Higher Plants Research Articles

Geochemical Characterizations of Crude Oils in Pendopo High and Limau Graben, South Sumatra Basin

There are several oil fields in Pendopo High and Limau Graben, South Palembang Subbasin, South Sumatra Basin. Crude oils from the Pendopo High and Limau Graben have been analyzed using geochemical methods. Some or all of the following analyses were completed on twenty-four oils. Two analysis methods, namely the δ13C isotopic and biomarker compositions have been used to classify the oil types. Most of the oils are isotopically more depleted in δ13C sat (> -28‰) relative to the other four oil sample counterpart of the Pendopo High. All oil samples from The Pendopo High have Pr/Ph values < 4 and those from the Limau Graben > 4. In addition, biomarker ratio for hopanes/steranes from the Limau Graben shows small values compared with the Pendopo High. Geochemical cross plots of probabilities can also be used to distinguish oils derived from different source inputs. In the Limau Graben, tricyclic terpane data shows terrestrial patterns, while the Pendopo High shows deltaic patterns. The Limau Graben is derived from humic kerogen, while the Pendopo High is more towards mixed kerogen (humic and sapropelic kerogen). The depositional condition in the Limau Graben is anoxic to suboxic to oxic and mostly oxic condition, predominated by higher plants. While Pendopo High condition is anoxic to suboxic, predominated by algae. Oil in the Pendopo High is interpreted to be deltaic oil, whereas oil in the Limau Graben is a typical fluvial.

Springtime spatio-temporal distribution of bird diversity in urban parks based on acoustic indices

Human-dominated urban ecosystems have encroached on native habitats, positioning urban parks as crucial sanctuaries that support bird diversity conservation. Bird communities tend to act as significant indicators of habitat quality. Birds play a key role in generating soundscapes in urban environments, where a healthy acoustic environment is essential not only for human well-being but also serves as a core focus for environmental monitoring and landscape enhancement. Previous studies have pointed out that acoustic indices have great advantages and strong feasibility for long-term environmental monitoring. However, few studies on the comparative analysis of bird diversity across urban parks subject to varying degrees of urbanization have been published in this field. In this study we recorded the springtime soundscape across 8 urban parks in Nanjing (China) from March to April 2023 for 10 hours each day. Six acoustic indices of Acoustic Complexity Index, Acoustic Diversity Index, Normalized Difference Soundscape Index, Bioacoustic Index, Acoustic Entropy Index and Power Spectral Density were used to quantify the monitoring results. To investigate the influence of vegetation habitats on bird activity, we utilized K-means clustering analysis to categorize the parks based on their developmental gradient, while Principal Component Analysis (PCA) was employed to simplify the dimensions of 12 vegetation factors. The results revealed that the distribution of birds in urban parks is a complex interplay of variables including the gradient of urban development, the functions of park plots, and the characteristics of vegetation habitats, among others. Day-to-day, human and bird activities show similarities, yet birds' responses to urban environments vary by location. The daily movement of visitors exerts a discernible influence on park birds, even those adapted to urban life. In instances of heightened human activity, birds demonstrate a proclivity for seeking refuge in less disturbed areas, and their activity space tends to be concentrated on higher plants. Vegetation communities in areas of high human disturbance are found to provide substantial support to bird habitats. Specifically, vegetation communities featuring tall trees or ground cover that form buffer zones have a significant positive effect on weakening the impact of human activities on bird communities. In terms of monitoring bird diversity with acoustic indices, Bioacoustic Index and Acoustic Diversity Index show more consistent performance, rendering them more reliable than other acoustic indices.

Title: Bona Fide Plant Steroid Receptors Are Innovated in Seed Plants and Angiosperms through Successive Whole Genome Duplication Events.

