Transition hydraulic jumps, also known as low-Froude number jumps, have been less studied compared to high Froude number jumps, despite their significance in high-discharge and low-head dams. A three-dimensional (3D) Lattice Boltzmann method simulation was conducted to investigate submerged transition hydraulic jumps in both normal and expanded stilling basins, focusing on turbulent flow characteristics such as velocity fields, vorticity features, pressure fluctuations, and coherent structures. In expanded basins, two symmetric separated rollers were observed, with the rollers detaching from the submerged jump as the width of basin increased. The length of submerged roller in normal basins is observed as Lr/Ht = 6.19, while it is decreased to Lr/Ht = 4 in expanded basins because of the occurrence of roller lateral diffusion toward sidewalls. The transition of vortex structures from y- to z-vortical was analyzed, and three-dimensional shear layers are captured using the iso-surface of vorticity magnitude ω = 6.5. To further describe the internal structure of turbulence within the transition hydraulic jump, the coherent flow structures are qualitatively examined using the Ω criterion that is the third generation of vortex identification technique. Pressure fluctuations in low-Froude number stilling basins, described using root mean square (RMS), are first presented. High patches of RMS are found in the flow fields and at the bottom of basins, and it is qualitatively noted that shear effects make great contributions to the pressure fluctuations. Distribution of bottom pressure fluctuation RMS in different types of basin was also analyzed. The peak RMS value occurs at the ogee region of the weir, specifically at x/L = −0.2, and it is mainly affected by the width of expansion. Bottom pressure fluctuation RMS decreases in the following order: Normal, 5 m gradual expansion, 10 m gradual expansion, 5 m sudden expansion, and 10 m sudden expansion, due to the lateral diffusion of rollers toward sidewalls. This research introduces an innovative numerical simulation approach to studying pressure fluctuations, offering valuable insights for hydraulic engineering applications.