High Level Of Plasticity Research Articles

Characterization and ceramic properties evaluation of Lombok clay

Purpose. This research aims to assess the characteristics of ceramics made from Lombok clay to optimize the quality of ceramic products in the Lombok region and surrounding areas. Methods. Methods used to characterize Lombok clay include measuring its chemical composition, loss on ignition, plasticity level and conducting mineral analysis. Additionally, the influence of sintering temperature on clay properties and shrinkage is studied. Findings. The main mineral component of Lombok clay is kaolin, which has a high level of plasticity and a water absorption rate of 7 ± 0.6%. The ceramic body produced from this clay is classified as semi-porcelain, making it suitable for medium-sized tableware manufactured using the rotating technique. Originality. This research highlights the effect of sintering temperature on the mineral transformation of Lombok clay and provides valuable information on its optimal applications. It fills a gap in the literature by providing comprehensive data on clay properties and optimal processing conditions that have previously been underexplored. Practical implications. Lombok clay is used predominantly by small-scale ceramic craftsmen in Lombok and Bali due to its relatively low market price. With the findings of this study, these craftsmen can enhance the quality of their products to semi-porcelain standards by adjusting the sintering temperature.

Understanding the significance of oxygen tension on the biology of Plasmodium falciparum blood stages: From the human body to the laboratory

Plasmodium falciparum undergoes sequestration within deep tissues of the human body, spanning multiple organ systems with differing oxygen (O2) concentrations. The parasite is exposed to an even greater range of O2 concentrations as it transitions from the human to the mosquito host, suggesting a high level of plasticity as it navigates these different environments. In this review, we explore factors that may contribute to the parasite’s response to different environmental O2 concentrations, recognizing that there are likely multiple pieces to this puzzle. We first review O2-sensing mechanisms, which exist in other apicomplexans such as Toxoplasma gondii and consider whether similar systems could exist in Plasmodium. Next, we review morphological and functional changes in P. falciparum’s mitochondrion during the asexual-to-sexual stage transition and discuss how these changes overlap with the parasite’s access to O2. We then delve into reactive oxygen species (ROS) as ROS production is influenced by O2 availability and oxidative stress impacts Plasmodium intraerythrocytic development. Lastly, given that the primary role of the red blood cell (RBC) is to deliver O2 throughout the body, we discuss how changes in the oxygenation status of hemoglobin, the RBC’s O2-carrying protein and key nutrient for Plasmodium, could also potentially impact the parasite’s growth during intraerythrocytic development. This review also highlights studies that have investigated P. falciparum biology under varying O2 concentrations and covers technical aspects related to P. falciparum cultivation in the lab, focusing on sources of technical variation that could alter the amount of dissolved O2 encountered by cells during in vitro experiments. Lastly, we discuss how culture systems can better replicate in vivo heterogeneity with respect to O2 gradients, propose ideas for further research in this area, and consider translational implications related to O2 and malaria.

Can acclimation of freshwater rotifers to silver nanoparticles or 5-fluorouracil influence their multi- and transgenerational effects?

Emerging chemical contaminants (ECCs) are among the major environmental threats in present century. A variety of ECCs is released into aquatic environments with little knowledge about their long-term impacts to organisms. We examined the role of acclimation of the freshwater rotifer Brachionus calyciflorus to silver nanoparticles (Ag-NPs) and 5-fluorouracil (5-FU) for determining their ability to deal with these ECCs individually and in mixtures along multiple generations. Additionally, transgenerational effects were also assessed during the recovery phase. Rotifers acclimated at EC10 of Ag-NPs along generations showed a higher ability to deal with higher concentrations of these nanoparticles or 5-FU along generations. Rotifers acclimated to EC10 of 5-FU showed varied responses, as their population growth rates were affected at the initial generations once exposed to higher concentration (EC50) of the same or a new contaminant; however, the rotifers acquired resistance in later generations. The exposure of generational Ag-NP-acclimated rotifers to the mixture of Ag-NPs and 5-FU at EC50 led to a shift from no effects to negative effects along successive generations, suggesting a decrease in resistance, which remained even in the post-exposure recovery phase. Similar transgenerational adverse effects were also observed for the generational Ag-NP-acclimated rotifers released from 5-FU. Rotifers acclimated to 5-FU showed a decrease in population growth rate at the first generation of recovery phase, possibly shifting their optimal environmental conditions when released from contaminants. Overall, our results suggest that rotifers had a high level of plasticity to ECC exposure in freshwaters; however, acclimation can be generic or contaminant dependent.

