High Conservation Research Articles

The Memory-CD8+-T-Cell Response to Conserved Influenza Virus Epitopes in Mice Is Not Influenced by Time Since Previous Infection.

To protect older adults against influenza A virus (IAV) infection, innovative strategies are imperative to overcome the decrease in protective immune response with age. One approach involves the boosting of CD8+ T cells at middle age that were previously induced by natural infection. At this stage, the immune system is still fit. Given the high conservation of T-cell epitopes within internal viral proteins, such a response may confer lasting protection against evolving influenza strains at older age, also reducing the high number of influenza immunizations currently required. However, at the time of vaccination, some individuals may have been more recently exposed to IAV than others, which could affect the T-cell response. We therefore investigated the fundamental principle of how the interval between the last infection and booster immunization during middle age influences the CD8+ T-cell response. To model this, female mice were infected at either 6 or 9 months of age and subsequently received a heterosubtypic infection booster at middle age (12 months). Before the booster infection, 6-month-primed mice displayed lower IAV-specific CD8+ T-cell responses in the spleen and lung than 9-month-primed mice. Both groups were better protected against the subsequent heterosubtypic booster infection compared to naïve mice. Notably, despite the different CD8+ T-cell levels between the 6-month- and 9-month-primed mice, we observed comparable responses after booster infection, based on IFNγ responses, and IAV-specific T-cell frequencies and repertoire diversity. Lung-derived CD8+ T cells of 6- and 9-month-primed mice expressed similar levels of tissue-resident memory-T-cell markers 30 days post booster infection. These data suggest that the IAV-specific CD8+ T-cell response after boosting is not influenced by the time post priming.

The conservation value of forests can be predicted at the scale of 1 hectare

To conserve biodiversity, it is imperative to maintain and restore sufficient amounts of functional habitat networks. Therefore, the location of the remaining forests with natural structures and processes over landscapes and large regions is a key objective. Here we integrated machine learning (Random Forest) and open landscape data to scan all forest landscapes in Sweden with a 1 ha spatial resolution with respect to the relative likelihood of hosting High Conservation Value Forests. Using independent spatial stand- and plot-level validation data, we confirmed that our predictions correctly represent different levels of forest naturalness, from degraded to those with high and associated biodiversity conservation values. Given ambitious national and international conservation objectives and increasingly intensive forestry, our model and the resulting wall-to-wall mapping fill an urgent gap for assessing the achievement of evidence-based conservation targets, spatial planning, and designing forest landscape restoration.

FSC-certified forest management benefits large mammals compared to non-FSC

More than a quarter of the world’s tropical forests are exploited for timber1. Logging impacts biodiversity in these ecosystems, primarily through the creation of forest roads that facilitate hunting for wildlife over extensive areas. Forest management certification schemes such as the Forest Stewardship Council (FSC) are expected to mitigate impacts on biodiversity, but so far very little is known about the effectiveness of FSC certification because of research design challenges, predominantly limited sample sizes2,3. Here we provide this evidence by using 1.3 million camera-trap photos of 55 mammal species in 14 logging concessions in western equatorial Africa. We observed higher mammal encounter rates in FSC-certified than in non-FSC logging concessions. The effect was most pronounced for species weighing more than 10 kg and for species of high conservation priority such as the critically endangered forest elephant and western lowland gorilla. Across the whole mammal community, non-FSC concessions contained proportionally more rodents and other small species than did FSC-certified concessions. The first priority for species protection should be to maintain unlogged forests with effective law enforcement, but for logged forests our findings provide convincing data that FSC-certified forest management is less damaging to the mammal community than is non-FSC forest management. This study provides strong evidence that FSC-certified forest management or equivalently stringent requirements and controlling mechanisms should become the norm for timber extraction to avoid half-empty forests dominated by rodents and other small species.

Species identification and spatial diversity patterns of the Giant Panda National Park (GPNP) in Ya’an, Sichuan, China