Whole genome duplication (WGD) events are widespread in plants and animals, thus their long-term evolutionary contribution has long been speculated, yet a specific contribution is difficult to verify. Here, we show that ɛ-WGD and ζ-WGD contribute to the origin and evolution of bona fide brassinosteroid (BR) signaling through the innovation of active BR biosynthetic enzymes and active BR receptors from their respective ancestors. We found that BR receptors BRI1 (BR Insensitive 1) and BRL1/3 (BRI1-likes 1/3) derived by ɛ-WGD and ζ-WGD, which occurred in the common ancestor of angiosperms and seed plants, respectively, while orphan BR receptor BRL2 first appeared in stomatophytes. Additionally, CYP85A enzymes synthesizing the bioactive BRs derived from a common ancestor of seed plants while its sister enzymes CYP90 synthesizing BR precursors presented in all land plants, implying possible ligand-receptor coevolution. Consistently, the island domains (IDs) responsible for BR perception in BR receptors were most divergent among different receptor branches, supporting ligand-driven evolution. As a result, BRI1 was the most diversified BR receptor in angiosperms. Importantly, relative to the BR biosynthetic DET2 gene presented in all land plants, BRL2, BRL1/3 and BRI1 had high expression in vascular plants ferns, gymnosperms and angiosperms, respectively. Notably, BRI1 is the most diversified BR receptor with the most abundant expression in angiosperms, suggesting potential positive selection. Therefore, WGDs initiate a neofunctionalization process diverged by ligand-perception and transcriptional expression, which might optimize both BR biosynthetic enzymes and BR receptors, likely contributing to the evolution of land plants, especially seed plants and angiosperms.

THE EFFICACY OF AMELIORANTS FOR REMEDIATION OF SOILS CONTAMINATED WITH HEAVY METALS, IN A LAB EXPERIMENT

The effectiveness of remediators in detoxification of soils contaminated with heavy metals was studied in a lab experiment. The objects of the study were the soils of the southern tundra, functioning under conditions of anthropogenic impact: Haplic Gleysols (Gelic) and Histic Fluvisols (Oxyaquic). The chemical ability of remediants to bind metals (Ni and Cu), transferring them to a sedentary state in comparison with the reference variants (without any addition of remediants), was evaluated. In experiments, remediants were used in three doses (D1, D2, D3): shungite; diatomite, glauconite and bentonite. To assess the immobilization of Ni and Cu in soils, acid-soluble (CR) forms (extraction of 1 n. HNO3), mobile forms (ammonium acetate buffer solution with pH 4.8), water-soluble forms of Ni and Cu (1:20 aqueous extract) were determined by inductively coupled plasma mass spectrometry. The effectiveness of soil detoxification during the application of remediants was evaluated by the phytotoxic effect in an express phytoassay with standardized tests (Brassica rapa CrGC and Avena sativa) represented by higher plants. A decrease in the proportion of mobile forms of Ni and Cu by 50% or more in Haplic Gleysols (Gelic) was revealed with the addition of any dose of ameliorants. The greatest effect of reducing mobility was exerted by shungite and diatomite at a dose of D1 - up to 15% Ni and Cu for Histic Fluvisols (Oxyaquic) soil. The use of the selected remediants in the indicated amounts did not reveal a phytotoxic effect on the tests in the experiment.

FEATURES OF SOIL-VEGETATION COVER OF REVEGETATED OIL-POLLUTANTED AREAS OF OLIGOTROPHIC BOGS IN THE MIDDLE OF REGION RECLAIMED BY THE CUTTING METHOD

The article provides data on a comparative analysis of the features of vegetation restoration in areas of oligotrophic bogs with a high degree of oil product pollution, located on the territory of an oil field in the Middle Ob region, reclaimed according to standard schemes, widely used in the 2000s, and by cutting off oil-contaminated soil. The total projective vegetation cover (TPVC) of all reclaimed areas mostly reaches standard values (above 30%). The TPVC in areas without cutting is slightly higher than in areas with cutting due to the difference in recovery time in favor of the former. At the same time, the average number of all recorded species in areas with cutting is slightly higher, and they include some oligotrophic vascular plants (heather shrubs, Drosera rotundifolia, Eriophorum vaginatum), which spread much less frequently in areas without cutting. The projective cover of the herb-shrub layer is higher in areas without cutting. The content of oil products in the surface layer of 0-20 cm in areas with cutting is generally lower compared to areas reclaimed by traditional methods. However, even high concentrations (more than 250 g∙kg-1) do not have a significant negative effect on the total projective cover of the grass/herb-shrub layer, while its minimum values are primarily associated with a lack of moisture on high microrelief elements. Similarly, high concentrations of hydrocarbons do not serve as an obstacle to the development of moss cover dominated by sphagnum mosses in areas of cut-off hollows. At the same time, polytrichous and brown mosses were much more sensitive to oil pollution in the form of bitumen crust, and thus avoided areas without cutting.