RESEARCH ON THE RELATIONSHIP BETWEEN THE THICKNESS AND THE STRUCTURAL CONDITION OF ROLLED METAL FROM LOW-CARBON LOW-ALLOY STEEL 10G2FB

When choosing steels for the design of high-rise and long-span buildings with increased load-bearing capacity, it is advisable to give preference to thick rolled steel from low-carbon, low-alloy steels, since it, with the same level of strength as construction steels, has a higher level of plasticity. At the same time, the problem of using thick rolled steel from low-carbon, low-alloy steels in the construction industry are the anisotropy of the rolled metal properties, which can increase with an increase in the thickness of the rolled metal. Currently, in Ukraine, controlled rolling is one of the most promising technologies of high-temperature thermomechanical processing for the production of thick rolled metal from low-carbon, low-alloy steels. At the same time, with an increase in the thickness of the rolled metal, which is produced with this technological scheme, the effect of the regulated formation of the structural state decreases due to the influence on the temperature of the surface layers of the rolled metal, the thermodynamic state of the inner layers and the inability of the rolling equipment available at domestic enterprises to deform the metal over the entire cross-sectional area. Therefore, the task of obtaining such a structural state in the thick sheet metal roll, which will ensure the reduction of the anisotropy of the properties, which will allow the use of such rolled metal in the construction industry, is urgent. Purpose of the article is to study of the structural state of low-carbon low-alloy steel 10G2FB, which was produced using the technology of controlled rolling, depending on the thickness of the rolled metal. Conclusion. The relationship between the structural state and the thickness of rolled metal from low-carbon low-alloy steel 10G2FB, which was produced by controlled rolling technology, was studied. It was established that with the increase in thickness, the percentage content of the ferrite component increases with a simultaneous decrease in the percentage content of the pearlite phase. It is shown that changes in the formation languages of structural components begin with an increase in the thickness of the rolled metal over 30 mm, which is explained by the influence of the temperature of the inner layers on the processes of forming the structural state, namely, with an increase in the thickness of the rolled metal, the thermodynamic rate of phase transformations in the middle layers of the rolled metal samples decreases. This conclusion is confirmed by two factors: firstly, an increase in the size of pearlite colonies, and secondly, a change in the morphology of the cementite framework of pearlite colonies from zigzag (thickness 16...30 mm) to ribbon (thickness 40...100 mm).

Counter-gradient variation in gene expression between fish populations facilitates colonization of low-dissolved oxygen environments.

The role of phenotypic plasticity during colonization remains unclear due to the shifting importance of plasticity across timescales. In the early stages of colonization, plasticity can facilitate persistence in a novel environment; but over evolutionary time, processes such as genetic assimilation may reduce variation in plastic traits such that species with a longer evolutionary history in an environment can show lower levels of plasticity than recent invaders. Therefore, comparing species in the early stages of colonization to long-established species provides a powerful approach for uncovering the role of phenotypic plasticity during different stages of colonization. We compared gene expression between low-dissolved oxygen (DO) and high-DO populations of two cyprinid fish: Enteromius apleurogramma, a species that has undergone a recent range expansion, and E. neumayeri, a long-established native species in the same region. We sampled tissue either immediately after capture from the field or after a 2-week acclimation under high-DO conditions, allowing us to test for both evolved and plastic differences in low-DO vs high-DO populations of each species. We found that most genes showing candidate-evolved differences in gene expression did not overlap with those showing plastic differences in gene expression. However, in the genes that did overlap, there was counter-gradient variation such that plastic and evolved gene expression responses were in opposite directions in both species. Additionally, E. apleurogramma had higher levels of plasticity and evolved divergence in gene expression between field populations. We suggest that the higher level of plasticity and counter-gradient variation may have allowed rapid genetic adaptation in E. apleurogramma and facilitated colonization. This study shows how counter-gradient variation may impact the colonization of divergent oxygen environments.

