Hydrogen Bond Donor Moieties Research Articles

Bifunctional Onium and Potassium Iodides as Nucleophilic Catalysts for the Solvent-Free Syntheses of Carbonates, Thiocarbonates, and Oxazolidinones from Epoxides.

The catalytic potential of organo-onium iodides as nucleophilic catalysts is aptly demonstrated in the synthesis of cyclic carbonates from epoxides and carbon dioxide (CO2 ), as a representative CO2 utilization reaction. Although organo-onium iodide nucleophilic catalysts are metal-free environmentally benign catalysts, harsh reaction conditions are generally required to efficiently promote the coupling reactions of epoxides and CO2 . To solve this problem and accomplish efficient CO2 utilization reactions under mild conditions, bifunctional onium iodide nucleophilic catalysts bearing a hydrogen bond donor moiety were developed by our research group. Based on the successful bifunctional design of the onium iodide catalysts, nucleophilic catalysis using a potassium iodide (KI)-tetraethylene glycol complex was also investigated in coupling reactions of epoxides and CO2 under mild reaction conditions. These effective bifunctional onium and potassium iodide nucleophilic catalysts were applied to the solvent-free syntheses of 2-oxazolidinones and cyclic thiocarbonates from epoxides.

Redox-Active and Urea-Engineered-Entangled MOFs for High-Efficiency Water Oxidation and Elevated Temperature Advanced CO2 Separation Cum Organic-Site-Driven Mild-Condition Cycloaddition.

Development of the multifaceted metal-organic framework (MOF) with in situ engineered task-specific sites can promise proficient oxygen evolution reaction (OER) and high-temperature adsorption cum mild-condition fixation of CO2. In fact, effective assimilation of these attributes onto a single material with advance performance characteristics is practically imperative in view of renewable energy application and carbon-footprint reduction. Herein, we developed a three-fold interpenetrated robust Co(II) framework that embraces both redox-active and hydrogen-bond donor moieties inside the microporous channel. The activated MOF demonstrates notable OER catalysis in alkaline medium via quasi-reversible Co2+/Co3+ couple and unveils low overpotential with impressive 53.5 mV/dec Tafel slope that overpowers some benchmark, commercial, as well as contemporary materials. In particular, significantly increased turnover frequency (3.313 s-1 at 400 mV) and fairly low charge-transfer resistance (3.02 Ω) compared to Co3O4, NiO, and majority of redox-active MOFs together with 91% Faradaic efficiency and notable framework durability after multiple OER cycles endorse high-performance water oxidation. Pore-wall decked urea groups benefit appreciable CO2 adsorption even at elevated temperatures with considerable MOF-CO2 interactions and exhibit recurrent capture-release cycles at diverse temperatures. Interestingly, CO2 selectivity displays radical upsurge with temperature rise, affording 40% improved CO2/N2 value of 200 at 313 K, which outperforms many porous adsorbents and delineates real-time CO2 scavenging potential. The guest-free MOF effectively catalyzes solvent-free CO2 cycloaddition with broad substrate tolerance and satisfactory reusability under relatively mild condition. Opposed to the common Lewis acid-mediated reaction, two-point hydrogen-bonding activates the substrate, as supported from controlled experiments, juxtaposing the performance of an un-functionalized MOF and fluorescence modification-derived framework-epoxide interaction, providing valuable insights on unconventional cycloaddition route in the MOF.

Structure–property relationship studies of 3-acyl-substituted furans: the serendipitous identification and characterization of a new non-classical hydrogen bond donor moiety

A serendipitous identification and characterization of a new non-classical hydrogen bond donor moiety found in N-acylhydrazones containing 3-acyl-substituted furan subunit is presented.

Structure-based rational design of staurosporine-based fluorescent probe with broad-ranging kinase affinity for kinase panel application.

