helical arrangement of guest molecules was observed within one of the pores. This study provides pioneering evidence that the social self-sorting of quasi-racemates offers a new methodology for creating dual-functional supramolecular materials.

Triply Adaptive Libraries of Dynamic Covalent Macrocycles: Switching between Sorted and Unsorted States.

Dynamic noncovalent and covalent chemistries have enabled the constitutional modulation of chemical entities within chemical dynamic systems. The switching between order and disorder, i.e., self-sorted and unsorted states of constitutional dynamic libraries, remains challenging. Herein, we study the adaptive behaviors of a dynamic library of imine macrocycles generated from dialdehydes and diamines, seeking ways to exert control over sorting and unsorting processes. The distribution of constituents in the present library of dynamic macrocycles is modulated in response to internal and external effectors (e.g., time, metal cations, and chemical fuels), resulting in the transient amplification of self-sorted constituents in out-of-equilibrium states. The present study showcases higher complexity in systems subject to multiple adaptation through the dynamic interconversion between singularity/order and diversity/disorder.

Neighboring Effects of Sulfur Oxidation State on Dynamic Covalent Bonds and Assemblies.

The impact of a varied sulfur oxidation state (sulfide, sulfoxide, and sulfone) on imine dynamic covalent chemistry is presented. The role of noncovalent interactions, including chalcogen bonds and CH hydrogen bonds, on aldehyde/imine structures and imine exchange reactions was elucidated through experimental and computational evidence. The change in the sulfur oxidation state and diamine linkage further allowed the regulation of imine macrocycles, providing a platform for controlling molecular assemblies.

The Cyclic Imine Core Common to the Marine Macrocyclic Toxins Is Sufficient to Dictate Nicotinic Acetylcholine Receptor Antagonism.

Macrocyclic imine phycotoxins are an emerging class of chemical compounds associated with harmful algal blooms and shellfish toxicity. Earlier binding and electrophysiology experiments on nAChR subtypes and their soluble AChBP surrogates evidenced common trends for substantial antagonism, binding affinities, and receptor-subtype selectivity. Earlier, complementary crystal structures of AChBP complexes showed that common determinants within the binding nest at each subunit interface confer high-affinity toxin binding, while distinctive determinants from the flexible loop C, and either capping the nest or extending toward peripheral subsites, dictate broad versus narrow receptor subtype selectivity. From these data, small spiroimine enantiomers mimicking the functional core motif of phycotoxins were chemically synthesized and characterized. Voltage-clamp analyses involving three nAChR subtypes revealed preserved antagonism for both enantiomers, despite lower subtype specificity and binding affinities associated with faster reversibility compared with their macrocyclic relatives. Binding and structural analyses involving two AChBPs pointed to modest affinities and positional variability of the spiroimines, along with a range of AChBP loop-C conformations denoting a prevalence of antagonistic properties. These data highlight the major contribution of the spiroimine core to binding within the nAChR nest and confirm the need for an extended interaction network as established by the macrocyclic toxins to define high affinities and marked subtype specificity. This study identifies a minimal set of functional pharmacophores and binding determinants as templates for designing new antagonists targeting disease-associated nAChR subtypes.

High-efficiency non-thermal plasma synthesis of imine macrocycles

Non-thermal plasma synthesis offers efficient access to imine macrocycles.

Double n→π* Interactions with One Electron Donor: Structural and Mechanistic Insights.

Double n→π* interactions between one common electron donor of the carbonyl oxygen and two individual acceptor aldehyde/imine units are presented. The structural and mechanistic insights were revealed through a collection of experimental and computational evidence. The orientation and further energetic dependence of orbital interactions were facilely regulated by the size of cyclic urea scaffolds, the bulkiness of aldehydes/imines, and the flexibility of imine macrocycles.

Photoresponsive Dissipative Macrocycles Using Visible-Light-Switchable Azobenzenes.