Effect of loading conditions on short fatigue crack propagation behaviours in cast Al[sbnd]Si alloys

The effect of loading conditions on short crack propagation behaviours in cast AlSi alloys was investigated by a combination of photo-microscopy monitoring and post mortem analysis. The findings suggest that the path of short cracks is minimally influenced by loading conditions, whereas loading conditions significantly affect the fatigue crack growth rate (FCGR) and its statistical characteristics. Crack closure effect is observed under zero and negative stress ratio conditions. Roughness-induced crack closure occurs due to the coarse grain microstructure of cast AlSi alloys and the Stage-I mode growth of cracks within grains in the microstructural short crack regime. The high level of plasticity around the crack tip under negative stress ratio conditions has a significant impact on FCGR, resulting in a negative crack opening stress. When the stress ratio exceeds approximately 0.3, short cracks exhibit no crack closure. The load-level effect is observed only at high load conditions with negative stress ratios. Finally, a probabilistic short crack growth model was established using a Bayesian linear regression model to analyse the effect of stress ratio on the uncertainty of FCGR. After considering the crack closure effect, the difference in distributions of FCGR model parameters decreases significantly among different stress ratio conditions.

CHARACTERISTICS OF THERMOPLASTIC POLYMER DENTURE BASE MATERIALS FOR PROSTHODONTIC CONSTRUCTIONS

Introduction. In dentistry, there is a wide range of thermoplastic polymers for the removable constructions of dental prostheses, which are extremely promising in modern dental practice. Successful prosthetics of patients will depend on the properties of the selected structural materials.. Purpose of the study was to summarize current information, based on a review of literary sources, on the use of thermoplastic base materials for the manufacture of removable prostheses and improves the effectiveness of orthopedic treatment of patients with complete or partial absence of teeth. Methods. A literature review was conducted using PubMed, Web of Science, SCOPUS, Google Scholar up to January 2024. There was no restriction on the date of publication or language. Searches using the MeSH (Medical Subject Headings) terms were conducted using synonyms and combinations of the following search terms: "removable prosthetics", "dental base materials", "thermoplastics" "materials science", and "adaptation". Used methods: bibliographic and analytical. Results. Thermoplastic materials are characterized by bioinertness for the organism, because they do not contain residual monomer. The technology of injection molding of thermoplastic polymers is considered as a promising technology in modern dentistry to achieve high aesthetic standards. The general characteristic of this group of materials is the absence of residual monomer and, accordingly, their biological indifference, a high level of plasticity, precision during the manufacture of the prosthesis, and a wide range of colours. Conclusion. Polymer denture base plastics do not have optimal physico-mechanical, biological and surface characteristics, so the search for new materials for the manufacture of removable prostheses remains a promising direction

Potential roles for efferocytosis in glioblastoma immune evasion.

Glioblastoma is an aggressive and incurable brain cancer. This cancer establishes both local and systemic immunosuppression that creates a major obstacle to effective immunotherapies. Many studies point to tumor-resident myeloid cells (primarily microglia and macrophages) as key mediators of this immunosuppression. Myeloid cells exhibit a high level of plasticity with respect to their phenotype and are capable of both stimulating and repressing immune responses. How glioblastomas recruit myeloid cells and exploit them to avoid the immune system is an active area of research. Macrophages can acquire an immunosuppressive phenotype as a consequence of exposure to cytokines such as TGFB1 or IL4; in addition, macrophages can acquire an immunosuppressive phenotype as a consequence of the engulfment of apoptotic cells, a process referred to as efferocytosis. There is substantial evidence that glioblastoma cells are able to secrete cytokines and other factors that induce an immunosuppressive phenotype in macrophages and microglia. However, less is known about the contribution of efferocytosis to immunosuppression in glioblastoma. Here I review the literature in this area and discuss the potential of efferocytosis inhibition to improve glioblastoma response to immunotherapy.

Morphophysiological changes in Bauhinia cheilantha (Bong.) Steud. (Fabaceae) caused by water deficit

Drought-induced alterations often result in plant acclimation responses, though the extent to which these traits adjust, and their true significance remain species-specific and subject to debate. In order to discern which traits exhibit plasticity and essentiality for the species' survival, we studied the morpho-physiological responses of Bauhinia cheilantha seedlings subjected to varying water regimes. We examined modifications in growth patterns, resource allocation and partitioning, morphological traits, organic solute synthesis, relative water content in leaves and roots, and the plasticity index for each trait under different water supply levels. Several traits linked to plant growth were reduced under stress, but those changes were not considered to be plastic. The concentration of organic solutes increased under stress and exhibited a reversible behavior by reducing their levels after re-irrigation. These alterations underscored the significance of such compounds for survival during water deficit periods and the high degree of adaptability. B. cheilantha exhibits morpho-physiological plasticity, as demonstrated by alternating high levels of plasticity in physiological and morphological features, which are associated with moderate drought stress. The study discusses how these changes affect the growth and survival of the species.