Evaluation of the Ecological Environment of the Fuhe River Based on the Diversity of Fish

This article takes the Fuhe River, which has water flowing into Baiyangdian all year round, as the research object. Through actual investigation and measurement of planktonic flora and fauna, benthic organisms, fish, and large vascular plants in the river, and based on fish diversity, the comprehensive evaluation index method is used to scientifically evaluate the ecological environment quality of the Fuhe River. The results showed that a total of 28 species of phytoplankton, 30 species of zooplankton, 11 species of benthic animals, 8 species of submerged plants, and 11 species of fish were detected in the survey area; From a diversity perspective, the diversity of the upstream and downstream river sections is higher than that of the downstream. Overall, the ecological environment quality of the Fuhe River in Baoding City ranges from medium to good, with good water quality in the upstream section and moderate water quality in the middle and downstream sections. This study provides a case study for the scientific evaluation of the ecological environment quality of the upper reaches of Baiyangdian.

Impact of vegetation composition and seasonality on sensitivity of modelled CO2 exchange in temperate raised bogs

Encroachment of vascular plants (VP) in temperate raised bogs, as a consequence of altered hydrological conditions and nutrient input, is widely observed. Effects of such vegetation shift on water and carbon cycles are, however, largely unknown and identification of responsible plant physiological traits is challenging. Process-based modelling offers the opportunity of gaining insights into ecosystem functioning beyond observations, and to infer decisive trait shifts of plant functional groups. We adapted the Soil–Vegetation–Atmosphere Transfer model pyAPES to a temperate raised bog site by calibration against measured peat temperature, water table and surface CO2 fluxes. We identified the most important traits determining CO2 fluxes by conducting Morris sensitivity analysis (MSA) under changing conditions throughout the year and simulated VP encroachment. We further investigated transferability of results to other sites by extending MSA to parameter ranges derived from literature review. We found highly variable intra-annual plant traits importance determining ecosystem CO2 fluxes, but only a partial shift of importance of photosynthetic processes from moss to VP during encroachment. Ecosystem respiration was dominated by peat respiration. Overall, carboxylation rate, base respiration rate and temperature sensitivity (Q10) were most important for determining bog CO2 balance and parameter ranking was robust even under the extended MSA.

The Relationship of Terrestrial Fern Species (Pteridophyta) at Salodik Waterfall Central Sulawesi Based on Morphological Characteristics

Pteridophyta ferns are a group of vascular plants that have a very long evolutionary history. This study aims to describe the relationship of terrestrial fern plant species (Pteridophyta) at Salodik Waterfall Central Sulawesi based on morphological characteristics. The method used was exploration method with the sampling technique being free collection. The data were processed using Microsoft Excel 2013 and then subjected to cluster analysis using the UPGMA (Unweighted Pair-Group Method with Arithmetic Average) method in the PAST 4.03 software (Paleontological Statistics). The research results obtained a total of 13 terrestrial fern plant species, namely Asplenium nidus, Diplazium esculentum, Davallia denticulata, Lindsaea scandens var. terrestris, Nephrolepis biserrata, Angiopteris evecta, Phymatosorus longissima, Pteris biaurita, Pteris fauriei, Selaginella doederleinii, Chingia clavipilosa, Macrothelypteris torresiana and Sphaerostephanos heterocarpus. The dendrogram of kinship between 13 species of terrestrial ferns is formed in 2 main clusters with 4 relationships categories, namely very near, near, not near, and not very near. The first category of relationship is very near with the highest Similarity Index (IS) value, namely between Macrothelypteris torresiana with Davalia denticulata (IS=86.5) and Lindsaea scandens with Pteris faurei (IS=75.2). The second category of near relationship is between Pteris biaurita with node 3 (IS=68.2), Selaginella doederleinii with node 4 (IS=64), and Diplazium esculentum with Chingia clavipilosa (IS=55.6). The third category of not near relationship is between Nephrolepis biserrata with Phymatosorus longissima (IS=27.3). The fourth category of not very near relationship with the lowest Similarity Index (IS) value is between Angiopteris evecta with Sphaerostephanos heterocarpus (IS=22.8) and Asplenium nidus with sub division Ia (IS=21.2).