Visible light can be used to shift dynamic covalent imine assemblies out of equilibrium. We studied a fluorinated azobenzene building block that reliably undergoes geometric isomerism upon irradiation. The building block was used in combination with two different amines, ethylenediamine and R,R-1,2-diaminocyclohexane, to create a library of imine macrocycles. Whereas the simple amine can be used to access a polymeric state and a defined bowl-shaped macrocycle, the chiral amine gives access to a rich network of macrocycles that undergo both isomerisation as well as interconversion between different macrocyclic species, thereby allowing for control over the number of monomers involved in the cyclo-oligomerization; 1 H- and 19 F-DOSY NMR, MALDI-MS measurements, and UV/Vis spectroscopy were used to study the processes.

Imine- and Amine-Type Macrocycles Derived from Chiral Diamines and Aromatic Dialdehydes.

The condensation of aromatic dialdehydes with chiral diamines, such as 1,2-trans-diaminocyclohexane, leads to various enantiopure or meso-type macrocyclic Schiff bases, including [2 + 2], [3 + 3], [4 + 4], [6 + 6] and [8 + 8] condensation products. Unlike most cases of macrocycle synthesis, the [3 + 3] macrocycles of this type are sometimes obtained in high yields by direct condensation without a metal template. Macrocycles of other sizes from this family can often be selectively obtained in high yields by a suitable choice of metal template, solvent, or chirality of the building blocks. In particular, the application of a cadmium(II) template results in the expansion of the [2 + 2] macrocycles into giant [6 + 6] and [8 + 8] macrocycles. These imine macrocycles can be reduced to the corresponding macrocyclic amines which can act as hosts for the binding of multiple cations or multiple anions.

Cross-reactive binding versus selective phosphate sensing in an imine macrocycle sensor

<h2>Summary</h2> We demonstrate a new approach to chemosensors suited for analysis of phosphate mixtures. Here, a combination of a cross-reactive receptor and an environmentally sensitive fluorophore allows for binding various phosphates and obtaining analyte-specific fluorescence response. We have investigated a flexible and cross-reactive imine-pyrrole macrocycle comprising both hydrogen-bond donors and acceptors, one that is capable of self-organizing in response to phosphate-type anions. This cross-reactive binding was elucidated by theoretical and nuclear magnetic resonance (NMR) studies. Incorporating an environmentally sensitive dansyl fluorophore, which responds to the presence of analytes with a varying degree of fluorescence amplification, resulted in translating the cross-reactive binding into variable analyte response and enabled differentiation of oxyanions. The trend of anion affinities is H₂PO₄⁻>AMP>H₂P₂O7²⁻>ADP>ATP. We show that only one sensor can differentiate among various phosphates including their mixtures. By applying machine learning algorithms, we were able to differentiate between 12 anions and accurately quantify ATP, ADP, AMP, PPi, Pi, and their mixtures.

Monomeric and dimeric nitrate lanthanide(III) and yttrium(III) coordination compounds of (2 + 2) imine macrocycle derived from 2,6-diformylpyridine and trans-1,2-diaminocyclopentane

