The Na-metasomatic hydrothermal uranium deposits are relatively widespread, low in grade (less than 1 % U3O8) but high in tonnage. Although it has been considered that this type of deposit was formed due to hydrothermal alteration unrelated to magmatic activity, the detailed evolution of fluids and ore-forming process are still not well understood. Through element-mass-balance calculation and geochemical mapping of regional rocks, we investigated the Jiling uranium deposit in northwestern China and evaluated the composition and source of fluids and element-transfer behavior through Na-metasomatism and uranium mineralization. The findings show that, in the early Na-metasomatism stage, the Na-, HFSE- and REE-rich late-magmatic hydrothermal fluids caused Na-metasomatism of wall rocks, enriching Na2O (>53 %) while removing K2O (<-78 %), depleting SiO2 (30 % in granite and 3 % in diorite), and massively mass-transferring Fe, Ti, P and some incompatible elements. With increased rock permeability and the formation of partial Fe2+-bearing minerals, the Na-metasomatic alteration produced reducing agents and migration channels for ore-forming fluids, as well as the creation of ∼ 15 vol% porosity in the altered granite for metallogenic space. In the late uranium mineralization stage, CO2-rich fluids extracted uranium and HREEs, converted Fe2+ to Fe3+, and subsequently precipitated uranium to form pitchblende with apatite, calcite and chlorite. Thus, the Na-metasomatic alteration caused by late-magmatic hydrothermal fluids is critical for the production of large Na-metasomatic hydrothermal uranium deposits. Our new geochemical mapping reveals that the mass-concentration changes of Na, K and Si are more credible to defining Na-metasomatic alteration, while Fe, Ti, P, ∑(Zr-Hf-Nb-Ta) and ∑LREE/∑HREE vary strikingly during the uranium mineralization process.