National parks play a crucial role in global biodiversity preservation, with China’s Giant Panda National Park (GPNP) serving as a key stronghold for protecting unique flora and fauna endemic to diverse mountainous regions. This study focused on unraveling the dynamics of diversity within local giant panda populations and their sympatric species in the Ya’an section of the GPNP. Five specific local population patches (LPPs) were selected as subjects, utilizing data from the 4th National Giant Panda Survey. Through identification, classification, and analysis of observed species within each LPP, α and β diversity patterns were revealed, leading to actionable recommendations. A comprehensive record of 34 species spanning 5 orders and 16 families was documented. Notably, 8 species were under the first-class of the National Key Protected Wildlife List in China, and the IUCN Red List has identified 3 species – Rhinopithecus roxellana, Moschus berezovskii, and Ailurus styani – as endangered, showing its high biodiversity and conservation significance. While α-diversity assessment highlighted the DaxianglingA2 (DXLA2) with the highest Shannon-Wiener and Simpson’s indices, the QionglaishanA3 (QLSA3) exhibited greater species richness. However, these differences lacked statistical significance (P > 0.05). The Jaccard similarity coefficient indicated a stronger turnover process compared to nestedness. The dominance of turnover in total β-diversity accentuated the importance of encompassing all five LPPs in conservation strategies. The study underscored the imperative of conservation management for each LPP, with a focus on enhancing habitat connectivity between disparate small LPPs to prevent species extinction by fostering species exchange and gene flow. This pioneering research shed light on spatial utilization patterns and diversity drivers for local giant panda populations and their sympatric species within the GPNP. It provides valuable references to appraise conservation strategy effectiveness and offers scientific backing to optimize biodiversity conservation and management within national parks and protected areas.

A Forgotten Maritime Highway: Maritime Cultural Heritage of the Emperor Seamounts with Implications for High Seas Conservation

AbstractThis article seeks to complement efforts to summarize information on the exceptional natural significance of the Emperor Seamounts. The human history of the Emperor Seamounts is culturally diverse and spans thousands of years. This ranges from indigenous cultures to the period of European colonial exploration and expansion to the rise of the modern global economy and its impact on the area through the hunting of marine mammals, fishing, and the transportation of commodities across these remote waters on ships. Some of these vessels were wrecked or disappeared, and may rest on the seabed of the Emperor Seamounts. Understanding this human history is critical in approaching the assessment, ongoing study, public outreach and management of this remote region, which has been highlighted as one of the most important areas beyond national jurisdiction to protect globally.

Potential Criteria to Determine a Waqf-Based Forest Location Case Study: Bogor Waqf Forest, Bogor, Indonesia

Waqf-based forests can conserve the forest ecosystem by applying waqf principles. This initiative has been implemented in several places in Indonesia. The limited funds available for waqf-based forest development require nazhir to carefully choose the best location so that the asset can function optimally. However, no specific research has been conducted to guide the selection of the best location for this purpose. This study aimed to identify potential criteria to help determine the best site for developing a waqf-based forest. Several methods were used to collect the necessary data, including literature reviews, in-depth interviews, field observations, and focus group discussions. This study identifies four crucial criteria when selecting the best locations: a) legal, b) physical and biophysical, c) high conservation value and benefits, and d) management. In addition, each criterion has sub-criteria. Among all, legal issues receive the highest highlight as unresolved regulations can affect a forest's ownership and function. This study was the first to discuss these criteria. Future research should quantify the criteria suggested using GIS and conduct more field observations in existing waqf-based forests in Indonesia.

Parental exposure to antidepressants has lasting effects on offspring? A case study with zebrafish

Fish have common neurotransmitter pathways with humans, exhibiting a significant degree of conservation and homology. Thus, exposure to fluoxetine makes fish potentially susceptible to biochemical and physiological changes, similarly to what is observed in humans. Over the years, several studies demonstrated the potential effects of fluoxetine on different fish species and at different levels of biological organization. However, the effects of parental exposure to unexposed offspring remain largely unknown. The consequences of 15-day parental exposure to relevant concentrations of fluoxetine (100 and 1000 ng/L) were assessed on offspring using zebrafish as a model organism. Parental exposure resulted in offspring early hatching, non-inflation of the swimming bladder, increased malformation frequency, decreased heart rate and blood flow, and reduced growth. Additionally, a significant behavioral impairment was also found (reduced startle response, basal locomotor activity, and altered non-associative learning during early stages and a negative geotaxis and scototaxis, reduced thigmotaxis, and anti-social behavior at later life stages). These behavior alterations are consistent with decreased anxiety, a significant increase in the expression of the monoaminergic genes slc6a4a (sert), slc6a3 (dat), slc18a2 (vmat2), mao, tph1a, and th2, and altered levels of monoaminergic neurotransmitters. Alterations in behavior, expression of monoaminergic genes, and neurotransmitter levels persisted until offspring adulthood. Given the high conservation of neuronal pathways between fish and humans, data show the possibility of potential transgenerational and multigenerational effects of pharmaceuticals’ exposure. These results reinforce the need for transgenerational and multigenerational studies in fish, under realistic scenarios, to provide realistic insights into the impact of these pharmaceuticals.