Monomeric nitrate coordination compounds [Ln(L1)](NO3)3·nH2O (Ln = Y(III), Tm(III), Yb(III) and Lu(III)); n = 0, 0.75 or 3)11For simplicity of description we included the Y(III) in the abbreviation of Ln(III), commonly reserved for lanthanide(III) ions. It is well known that although yttrium does not belong to the lanthanides, the ionic radius of the Y(III) cation is similar to ionic radii of lanthanide(III) cations. Y(III) coordination compounds resemble very much in their chemical properties those of the respective lanthanide(III) coordination compounds. of the chiral macrocyclic (2 + 2) imine L1 (L1RRRR, L1SSSS and/or L1rac), derived from enantiomerically pure or racemic trans-1,2-diaminocyclopentane (DACP) and 2,6-diformylpyridine (DFP), have been synthesized in the templated condensation of precursors in the presence of appropriate metal salts. From these monomers their homochiral μ-hydroxodimers [Ln2(L1)2(μ-OH)2](NO3)4·nH2O (Ln = Y(III), Tm(III), Yb(III) and Lu(III)); n = 4, 5 or 7) have been obtained and isolated by addition of NaOH to the respective monomeric form of coordination compound solution. All synthesized coordination compounds have been characterized by NMR spectroscopy, mass spectrometry, elemental analyses and/or circular dichroism (CD). 1H NMR signals of CDCl3/CD3OD solutions of the diamagnetic Y(III) and Lu(III) monomers have been assigned on the basis of their COSY and HMQC spectra, and for the remaining paramagnetic lanthanide coordination compounds (Tm(III) and Yb(III)) the signals were tentatively assigned on the basis of linewidths analyses. 1H NMR signals of D2O solutions of diamagnetic Y(III) and Lu(III) representatives of dimeric species have been established taking into account their COSY, HMQC, HMBC and NOESY spectra. The NOESY spectra confirm that the structure of the dimmers observed in solids is also maintained in a solution.The axial ligand exchange in all monomeric coordination compounds was investigated by 1H NMR titration experiments with acetate and chloride anions in organic solvents as well as with hydroxide anion in D2O. The formation of homochiral heterobimetallic μ-hydroxodimers [Ln’Ln”(L1)2(μ-OH)2](NO3)4 was investigated in a solution by mixing the solutions of two different [Ln’2(L1)2(μ-OH)2](NO3)4·nH2O and [Ln”2(L1)2(μ-OH)2](NO3)4·nH2O homochiral homobimetallic precursors. This experiment proves the chiral recognition between two macrocyclic units of the same chirality in a solution. The μ-hydroxodimers may convert with time to the corresponding peroxo-dimers of the general formula [Ln2(L1)2(μ-η2: η2-O2)](NO3)4.The X-ray crystal structures of the representative monomeric and dimeric coordination compounds [Yb(L1RRRR)(NO3)2]NO3, [Yb2(L1SSSS)2(OH)2(H2O)2](NO3)4·2MeOH·2H2O, [Yb2(L1RRRR)2(OH)2(H2O)2][Yb2(L1SSSS)2(OH)2(H2O)2](NO3)8·1.5MeOH·5H2O and [Y2(L1SSSS)2(O2)(NO3)2](NO3)2·2MeOH with enantiomerically pure or racemic ligand L1 have been determined. The structure of [Yb2(L1RRRR)2(OH)2(H2O)2][Yb2(L1SSSS)2(OH)2(H2O)2] (NO3)8·1.5MeOH·5H2O crystal confirms chiral recognition of macrocyclic units of the same chirality in solids.

Covalent organic framework mesocrystals through dynamic modulator manipulated mesoscale self-assembly of imine macrocycle precursors

Framework crystallization is an unresolved challenge in the chemistry of covalent organic frameworks (COFs) due to the poorly controlled simultaneous polymerization and crystallization processes. Here, we report the first morphogenesis of COF mesocrystals with two-dimensional hexagonal p6m symmetry through the combination of alkyl amine as a dynamic modulator and 2,4,6- triformylresorcinol imine as an asymmetrical building block. The amine modulator depresses the lateral growth of 2D sheets, and the slow kinetics combined with the asymmetrical conformation of 2,4,6-triformylresorcinol imine lead to the formation of transient imine macrocycles, which further undergo mesoscale self-assembly into nanotubular structures. The nanotubular structures tend to join together into rod-like bundles with ordered hexagonal rods, which finally grow into uniform hexagonal COF mesocrystals. The present strategy opens a nonclassical nucleation and crystal growth approach to create COFs with unexplored mesocrystal structures, which further extends the scope of crystalline framework materials and provides a new strategy for crystal morphogenesis.

Synthesis of dynamic imine macrocyclic supramolecular polymers via synchronized self-assembly based on dynamic covalent bonds and noncovalent interactions.

The preparation of dynamic imine macrocycles and supramolecular polymers is combined into a single step to form supramolecular polymers (SPs). 1,4-Diazabicyclo[2.2.2]octane (DABCO) derived quaternary ammonium salts induce aldehyde and amine building blocks to covalently form imine macrocycles. Multiple noncovalent interactions between hosts (i.e., imine macrocycle) and guests (i.e., DABCO) act as driving forces. Thus, for the first time, dynamic imine macrocyclic supramolecular polymers (DIMPs) have been achieved through the synchronized self-assembly of dynamic covalent bond formed imine macrocycles and noncovalent interactions of hosts-guests.

Mixed Macrocycles Derived from 2,6-Diformylpyridine and Opposite Enantiomers of trans-1,2-Diaminocyclopentane and trans-1,2-Diaminocyclohexane.