Nanocrystal cellulose from diverse biological sources: Application and innovations

Cellulose is the most abundant renewable polymer on Earth which is extensively distributed in diverse ecosystems. It is present in higher plants, marine organisms, and also produced through microbial processes in organisms like algae, fungi, and bacteria. From an industrial perspective, the semicrystalline nature of cellulose present in different plant and microbial sources enables the fabrication of various types of nanocellulose, such as nanofibre and nanocrystals, through mechanical disintegration and chemical methods, respectively. Nanocellulose distinguishes itself as a sustainable, nonharmful, and biodegradable polymer. It will enable sustainable development for responsible consumption and production. Possessing a range of excellent properties, it can be seamlessly integrated into various materials. Research on nanocellulose is gaining momentum in response to current issues related to fossil fuels, including concerns about CO2 emissions, plastic pollution, and the need for renewable energy sources. This review addresses nanocrystals production method from cellulose found in agricultural, microbial sources, and its applications in fields such as materials science, electronics, medicine, and environmental science.

Computer vision models enable mixed linear modeling to predict arbuscular mycorrhizal fungal colonization using fungal morphology

The presence of Arbuscular Mycorrhizal Fungi (AMF) in vascular land plant roots is one of the most ancient of symbioses supporting nitrogen and phosphorus exchange for photosynthetically derived carbon. Here we provide a multi-scale modeling approach to predict AMF colonization of a worldwide crop from a Recombinant Inbred Line (RIL) population derived from Sorghum bicolor and S. propinquum. The high-throughput phenotyping methods of fungal structures here rely on a Mask Region-based Convolutional Neural Network (Mask R-CNN) in computer vision for pixel-wise fungal structure segmentations and mixed linear models to explore the relations of AMF colonization, root niche, and fungal structure allocation. Models proposed capture over 95% of the variation in AMF colonization as a function of root niche and relative abundance of fungal structures in each plant. Arbuscule allocation is a significant predictor of AMF colonization among sibling plants. Arbuscules and extraradical hyphae implicated in nutrient exchange predict highest AMF colonization in the top root section. Our work demonstrates that deep learning can be used by the community for the high-throughput phenotyping of AMF in plant roots. Mixed linear modeling provides a framework for testing hypotheses about AMF colonization phenotypes as a function of root niche and fungal structure allocations.

Putative rhamnogalacturonan-II glycosyltransferase identified through callus gene editing bypasses embryo lethality.

Rhamnogalacturonan II (RG-II) is a structurally complex and conserved domain of the pectin present in the primary cell walls of vascular plants. Borate crosslinking of RG-II is required for plants to grow and develop normally. Mutations that alter RG-II structure also affect crosslinking and are lethal or severely impair growth. Thus, few genes involved in RG-II synthesis have been identified. Here we developed a method to generate viable loss-of-function Arabidopsis (Arabidopsis thaliana) mutants in callus tissue via CRISPR/Cas9-mediated gene editing. We combined this with a candidate gene approach to characterize the male gametophyte defective 2 (MPG2) gene that encodes a putative family GT29 glycosyltransferase. Plants homozygous for this mutation do not survive. We showed that in the callus mutant cell walls, RG-II does not crosslink normally because it lacks 3-deoxy-D-manno-octulosonic acid (Kdo) and thus cannot form the α-L-Rhap-(1→5)-α-D-kdop-(1→ sidechain. We suggest that MGP2 encodes an inverting RG-II CMP-β-Kdo transferase (RCKT1). Our discovery provides further insight into the role of sidechains in RG-II dimerization. Our method also provides a viable strategy for further identifying proteins involved in the biosynthesis of RG-II.