A Longitudinal Single-Cell Atlas of Treatment Response in Pediatric AML

Introduction: Pediatric acute myeloid leukemia (pAML) is a heterogeneous disease in terms of driver alterations, treatment response and patient outcomes. Although approximately 90% of pAML patients respond to initial treatment, tumours relapse frequently. Despite large-scale genomic sequencing efforts, it remains elusive why tumors relapse. Previously, mutations have been identified that affect transcriptional regulation, indicating that epigenetic processes may contribute to treatment resistance in pAML. We therefore studied how tumor epigenetic patterns, transcriptional regulation and cell populations change over the course of treatment using single-cell ATAC sequencing (scATAC-seq) and single-cell RNA sequencing (scRNA-seq) in pediatric populations. Methods: We profiled 330,047 cells using scRNA-seq and 353,984 cells using scATAC-seq derived from 28 uniformly treated pAML patients, driven by either MLL fusions, CBFB fusions, RUNX1 fusions, FLT3-ITD or other aberrations (i.e. CEBPA mutations). All patients were enrolled in the AAML1031 trial (https://childrensoncologygroup.org/aaml1031), a randomized phase 3 clinical trial that investigated the addition of Bortezomib (BTZ) and Sorafenib to standard treatment modalities. Samples were obtained serially at diagnosis, at remission and at relapse and single-cell profiles were compared between these stages. Results: We identified malignant and non-malignant populations in the scATAC-seq and scRNA-seq data, showing that in all cases, malignant cells from patients at diagnosis were distinct from those taken at relapse. Major differences between diagnosis and relapse were associated with differentiation, and by inferring distinct cell populations we identified that relapsed cell populations appeared to shift towards a more primitive state. The extent of this shift was dependent on the genetic subtype and the effects were more pronounced in MLL-rearranged tumors. To identify the candidate mechanisms and transcription factors involved in this shift we studied the monocytic, lymphocytic and erythrocytic lineages in non-malignant cells and compared these to the tumor at diagnosis and relapse. Based on motif enrichment we found that across all different subgroups, transcription factors (TFs) that drive monocytic differentiation (i.e. CEBPA) have a lower activity while TFs driving erythrocytic and lymphocytic differentiation (i.e. TCF3) have a higher activity. Analysis of hematopoietic stem-like and progenitor-like cells (HSPC-like) confirmed this change, indicating that the “priming” towards other lineages is not only a result of shifts in cell populations but also a result of rewiring of early progenitors. To investigate this rewiring, we analysed regions of open chromatin that were enriched in malignant HSPCs compared to normal HSPCs across different subgroups. We found that those regions were highly specific to the driving alteration and were enriched for MEF2C binding sites in MLL-driven tumors and AP-1 binding sites in other tumors. Overall, upon relapse MEF2C expression and inferred TF activity appeared to increase, coinciding with an apparent increase in lymphoid priming and early lymphoid factors including LMO2, LYL1 and TCF3, among others. Two cases in the cohort appeared to switch lineage from a monocytic to lymphocytic phenotype and were enriched in CD19 and CD79A positive malignant cells upon relapse. Both cases shared the characteristic that MEF2C was upregulated upon relapse and showed upregulation of typical B-lymphoid transcription factors such as PAX5. Discussion: By generating a large dataset of pediatric AML patient samples collected at diagnosis, remission and relapse, we have identified changes in cellular hierarchies and transcriptional networks that occur upon relapse. Our study shows that shifts in cell populations readily occur upon treatment and are dependent on subgroup-defining alterations. Particularly MLL-rearranged tumors show a high level of plasticity that could explain the poor outcome of this group. Furthermore, we show that tumors appear to adapt their transcriptional programs towards a more “stem-like” state, with a likely higher propensity to differentiate towards other lineages such as the lymphoid lineage. We have identified MEF2C as a possible regulator of these processes, opening a new perspective to target the plasticity of these tumors.

T-Cell Signaling Mediates the Epigenetic Priming of Germinal Center B-Cell Plasticity and Stem Functionality