The condensation reaction of 2,6-diformylpyridine with an equimolar mixture of opposite enantiomers of trans-1,2-diaminocyclopentane and trans-1,2-diaminocyclohexane using a dynamic combinatorial chemistry approach has been examined. In nonmetal-templated reactions, depending on reaction conditions, mixed 2 + 1 + 1 macrocyclic imine or bigger mixed 4 + 2 + 2 imine macrocycle are formed selectively. The 2 + 1 + 1 imine used as a precursor in the templated by CdII ions produces a library of enlarged chiral mixed imines coordinated with metal cations among which the hexanuclear CdII complex of 6 + 3 + 3 imine was isolated and characterized. All macrocyclic imine compounds have been reduced to the corresponding macrocyclic amines, which have been further transformed into their hydrochlorides. Each macrocyclic compound has been obtained as two enantiomers. For imine macrocycles and for the hydrochloride derivatives of macrocyclic amines, their X-ray crystal structures have been determined. In particular, the crystals of protonated 4 + 2 + 2 macrocyclic amine, which contains two types of diastereomeric cations differing in terms of inverted twists of pyridine moieties, and hexanuclear CdII complex of 6 + 3 + 3 imine, which gives a deeper insight into the expansion reaction, have been investigated. A heterochiral self-sorting of 2 + 2 and 2 + 1 + 1 macrocyclic imines has been confirmed by a competition reaction of 2,6-diformylpyridine, racemic trans-1,2-diaminocyclopentane, and racemic trans-1,2-diaminocyclohexane and theoretical calculations.

Imine polymers containing chiral nanohoops in the backbone obtained through [2 + 2] cyclocondensation

ABSTRACTA simple method for synthesis of polymers containing shape persistent imine macrocycles as nanohoops in the main chain is studied. It is based on the cyclocondensation reaction carried out in solution and room temperature of triphenylamine‐based tetraaldehyde compounds with (R,R)‐trans‐1,2‐diaminocyclohexane. The pristine polymer P1 bearing long alkyl groups is soluble during the synthesis but becomes insoluble after precipitation due to the strong and multiple CH/π and π‐π stacking intermolecular interactions from arene–arene species and entanglement and interpenetrating of flexible alkyl groups inside of rigid macrocycle hollow. Polymer without any solubilizing groups (P2) separates during the polymerization as an insoluble material. Both polymers are amorphous and have good thermal and environmental stability. They have a low surface area because discrete nanovoids introduced by macrocycles are disconnected in the amorphous polymers and non‐accessible for gas adsorption. Polymers have inherent luminescent properties due to triphenylamine groups and chirality derived from (R,R)‐conformation of the cyclohexane skeleton. In presence of picric acid (PA), the polymer fluorescence in solid state or suspension is strongly quenched, thus the polymers can work as efficient fluorescent probes toward nitrophenolic compounds. © 2018 Wiley Periodicals, Inc. J. Polym. Sci., Part A: Polym. Chem. 2018, 56, 2565–2573

6 + 6 Macrocycles derived from 2,6-diformylpyridine and trans-1,2-diaminocyclohexane

While the non-templated reaction of racemic trans-1,2-diaminocyclohexane with 2,6-diformylpyridine leads to a mixture of 2 + 2 and 4 + 4 macrocyclic imines, the reaction of the isolated 2 + 2 macrocycle with cadmium(II) chloride results in the fusion of three smaller macrocyclic units into a large 6 + 6 macrocycle. The X-ray molecular structures of the hexanuclear cadmium complex of this macrocycle as well as the derived 6 + 6 protonated amine reveal multiply folded macrocycles that adopt container-type conformations.

Template Synthesis of an Iron(II) Complex with a New Tridentate Macrocyclic Ligand Containing an Additional Pendant Arm

The reaction of acetone with tris(2‐aminoethyl)amine (tren) in the presence of iron(II) chloride led to formation of a new tridentate macrocyclic imine ligand with a pendant amine arm, 2‐[(E)‐8,10,10‐trimethyl‐1,2,3,4,5,6,9,10‐octahydro‐1,4,7‐triazecin‐4‐yl]‐ethylamine (L). The complex [Fe(L)Cl2] could be structurally characterized. The iron(II) complex reacts with dioxygen, however in a sluggish way and no intermediates could be spectroscopically detected. Efforts to isolate the imine ligand or to reduce it to the corresponding amine so far failed. If iron(II) triflate was used instead of iron(II) chloride in the synthesis only the iron(II)‐tren complex, [Fe(tren)CH3CN](OTf)2, was obtained.