Trends in botanical exploration in Nigeria forecast over 1000 yet undescribed vascular plant species.

Taxonomists are primary actors of biodiversity assessment. At the same time, there is awareness by the taxonomic community at large that the field is going through a crisis, sometimes referred to as the 'taxonomic impediment'. Coupled with the ongoing biodiversity crisis, or 6th mass extinction, this biodiversity impedance puts at risk the target set in the Convention on Biological Diversity's (CBD) Global Biodiversity Framework vision 2050, which calls for urgent action to '… put biodiversity on a path to recovery by 2030 for the benefit of planet and people'. This risk is particularly pronounced in tropical African countries where taxonomic studies are done on an ad hoc basis. In this study, our aim is to investigate the historical trends in botanical exploration of vascular plants in Nigeria and forecast the near-term (50-year) description of presently unknown species, which we use to discuss scenarios of taxonomic effort that may be necessary for a comprehensive biodiversity assessment in the country. The study is based on a dataset from the World Checklist of Vascular Plants, containing all vascular plant species reported to occur in Nigeria. We fit nested Bayesian time series regressions to estimate the long-term trend in the rate of description of vascular plant species in Nigeria. From these models, we use an ensemble forecast to estimate the number of species descriptions by the year 2070, and then evaluate the description rates per taxonomist required to meet this estimate under different totals of active taxonomists. We find a striking difference in species description between Nigerian botanists and their foreign counterparts, with the former contributing relatively small numbers. Additionally, only a fraction of the authors involved in describing Nigeria's vascular plants are of indigenous origin. Our study reveals that the number of new species described annually exhibits a long-term increasing trend, with an average of 19.5 species described per year. However, after taking into account year-to-year variability and the number of taxonomists active in a given year, the long-term trend in species descriptions credibly declines over time. While the number of authors involved in describing species has generally increased over time, it has remained stable since the 1950s. Predictions for the number of new species descriptions by 2070 vary by model, with an ensemble prediction estimating 1140 species descriptions, but ranging from 1004 to 2239 between individual models. The study estimates that current levels of taxonomic activity should lead to a 20 % increase in known species of vascular plants in Nigeria over the next 50 years, which is still probably an underestimate of the true, unknown species richness. Urgent action is needed to address the taxonomic impediment so that local taxonomic studies in tropical African countries can achieve the CBD's Global Biodiversity Framework vision 2050. Here, we outline some key pathways to achieving this goal.

GLR-dependent calcium and electrical signals are not coupled to systemic, oxylipin-based wound-induced gene expression in Marchantia polymorpha.

In angiosperms, wound-derived signals travel through the vasculature to systemically activate defence responses throughout the plant. In Arabidopsis thaliana, activity of vasculature-specific Clade 3 glutamate receptor-like (GLR) channels is required for the transmission of electrical signals and cytosolic Ca2+ ([Ca2+]cyt) waves from wounded leaves to distal tissues, triggering activation of oxylipin-dependent defences. Whether nonvascular plants mount systemic responses upon wounding remains unknown. To explore the evolution of systemic defence responses, we investigated electrical and calcium signalling in the nonvascular plant Marchantia polymorpha. We found that electrical signals and [Ca2+]cyt waves are generated in response to mechanical wounding and propagated to nondamaged distal tissues in M. polymorpha. Functional analysis of MpGLR, the only GLR encoded in the genome of M. polymorpha, indicates that its activity is necessary for the systemic transmission of wound-induced electrical signals and [Ca2+]cyt waves, similar to vascular plants. However, spread of these signals is neither coupled to systemic accumulation of oxylipins nor to a transcriptional defence response in the distal tissues of wounded M. polymorpha plants. Our results suggest that lack of vasculature prevents translocation of additional signalling factors that, together with electrical signals and [Ca2+]cyt waves, contribute to systemic activation of defences in tracheophytes.