Chemo-immunotherapy can prolong life expectancy of patients with Diffuse Large B-cell Lymphomas (DLBCL). However, the emergence of donor-derived lymphoma cases after stem cell transplantation and the relapse of a third of DLBCL patients, strongly suggests the existence of persisting lymphoma repopulating cells (LRC) with stem-like functionality. This apparently controversial concept arises from the fact that DLBCLs originate from mature rather than progenitor cells. Identifying the biological and epigenetic features of these elusive LRC, and how they arise from normal germinal center (GC) B cells, is therefore critical and remains underexplored. Although fully mature, GC B cells naturally manifest remarkable phenotypic plasticity as compared to other cell types. We hypothesized that this plasticity reflects stem-like programming and functionality. Along these lines, we found that GC B cells are uniquely enriched for pluripotent stem cell transcriptional signatures, and increased chromatin accessibility at stem cell enhancers. We reasoned that the capacity to undergo induced Pluripotent Stem Cells (iPSC) reprogramming could serve as a surrogate assay for stem-like plasticity. Therefore, we investigated the potential of GC B cells to form iPSCs using a doxycycline-dependent mouse strain that enables the inducible expression of Yamanaka transcription factors (TF) in any given cell. Strikingly, GC B cells isolated from our mice manifested a 10-fold (p<0.0001) increase in iPSC reprogramming as compared to other mature B cells. GC B cells are a heterogenous mix of functionally distinct subpopulations. Using single cell RNA-seq and iPSC assays in sorted cells, we noted that the rare population (~3%) of GC B cells selected by T-cell help manifested the stem-like transcriptional profile and iPSC reprogramming phenotype. Moreover, blocking T-cell help during the GC reaction in vivo using CD40 blockade abrogated iPSC forming capacity. Lymphoma-associated EZH2 Y641F mutations impair GC B-cell interactions with T FH cells due to aberrant repression of immune synapse genes. Accordingly, EZH2 Y641F GC B cells manifested loss of the iPSC phenotype. T-cell help induces MYC in GC B cells. However, induction of MYC in mature naïve B cells did not confer them with iPSC potential indicating that other mechanisms must be at play. Lymphoma-associated Btg1 Q36Hmutations confer fitness in GC B cells by enhancing their response to T-cell help. Reciprocal to EZH2 Y641F, Btg1 Q36Hmutant GC B cells manifested further significant increase in iPSC formation. Performing multi-ome (simultaneous single-cell RNAseq and ATACseq) studies in GC B cells revealed massive gain in chromatin accessibility of bona fide stem cell super-enhancers in GC B cells that received T-cell help. There was also a reduced accessibility at genes that maintain B-cell lineage (e.g. Pax5) and GC phenotypes (e.g. Foxo1). Finally, lymphoma-associated Histone 1 mutations induce upregulation of stem cell programs in GCs and could enhance iPSC reprogramming in fibroblasts. We therefore hypothesized that H1 deficiency would overcome the GC dependency on T-cells for their plasticity phenotype. Indeed, increased iPSC formation occurred across all GC subpopulations in H1 C/E-/- (HIST1C/HIST1E knockout) mice. We speculate that restricting plasticity to B cells under selection by T cells, limits the potential for GC B cells to acquire high levels of plasticity, hence reducing the potential for these cells to initiate lymphomas. Consistent with this notion, we found that DLBCL patients enriched for these stem cell signatures manifested inferior clinical outcomes.

Metagenomic Studies Reveal the Evidence of Akkermansia muciniphila and Other Probiotic Bacteria in the Gut of Healthy and Enterocytozoon hepatopenaei (EHP)-Infected Farmed Penaeus vannamei.

Penaeus vannamei (whiteleg shrimp) is the most widely cultured shrimp globally. Enterocytozoon hepatopenaei (EHP), a microsporidian parasite, infects P. vannamei and causes severe growth retardation, subsequent production, and economic losses in the shrimp culture. The influence of EHP infection in the shrimp gut microbiota is poorly studied, and this would be an interesting area to investigate since the gut microbiome of shrimp influences a number of key host processes such as digestion and immunity. In this study, a metagenomic approach was followed to compare the overall species richness of the gut microbiota of EHP-infected and healthy P. vannamei. Bacterial genomic DNA from the healthy and EHP-infected gut sample were profiled for the bacterial 16S rRNA gene, targeting the V3-V4 conserved region. Operational taxonomic units (OTUs), an approximation of definitive taxonomic identity, were identified based on the sequence similarity within the sample reads and clustered together using a cut-off of 97% identity using UCLUST. The OTUs were then used for the computation of alpha diversity and beta diversity for each sample. EHP-infected gut sample showed lower bacterial abundance throughout the family, class, order, genus, and species levels when compared to healthy gut sample. This study shows that the shrimp gut microbiota is sensitive and exhibits a high level of plasticity during a microsporidian infection like EHP. Furthermore, Akkermansia muciniphila, a novel probiotic bacterium, has been reported in the shrimp gut for the first time.