Lanthanide(III) and yttrium(III) coordination compounds of diastereomeric (2+2) macrocyclic imines derived from 2,6-diformylpyridine and trans-1,2-diaminocyclopentane

The enantiopure mononuclear coordination compounds [Ln(L1)]Cl3·nH2O (Ln = Y(III), Nd(III), Sm(III), Eu(III), Tb(III), Yb(III)) of the chiral macrocyclic (2+2) imine L1 (L1RRRR and L1SSSS), derived from (1R,2R) and (1S,2S)-1,2-diaminocyclopentane (DACP) and 2,6-diformylpyridine (DFP), have been synthesized in the templated condensation of the precursors in the presence of the appropriate metal salts. From the racemic trans-DACP and DFP in the templated condensation, a series of racemic mononuclear coordination compounds [Ln(L1rac)]Cl3·nH2O (Ln = Y(III), Nd(III), Sm(III), Eu(III), Tb(III), Yb(III)) have been obtained. In the absence of metal salt, the condensation of the achiral precursors leads to a meso type Schiff base L2, which in the presence of lanthanide(III) salts produced the mononuclear coordination compounds [Ln(L2)]Cl3·nH2O (Ln = Y(III), Nd(III), Sm(III), Eu(III), Tb(III)). The mononuclear coordination compounds with the L1 and L2 ligands have been characterised by NMR spectroscopy, mass spectrometry, elemental analyses and/or circular dichroism (CD). 1H NMR signals of CDCl3/CD3OD solutions of the Y(III), Nd(III), Sm(III) and Eu(III) coordination compounds have been assigned on the basis of their COSY and HMQC spectra, and for the remaining lanthanide coordination compounds (Tb(III) and Yb(III)) the signals were tentatively assigned on the basis of linewidths analyses. The properties and stability of the lanthanide(III) and yttrium(II) coordination compounds of the racemic macrocycle L1rac have been compared with those of the isomeric meso type macrocycle L2 in organic solvents and water. Axial ligand exchange for several coordination compounds was investigated by 1H NMR titration experiments in organic solvents. The X-ray crystal structures of the representative mononuclear coordination compounds [Nd(L1RRRR)Cl(H2O)2]Cl2·0.5MeOH·H2O, [Nd(L1rac)Cl(H2O)2]Cl2·1.6MeOH·0.2H2O, [Y(L1rac)Cl(H2O)2]Cl2·3.5H2O, [Y(L1rac)Cl(H2O)2][Y(L1rac)(H2O)3]Cl5·6.8H2O and [Nd(L2)Cl2(H2O)]Cl with the diastereomeric ligands L1 and L2 have been determined.

Total Synthesis of Scytonemide A Employing Weinreb AM Solid-Phase Resin.

The human 20S proteasome inhibitor scytonemide A (1), a macrocyclic imine originally isolated from the cyanobacterium Scytonema hofmanni, was synthesized via a biomimetic solid-phase peptide synthesis (SPPS) approach employing the Weinreb AM resin. Utilizing this approach, cyclization of the protected heptapeptide via formation of the imine bond occurred spontaneously upon cleavage from the resin in the presence of a reducing agent and subsequent aqueous workup. The final deprotection step necessary to produce the natural product was accomplished under slightly basic conditions, facilitating cleavage of the silyl ether group while leaving the macrocycle intact. Purification of the synthetic scytonemide A was accomplished via normal-phase flash column chromatography, potentially facilitating larger scale preparation of the compound necessary for future mechanistic and SAR studies. The structure of the target compound was confirmed by NMR spectroscopy, which also shed light on differences in the spectroscopic data obtained for the synthetic and natural scytonemide A samples for some of the amide and alcohol signals in the 1H NMR spectrum.