Dry grasslands and thorn-cushion communities of Armenia: a first syntaxonomic classification

Aim: To provide the first syntaxonomic, plot-based classification of the dry grasslands and thorn-cushion communities in Armenia. Study area: Armenia. Methods: We sampled 111 vegetation plots (10 m2) and recorded environmental and structural parameters. We collected additional 487 relevés from surrounding countries for a broad-scale comparison. We used modified TWINSPAN to derive a syntaxonomic classification system, whose units were then compared among each other regarding species composition, structure, site conditions and distribution. Results: The classification of Armenian vegetation plots resulted in a 12-cluster solution. Unsupervised classification of the broad-scale dataset yielded five main groups, which were used for the high-level syntaxonomic assignments of the Armenian data. We assigned about half of the plots of the Armenian dataset to the Festuco-Brometea, while the remaining represented a potential new class, preliminarily called “Ziziphora tenuior-Stipa arabica grasslands”. Most of the syntaxa below class level are new to science, therefore we provide formal descriptions of three orders (Plantagini atratae-Bromopsietalia variegatae, Onobrychido transcaucasicae-Stipetalia pulcherrimae, Cousinio brachypterae-Stipetalia arabicae), four alliances (Acantholimono caryophyllacei-Stipion holosericeae, Artemision fragrantis, Onobrychido michauxii-Stipion capillatae, Onobrychido transcaucasicae-Stipion pulcherrimae) and six associations. We found significant differences in the topographic, climatic and soil characteristics, and structural parameters, species life forms and distribution range types between the grassland types at different syntaxonomic levels. The mean species richness was 47.3 (vascular plants: 46.8, bryophytes: 0.4, lichens: 0.1). Conclusions: We found remarkable differences of the Armenian dry grasslands from the previously known units and described most of the higher syntaxa and all the associations as new to science. Our study provides arguments for a potential new class of Ziziphora tenuior-Stipa arabica grasslands separate both from the Euro-Siberian Festuco-Brometea and the Anatolian Astragalo-Brometea. Finally, we found plot scale richness of vascular plants clearly above the Palaearctic average of dry grasslands and that of non-vascular plants clearly below, which calls for further biodiversity analyses. Taxonomic reference: Euro+Med (2023) for vascular plants, Hodgetts et al. (2020) for bryophytes, Nimis et al. (2018) for lichens except for Xanthoparmelia camtschadalis (Ach.) Hale. Abbreviations: EDGG = Eurasian Dry Grassland Group; DCA = detrended correspondence analysis; ICPN = International Code of Phytosociological Nomenclature (Theurillat et al. 2021); TWINSPAN = two-way indicator species analysis.

Overexpression of Calcineurin B-like Interacting Protein Kinase 31 Promotes Lodging and Sheath Blight Resistance in Rice.

A breakthrough "Green Revolution" in rice enhanced lodging resistance by using gibberellin-deficient semi-dwarf varieties. However, the gibberellic acid (GA) signaling regulation on rice disease resistance remains unclear. The resistance test showed that a positive GA signaling regulator DWARF1 mutant d1 was more susceptible while a negative GA signaling regulator Slender rice 1 (SLR1) mutant was less susceptible to sheath blight (ShB), one of the major rice diseases, suggesting that GA signaling positively regulates ShB resistance. To isolate the regulator, which simultaneously regulates rice lodging and ShB resistance, SLR1 interactors were isolated. Yeast two-hybrid (Y2H), bimolecular fluorescence complementation (BiFC), and Co-IP assay results indicate that SLR1 interacts with Calcineurin B-like-interacting protein kinase 31 (CIPK31). cipk31 mutants exhibited normal plant height, but CIPK31 OXs showed semi-dwarfism. In addition, the SLR1 level was much higher in CIPK31 OXs than in the wild-type, suggesting that CIPK31 OX might accumulate SLR1 to inhibit GA signaling and thus regulate its semi-dwarfism. Recently, we demonstrated that CIPK31 interacts and inhibits Catalase C (CatC) to accumulate ROS, which promotes rice disease resistance. Interestingly, CIPK31 interacts with Vascular Plant One Zinc Finger 2 (VOZ2) in the nucleus, and expression of CIPK31 accumulated VOZ2. Inoculation of Rhizoctonia solani AG1-IA revealed that the voz2 mutant was more susceptible to ShB. Thus, these data prove that CIPK31 promotes lodging and ShB resistance by regulating GA signaling and VOZ2 in rice. This study provides a valuable reference for rice ShB-resistant breeding.