Assessment of the adaptability of spring film oats in terms of yield and grain quality in the conditions of the Kirov region

Studies were carried out in order to assess the varieties and lines of spring covered oats by the ability to form stable high quality grain yields in the conditions of the Kirov region; to identify promising highly adaptive, plastic genotypes that most fully realize their yield potential in changing environmental conditions. The results of the study of 11 varieties and promising lines of spring covered oats in the nursery of competitive variety testing in the Kirov region in the period from 2020 to 2022 are presented. The Krechet varieties were used as standards generally accepted in the Volga-Vyatka region (during the research period), which are included in the State Register. The most optimal conditions for the growth and development of oats were in 2022 and 2020 when the duration of the period from seedlings to heading averaged 52 and 46 days, and the average yield in varieties was 6.21 and 6.18 t/ha, respectively. Promising lines 91h18 (6.14 t/hа) and 41h18 (5.78 t/hа), which is 0.95 and 0.59 t/ha higher than the Krechet standard. Were characterized by the highest yield while line 91h18 had a high level of plasticity (bi =1.13) and stability (Si2=0.00) based on «yield» parameter. A fairly high plasticity (bi= 1.12) and stability (Si2= 0.01) in terms of yield and grain quality indicators (for protein - bi= 1.12, Si2= 0.20, fat - bi= 1.11, Si2 = 0.00) is characterized by an intensive ‘Medved’ type variety. High indices of plasticity (bi = 1.42) and stability (Si2 = 0.00) on the basis of the parameter «grain protein content» were noted at line 162h15. The highest grain fat content was characterized for lines 178h13 (5.3 %), 4h14 (5.4 %), and 41h18 (5.6 %). Almost all the studied varieties have a high stability (Si2=0,00…0,21) of the sign. When increasing the plasticity and stability of varieties in terms of yield, a decrease in these grain quality indicators was observed, as well as a close negative relationship of the grain protein content with yield (r = -0.83). A high degree of positive dependence of the duration of the germination-heading period with HTC (r = 0.97) and yield (r = 0.79) has been established.

M1/M2 macrophages and their overlaps - myth or reality?

Macrophages represent heterogeneous cell population with important roles in defence mechanisms and in homoeostasis. Tissue macrophages from diverse anatomical locations adopt distinct activation states. M1 and M2 macrophages are two polarized forms of mononuclear phagocyte in vitro differentiation with distinct phenotypic patterns and functional properties, but in vivo, there is a wide range of different macrophage phenotypes in between depending on the microenvironment and natural signals they receive. In human infections, pathogens use different strategies to combat macrophages and these strategies include shaping the macrophage polarization towards one or another phenotype. Macrophages infiltrating the tumours can affect the patient's prognosis. M2 macrophages have been shown to promote tumour growth, while M1 macrophages provide both tumour-promoting and anti-tumour properties. In autoimmune diseases, both prolonged M1 activation, as well as altered M2 function can contribute to their onset and activity. In human atherosclerotic lesions, macrophages expressing both M1 and M2 profiles have been detected as one of the potential factors affecting occurrence of cardiovascular diseases. In allergic inflammation, T2 cytokines drive macrophage polarization towards M2 profiles, which promote airway inflammation and remodelling. M1 macrophages in transplantations seem to contribute to acute rejection, while M2 macrophages promote the fibrosis of the graft. The view of pro-inflammatory M1 macrophages and M2 macrophages suppressing inflammation seems to be an oversimplification because these cells exploit very high level of plasticity and represent a large scale of different immunophenotypes with overlapping properties. In this respect, it would be more precise to describe macrophages as M1-like and M2-like.

Modelling the effects of ration on individual growth of Oncorhynchus tshawytscha under controlled conditions.