Selectivity profiling of compounds is important for kinase drug discovery. To this end, we aimed to develop a broad-range protein kinase assay by synthesizing a novel staurosporine-derived fluorescent probe based on staurosporine and kinase-binding related structural information. Upon structural analysis of staurosporine with kinases, a 4'-methylamine moiety of staurosporine was found to be located on the solvent side of the kinases, to which several linker units can be conjugated by either alkylation or acylation. However, such conjugation was suggested to reduce the binding affinities of the modified compound for several kinases, owing to the elimination of hydrogen bond donor moiety of NH-group from 4'-methylamine and/or steric hindrance by acyl moiety. Based on this structural information, we designed and synthesized a novel staurosporine-based probe without methyl group in order to retain the hydrogen bond donor, similar to unmodified staurosporine. The broad range of the kinase binding assay demonstrated that our novel fluorescent probe is an excellent tool for developing broad-ranging kinase binding assay.

Structure-activity study of N-((trans)-4-(2-(7-cyano-3,4-dihydroisoquinolin-2(1H)-yl)ethyl)cyclohexyl)-1H-indole-2-carboxamide (SB269652), a bitopic ligand that acts as a negative allosteric modulator of the dopamine D2 receptor.

We recently demonstrated that SB269652 (1) engages one protomer of a dopamine D2 receptor (D2R) dimer in a bitopic mode to allosterically inhibit the binding of dopamine at the other protomer. Herein, we investigate structural determinants for allostery, focusing on modifications to three moieties within 1. We find that orthosteric "head" groups with small 7-substituents were important to maintain the limited negative cooperativity of analogues of 1, and replacement of the tetrahydroisoquinoline head group with other D2R "privileged structures" generated orthosteric antagonists. Additionally, replacement of the cyclohexylene linker with polymethylene chains conferred linker length dependency in allosteric pharmacology. We validated the importance of the indolic NH as a hydrogen bond donor moiety for maintaining allostery. Replacement of the indole ring with azaindole conferred a 30-fold increase in affinity while maintaining negative cooperativity. Combined, these results provide novel SAR insight for bitopic ligands that act as negative allosteric modulators of the D2R.

Structural Characterization and Rationalization of Formation, Stability, and Transformations of Benperidol Solvates

Experimental and theoretical characterization and studies of phase transitions and stability of the solvates obtained in solvate screening of the pharmaceutical compound benperidol were performed to rationalize and understand the solvate formation, stability, and phase transitions occurring during their desolvation. The solvate screening revealed that benperidol can form 11 solvates, including two sets of isostructural solvates. The analysis of the solvate crystal structures and molecular properties indicated that benperidol solvate formation is mainly driven by the complications during packing of benperidol molecules in an energetically efficient way in the absence of solvent molecules, as well as by the compensation of an insufficient number of hydrogen bond donor moieties. Analysis of solvate structures, particularly those of isostructural solvates, revealed that both the possible interactions and the size and shape of the solvent molecules were important factors in solvate formation. Stability of the ...

ChemInform Abstract: Design, Synthesis, and Organocatalytic Activity of N‐Heterocyclic Carbenes Functionalized with Hydrogen‐Bond Donors in Enantioselective Reactions of Homoenolates.

A focused library of chiral imidazolinium salts functionalized with urea-type hydrogen-bond donor moieties has been prepared from the chiral pool. The corresponding N-heterocyclic carbenes were evaluated as organocatalysts in three enantioselective reactions involving homoenolate intermediates generated from enals. The catalysts proved competent in enantioselective cyclopentannulation and γ-lactonization reactions, a premiere for imidazoline-based NHCs. This work conveys some new ideas and knowledge on the concepts of bifunctional enantioselective organocatalysis applied to NHCs.

HF-EPR, Raman, UV/VIS light spectroscopic, and DFT studies of the ribonucleotide reductase R2 tyrosyl radical from Epstein-Barr virus.