Bioclimatic and remote sensing factors are better key indicators than local topography and soil: Vegetation composition variability in forests of Pakistan's Spin Ghar Mountain range

The composition, structure and distribution of vegetation are influenced by diverse environmental factors. Such research inquiries provide the initial data for future conservation and management efforts. The study area of North Waziristan district, Khyber Pakhtunkhwa, Pakistan comprises diverse forests of the Spin Ghar Mountain Range (at the border areas of Pakistan and Afghanistan), and a highly remote, mountainous, and unexplored region. There was little information on the complex relationships that existed between the study area's ambient environment and vegetation. This study hypothesized that the varying environmental complexity in the study area and vegetation variety may be significantly correlated, and the ranking of leading influencing factors might enhance our ecological understanding. A total of 61 study sites comprising 183 transects (50 m each) were randomly selected to record the vegetation-environment data from January-2018 to December-2020 (3 years). Monte Carlo permutation testing, hierarchical clustering of study samples, indicator species analysis, and ordination were applied to assess the sampling data. The results indicated that there were a total of 391 vascular plant species which were further classified into seven significantly different (p < 0.05) plant assemblages, each comprising of a distinct species makeup. A variety of different environmental variables (topographic (06), bioclimatic (19), edaphic (09), remote sensing, and anthropogenic predictors (16)) were considered. Simple term effects testing results depicted the significant (p(adj) < 0.05) role of 39 variables initially, whereas, conditional term effects testing (with variance inflation factor (VIF) threshold value of < 10, and forward selecting variables that provided the most unique information) results highlighted the prominent role of eight (08) contributors. The results of the latter analysis ranked the mean temperature of the warmest quarter (Bio10) as the most influencing factor, followed by Normalized Difference Vegetation Index (NDVI), longitude, continuous heat insulation load index (CHILI), precipitation of the warmest quarter (Bio18), global human modification of the terrestrial systems (gHM), organic carbon density (OCD), and annual precipitation (Bio12). This study concluded that the vegetation variability in the study area was significantly correlated with the prevailing environment, and considered bioclimatic and remote sensing factors were better key indicators for any vegetation distribution when the study was conducted on a large spatial scale. Based on these results, the anticipated future variations in climate, particularly global warming, lengthy drought spells, and population explosion might remarkably lead to decline in local plant species richness and distribution. For the study area to guard its priceless biodiversity for future generations, careful and prompt conservation and management planning are required.

Species habitat suitability increased during COVID-19 lockdowns

COVID-19 lockdowns had strong positive and negative effects on the environment and biodiversity. The most evident effects were the occurrence of wildlife in the middle of urban settlements, the reduction of noise, and the improvement in air quality. However, other effects on species are less well known. Our main question is: did species habitat suitability increase during lockdowns? Here, we analysed trends in species habitat suitability over time by modelling the species distributions with a time series of environmental variables obtained from satellite remote sensing. We modelled the habitat suitability of 381 species of vascular plants, amphibians, reptiles, birds, and mammals, before, during, and after the lockdowns in the Iberian Peninsula (Portugal and Spain), from July 2017 to August 2022 with the Maxent presence-background algorithm and five MODIS variables (Albedo, Evapotranspiration, LST, NDVI, and Surface reflectance) with a periodicity of 8 days, and analysed their trends with the Mann-Kendall test. We compared our results with air quality data (PM10, CO, and NO2) from ground stations and Sentinel 5 P and with mobility data from Google mobility reports. Habitat suitability increased during both lockdowns when considering all species together. The peak in species' habitat suitability trends during the first lockdown was coincident with air quality and mobility trends: air pollution decreased when people stayed at home. Reduction in human mobility during COVID-19 lockdowns revealed positive effects on species’ habitat quality, highlighting the importance of reducing human activities as the only solution for nature conservation.

