This study presents a comprehensive analysis of a sediment record from the Western Alboran Basin (core GP04PC), utilizing palynological and geochemical tools to investigate marine productivity responses to orbital and suborbital climate variability over the past 13,000 years. High productivity during the Younger Dryas humid phase (∼12.4–11.7 ka) and the Holocene humidity optimum (∼10.5–8.5 ka) was driven by increased local river discharges resulting from rapid mountain glaciers melting and enhanced regional precipitation. During the late Holocene, frequent flood events linked to negative North Atlantic Oscillation (NAO) incursions potentially led to multicentennial-scale productivity increases. The findings indicate that periods characterized by wet regional conditions and increased river run-off, influenced by orbital (e.g., insolation cycles) and suborbital factors (e.g., NAO and Atlantic Meridional Overturning Circulation changes), consistently enhanced marine productivity in the Western Alboran Basin. The study also reveals that the current high productivity and carbon export in the Western Alboran Basin are maintained by active upwelling and downwelling systems driven by a persistent positive NAO phase following the southward migration of the Intertropical Convergence Zone (ITCZ) that occurred around 6.5 ka. Furthermore, geochemical proxies support a strong detrital influence on trace metal concentrations, including barium (Ba), in deep Western Alboran sediments during the Holocene. This limits the use of Ba/Al ratios for accurately reconstructing productivity changes and highlights the importance of dinocyst analysis as a complementary tool for robust marine productivity reconstructions in this region. These observations provide valuable paleoperspectives on marine ecosystem responses to climate variability, contributing to the development of robust long-term productivity models essential for adapting to ongoing environmental changes in the region, and demonstrating the strong influence of North Atlantic climate and ocean dynamics on centennial-scale productivity oscillations in this region.