Epstein-Barr virus (EBV) belongs to the gamma subfamily of herpes viruses, among the most common pathogenic viruses in humans worldwide. The viral ribonucleotide reductase small subunit (RNR R2) is involved in the biosynthesis of nucleotides, the DNA precursors necessary for viral replication, and is an important drug target for EBV. RNR R2 generates a stable tyrosyl radical required for enzymatic turnover. Here, the electronic and magnetic properties of the tyrosyl radical in EBV R2 have been determined by X-band and high-field/high-frequency electron paramagnetic resonance (EPR) spectroscopy recorded at cryogenic temperatures. The radical exhibits an unusually low g1-tensor component at 2.0080, indicative of a positive charge in the vicinity of the radical. Consistent with these EPR results a relatively high C-O stretching frequency associated with the phenoxyl radical (at 1508 cm−1) is observed with resonance Raman spectroscopy. In contrast to mouse R2, EBV R2 does not show a deuterium shift in the resonance Raman spectra. Thus, the presence of a water molecule as a hydrogen bond donor moiety could not be identified unequivocally. Theoretical simulations showed that a water molecule placed at a distance of 2.6 Å from the tyrosyl-oxygen does not result in a detectable deuterium shift in the calculated Raman spectra. UV/VIS light spectroscopic studies with metal chelators and tyrosyl radical scavengers are consistent with a more accessible dimetal binding/radical site and a lower affinity for Fe2+ in EBV R2 than in Escherichia coli R2. Comparison with previous studies of RNR R2s from mouse, bacteria, and herpes viruses, demonstrates that finely tuned electronic properties of the radical exist within the same RNR R2 Ia class.

Norharmane: Old yet highly selective dual channel ratiometric fluoride and hydrogen sulfate ion sensor

Norharmane provides a simple unexplored class of anion receptor, that allows for the ratiometric selective detection of F(-) and HSO(4)(-) ions. The presence of a strong base can easily form hydrogen bonds with the acidic hydrogen bond donor moiety and the relatively strong acid can easily protonate the basic hydrogen bond acceptor moiety, which can modulate the optical response and can detect the anions efficiently with high selectivity. In view of that, it is promising to conceive the use of these systems in various sensing applications as well as in other situations, such as anion transport and purification, where the availability of cheap and easy-to-make anion receptors, would be advantageous.

Synthesis of indolo[3,2-b]carbazole-based new colorimetric receptor for anions: A unique color change for fluoride ions.

A novel indolocarbazole-based chemosensor 1 containing hydrogen bond donor moieties has been established as a selective colorimetric and fluorometric sensor for F− in CH3CN/H2O (4:1 v/v). Upon the addition of a series of tetrabutylammonium salts to receptor 1 in aqueous CH3CN, only when the counter ion was F− was a significant color change (from light violet to dark orange) observed.

Supramolecular chemistry of [{M(CO)3(µ3-OH)}4](M = Mn or Re): a modular approach to crystal engineering of superdiamondoid networks

The compounds [{M(CO)3(µ3-OH)}4](M = Mn 1 or Re 2), which are cubane-like molecules possessing Td symmetry with four strong hydrogen-bond donor moieties rigidly directed towards the vertices of a tetrahedron, cocrystallized with 2 equivalents of a series of linear difunctional hydrogen-bond acceptor molecules or ‘spacers’ to afford 14 three-dimensional superdiamondoid networks with varying, but predictable, extents of interpenetration according to X-ray crystallography. The extent can be rationalized on the basis of the volume and length of the spacer molecule: benzene, toluene, p-xylene, p-fluorotoluene, naphthalene, 1-methylnaphthalene (all viaπ-hydrogen bonds), N,N,N′,N′-tetramethylethane-1,2-diamine (tmen), 1,2-bis(diphenylphosphoryl)ethane (dppoe) and 1,4-diamino-benzene (dab) afford two-fold networks; 1,2-diaminoethane (en) and 2-chloropyrazine (cpyz) afford three-fold networks; 4,4′-bipyridyl (bipy) and 4,4′-bipiperidine (bipip) afford four-fold networks. The adducts 1·2dppoe, 2·2dab, 1·2bipy, 2·2bipy and 1·2bipip crystallize with enough space in the crystal lattice to enclathrate one, four, two, two and two acetonitrile molecules per molecule of cubane, respectively. All fourteen networks crystallize in space groups that reflect at least some of the symmetry inherently present in 1 and 2.