Factors affecting the foliar endophyte community in the invasive weed, Impatiens glandulifera

All vascular plants contain communities of endophyte fungi within their foliar tissues. These fungi can act as plant bodyguards and disrupt the efficacy of weed biological control agents, yet studies of invasive plant biology hardly ever consider the background endophyte communities. Here, we investigated the factors that affect the structure of cultivable endophyte communities in the highly invasive weed Impatiens glandulifera. We found that community composition varies according to location, but that seasonal accumulation patterns of endophytes are similar between sites. Biotic factors influencing endophytes include arbuscular mycorrhizal fungi, insect herbivores and plant pathogens. Endophyte species richness per plant was consistently low compared with other herbaceous plants and communities appear to be a random sub-set of the available species pool, with the plant acting as a strong filter of species. This information should enable community structure to be modelled and manipulated, making biological control of this weed more effective.

ACRE, a class of AP2/ERF transcription factors, activates the expression of sweet potato ß-amylase and sporamin genes through the sugar-responsible element CMSRE-1

Sugars, synthesized by photosynthesis in source organs, are loaded and utilized as an energy source and carbon skeleton in sink organs, and also known to be important signal molecules regulating gene expression in higher plants. The expression of genes coding for sporamin and β-amylase, the two most abundant proteins in storage roots of sweet potato, is coordinately induced by sugars. We previously reported on the identification of the carbohydrate metabolic signal-responsible element-1 (CMSRE-1) essential for the sugar-responsible expression of two genes. However, transcription factors that bind to this sequence have not been identified. In this study, we performed yeast one-hybrid screening using the sugar-responsible minimal promoter region of the ß-amylase gene as bait and a library composed only transcription factor cDNAs of Arabidopsis. Two clones, named Activator protein binding to CMSRE-1 (ACRE), encoding AP2/ERF transcription factors were isolated. ACRE showed transactivation activity of the sugar-responsible minimal promoter in a CMSRE-1-dependent manner in Arabidopsis protoplasts. Electric mobility shift assay (EMSA) using recombinant proteins and transient co-expression assay in Arabidopsis protoplasts revealed that ACRE could actually act to the CMSRE-1. Among the DEHYDRATION -RESPONSIVE ELEMENT BINDING FACTOR (DREB) subfamily, almost all homologs including ACRE, could act on the DRE, while only three ACREs could act to the CMSRE-1. Moreover, ACRE-homologs of Japanese morning glory also have the same property of DNA-binding preference and transactivation activity through the CMSRE-1. These findings suggested that ACRE plays an important role in the mechanism regulating the sugar-responsible gene expression through the CMSRE-1 conserved across plant species.

Genomic evidence for the widespread presence of GH45 cellulases among soil invertebrates.

Lignocellulose is a major component of vascular plant biomass. Its decomposition is crucial for the terrestrial carbon cycle. Microorganisms are considered primary decomposers, but evidence increases that some invertebrates may also decompose lignocellulose. We investigated the taxonomic distribution and evolutionary origins of GH45 hydrolases, important enzymes for the decomposition of cellulose and hemicellulose, in a collection of soil invertebrate genomes. We found that these genes are common in springtails and oribatid mites. Phylogenetic analysis revealed that cellulase genes were acquired early in the evolutionary history of these groups. Domain architectures and predicted 3D enzyme structures indicate that these cellulases are functional. Patterns of presence and absence of these genes across different lineages prompt further investigation into their evolutionary and ecological benefits. The ubiquity of cellulase genes suggests that soil invertebrates may play a role in lignocellulose decomposition, independently or in synergy with microorganisms. Understanding the ecological and evolutionary implications might be crucial for understanding soil food webs and the carbon cycle.