Fed aquaculture is one of the fastest growing and most valuable food production industries in the world. The efficiency with which farmed fish convert feed into biomass influences both environmental impact and economic revenue. Salmonid species, such as king salmon (Oncorhynchus tshawytscha), exhibit high levels of plasticity in vital rates such as feed intake and growth rates. Accurate estimations of individual variability in vital rates are important for production management. The use of mean trait values to evaluate feeding and growth performance can mask individual-level differences that potentially contribute to inefficiencies. Here, we apply a cohort integral projection model (IPM) framework to investigate individual variation in growth performance of 1625 individually tagged king salmon fed one of three distinct rations of 60%, 80% and 100% satiation and tracked over a duration of 276 days. To capture the observed sigmoidal growth of individuals, we compared a non-linear mixed-effects (logistic) model to a linear model used within the IPM framework. Ration significantly influenced several aspects of growth, both at the individual and at the cohort level. Mean final body mass and mean growth rate increased with ration, however, variance in body mass and feed intake also increased significantly over time. Trends in mean body mass and individual body mass variation were captured by both logistic and linear models, suggesting the linear model to be suitable for use in the IPM. We also observed that higher rations resulted in a decreasing proportion of individuals reaching the cohort's mean body mass or larger by the end of the experiment. This suggests that, in the present experiment, feeding to satiation did not produce the desired effects of efficient, fast, and uniform growth in juvenile king salmon. While monitoring individuals through time is challenging in commercial aquaculture settings, recent technological advances combined with an IPM approach could provide new scope for tracking growth performance in experimental and farmed populations. Using the IPM framework might allow the exploration of other size-dependent processes affecting vital rate functions, such as competition and mortality. This article is protected by copyright. All rights reserved.

Changes in the Amount and Distribution of Soil Nutrients and Neighbours Have Differential Impacts on Root and Shoot Architecture in Wheat (Triticum aestivum).

Plants exhibit differential behaviours through changes in biomass development and distribution in response to environmental cues, which may impact crops uniquely. We conducted a mesocosm experiment in pots to determine the root and shoot behavioural responses of wheat, T. aestivum. Plants were grown in homogeneous or heterogeneous and heavily or lightly fertilized soil, and alone or with a neighbour of the same or different genetic identity (cultivars: CDC Titanium, Carberry, Glenn, Go Early, and Lillian). Contrary to predictions, wheat did not alter relative reproductive effort in the presence of neighbours, more nutrients, or homogenous soil. Above and below ground, the plants' tendency to use potentially shared space exhibited high levels of plasticity. Above ground, they generally avoided shared, central aerial space when grown with neighbours. Unexpectedly, nutrient amount and distribution also impacted shoots; plants that grew in fertile or homogenous environments increased shared space use. Below ground, plants grown with related neighbours indicated no difference in neighbour avoidance. Those in homogenous soil produced relatively even roots, and plants in heterogeneous treatments produced more roots in nutrient patches. Additionally, less fertile soil resulted in pot-level decreases in root foraging precision. Our findings illustrate that explicit coordination between above- and belowground biomass in wheat may not exist.

Study of the diets of two coexisting species – invasive Chinese sleeper (Perccottus glenii Dybowski, 1877) and native European perch (Perca fluviatilis Linnaeus, 1758)

In Poland, the Chinese sleeper Perccottus glenii is one of the alien fish species which, by effectively competing with native species, may contribute to the weakening of their population and a reduction of the biodiversity. The aim of this paper is to study the diets of two coexisting species: the native European perch Perca fluviatilis and the invasive Chinese sleeper. The fish were collected from a watercourse used for draining water from a fishing farm, located in the Nida River water system (Poland), using the electrofishing method. The captured fish were killed, preserved in a 4% formaldehyde solution and the stomachs of the fish were dissected. Then, based on the materials collected from these stomachs, the abundance and taxonomic rankings of the individual diet components (quantity of individuals in the individual taxa) were determined. The overlap of the P. fluviatilis and P. glenii feeding spectra was studied using a principal component analysis (PCA). The analysis of the data collected demonstrated that the diets of these two species overlaps considerably. At the same time, the analysis of the major diet components showed that the niche used by P. fluviatilis is broader than that used by P. glenii. It seems that, due to its high level of plasticity, P. fluviatilis is able to withstand the pressures of P. glenii and is also able to limit its abundance. Both species frequently choose fish as their prey, including juvenile common carp Cyprinus carpio Linnaeus, 1758, which indicates that together with native predators, P. glenii may pose a considerable threat to farmed juvenile Cyprinidae.

An integrated transcriptomic and metabolomic approach to investigate the heterogeneous Candida albicans biofilm phenotype

Candida albicans is the most prevalent and notorious of the Candida species involved in bloodstream infections, which is characterised by its capacity to form robust biofilms. Biofilm formation is an important clinical entity shown to be highly variable among clinical isolates. There are various environmental and physiological factors, including nutrient availability which influence the phenotype of Candida species. However, mechanisms underpinning adaptive biofilm heterogeneity have not yet been fully explored.Within this study we have profiled previously characterised and phenotypically distinct C. albicans bloodstream isolates. We assessed the dynamic susceptibility of these differing populations to antifungal treatments using population analysis profiling in addition to assessing biofilm formation and morphological changes. High throughput methodologies of RNA-Seq and LC-MS were employed to map and integrate the transcriptional and metabolic reprogramming undertaken by heterogenous C. albicans isolates in response to biofilm and hyphal inducing serum.We found a significant relationship between biofilm heterogeneity and azole resistance (P < 0.05). In addition, we observed that in response to serum our low biofilm forming (LBF) C. albicans exhibited a significant increase in biofilm formation and hyphal elongation. The transcriptional reprogramming of LBF strains compared to high biofilm forming (HBF) was distinct, indicating a high level of plasticity and variation in stress responses by heterogenous strains. The metabolic responses, although variable between LBF and HBF, shared many of the same responses to serum. Notably, a high upregulation of the arachidonic acid cascade, part of the COX pathway, was observed and this pathway was found to induce biofilm formation in LBF 3-fold.C. albicans is a highly heterogenous bloodstream pathogen with clinical isolates varying in antifungal tolerance and biofilm formation. In addition to this, C. albicans is capable of highly complex and variable regulation of transcription and metabolic pathways and heterogeneity across isolates further increases the complexity of these pathways. Here we have shown with a dual and integrated approach, the importance of studying a diverse panel of C. albicans isolates, which has the potential to reveal distinct pathways that can harnessed for drug discovery.

The Long Noncoding RNA Gm9866/Nuclear Factor-κB Axis Promotes Macrophage Polarization.

Macrophages are a type of immune cells with high levels of plasticity and heterogeneity. They can polarize into M1 or M2 functional phenotypes. These two phenotypes exhibit a dynamic balance during polarization-related diseases and play opposing roles. Long noncoding RNAs (lncRNAs) play an important role in biological processes such as cell proliferation, death, and differentiation; however, how long noncoding RNAs affect the cellular functionality of macrophages remains to be studied. Long noncoding RNA Gm9866 was found to be closely related to macrophage polarization through bioinformatics analysis. In this study, by conducting real-time polymerase chain reaction analysis, it was observed that long noncoding RNA Gm9866 expression significantly increased after treatment with interleukin-4 but significantly decreased after treatment with lipopolysaccharide. Fluorescence in situ hybridization revealed that long noncoding RNA Gm9866 was expressed mainly in the nucleus. Real-time polymerase chain reaction analysis showed that overexpression of long noncoding RNA Gm9866 in RAW264.7 cells further promoted the expression of M2 markers MRC1 (macrophage mannose receptor 1) and MRC2 (macrophage mannose receptor 2). Western blotting analysis demonstrated inhibition of nuclear factor-κB (NF-κB) expression. EdU (5-ethynyl-2'-deoxyuridine) and TUNEL (TdT-mediated dUTP nick-end labeling) staining assays revealed that overexpression of long noncoding RNA Gm9866 promoted cell proliferation and inhibited apoptosis. These findings thus indicated that long noncoding RNA Gm9866 promoted macrophage polarization and inhibited the nuclear factor-κB signaling pathway. Thus, long noncoding RNA Gm9866 may serve as a potential diagnostic and therapeutic target for polarization-related diseases such as infectious diseases, inflammatory diseases, liver fibrosis, and tumors.

Mechanisms involved in cancer stem cell resistance in head and neck squamous cell carcinoma.

Despite scientific advances in the Oncology field, cancer remains a leading cause of death worldwide. Molecular and cellular heterogeneity of head and neck squamous cell carcinoma (HNSCC) is a significant contributor to the unpredictability of the clinical response and failure in cancer treatment. Cancer stem cells (CSCs) are recognized as a subpopulation of tumor cells that can drive and maintain tumorigenesis and metastasis, leading to poor prognosis in different types of cancer. CSCs exhibit a high level of plasticity, quickly adapting to the tumor microenvironment changes, and are intrinsically resistant to current chemo and radiotherapies. The mechanisms of CSC-mediated therapy resistance are not fully understood. However, they include different strategies used by CSCs to overcome challenges imposed by treatment, such as activation of DNA repair system, anti-apoptotic mechanisms, acquisition of quiescent state and Epithelial-mesenchymal transition, increased drug efflux capacity, hypoxic environment, protection by the CSC niche, overexpression of stemness related genes, and immune surveillance. Complete elimination of CSCs seems to be the main target for achieving tumor control and improving overall survival for cancer patients. This review will focus on the multi-factorial mechanisms by which CSCs are resistant to radiotherapy and chemotherapy in HNSCC, supporting the use of possible strategies to overcome therapy failure.