Composition and Conservation Status of Avifauna in Urban Non-protected Important Bird Area (IBA) Site of Western India

Kumbharwada wetland, an Important Bird Area (IBA) component in Bhavnagar, Gujarat, India, is a crucial wintering ground for migratory birds. Long-term monitoring of the avian community over a period of long time-frame is an excellent way to examine the health of this IBA site and thus provide an important ground to foster the conservation of birds in the region and management of this wetland. Given this consideration, field surveys were carried out from December 2020 to May 2023, following point count method to study the avian species richness in the study area. A total of 204 bird species belonging to 20 orders and 56 families are recorded, of which 85 species are migratory and 119 are resident. Anatidae is the most species-rich avian family (16 species). Highest number of species was recorded in the month of January (165 species in 2021 and 163 species in 2022). This wetland supports 107 (52.45%) wetland-associated species and 97 (47.55%) terrestrial species of birds. Twelve species are considered as Near Threatened, four species as Vulnerable and one species (Aquila nipalensis) as Endangered in IUCN Red List of Threatened Species. Four species (Sterna aurantia, Mycteria leucocephala, Phoeniconaias minor, and Threskiornis melanocephalus) with globally declining trend, are commonly seen in the study area, which shows that the wetland is a crucial habitat for bird species with high conservation priorities. Industrialization, encroachment, discharge of sewage water and chemical effluents, high-tension powerlines, stray dogs, and expansion of exotic vegetation remained the major threats to the habitat and avian community.

Where east meets west: Phylogeography of the high Arctic North American brant goose.

Genetic variation in Arctic species is often influenced by vicariance during the Pleistocene, as ice sheets fragmented the landscape and displaced populations to low- and high-latitude refugia. The formation of secondary contact or suture zones during periods of ice sheet retraction has important consequences on genetic diversity by facilitating genetic connectivity between formerly isolated populations. Brant geese (Branta bernicla) are a maritime migratory waterfowl (Anseriformes) species that almost exclusively uses coastal habitats. Within North America, brant geese are characterized by two phenotypically distinct subspecies that utilize disjunct breeding and wintering areas in the northern Pacific and Atlantic. In the Western High Arctic of Canada, brant geese consist of individuals with an intermediate phenotype that are rarely observed nesting outside this region. We examined the genetic structure of brant geese populations from each subspecies and areas consisting of intermediate phenotypes using mitochondrial DNA (mtDNA) control region sequence data and microsatellite loci. We found a strong east-west partition in both marker types consistent with refugial populations. Within subspecies, structure was also observed at mtDNA while microsatellite data suggested the presence of only two distinct genetic clusters. The Western High Arctic (WHA) appears to be a secondary contact zone for both Atlantic and Pacific lineages as mtDNA and nuclear genotypes were assigned to both subspecies, and admixed individuals were observed in this region. The mtDNA sequence data outside WHA suggests no or very restricted intermixing between Atlantic and Pacific wintering populations which is consistent with published banding and telemetry data. Our study indicates that, although brant geese in the WHA are not a genetically distinct lineage, this region may act as a reservoir of genetic diversity and may be an area of high conservation value given the potential of low reproductive output in this species.

Shifting mammal communities and declining species richness along an elevational gradient on Mount Kenya.

Conservation areas encompassing elevation gradients are biodiversity hotspots because they contain a wide range of habitat types in a relatively small space. Studies of biodiversity patterns along elevation gradients, mostly on small mammal or bird species, have documented a peak in diversity at mid elevations. Here, we report on a field study of medium and large mammals to examine the impact of elevation, habitat type, and gross primary productivity on community structure. Species richness was observed using a camera trap transect with 219 sites situated across different habitat types from 2329 to 4657 m above the sea level on the western slope of Mt Kenya, the second highest mountain in Africa. We found that the lowest elevation natural habitats had the highest species richness and relative abundance and that both metrics decreased steadily as elevation increased, paralleling changes in gross primary productivity, and supporting the energy richness hypothesis. We found no evidence for the mid-domain effect on species diversity. The lowest elevation degraded Agro-Forestry lands adjacent to the National Park had high activity of domestic animals and reduced diversity and abundance of native species. The biggest difference in community structure was between protected and unprotected areas, followed by more subtle stepwise differences between habitats at different elevations. Large carnivore species remained relatively consistent but dominant herbivore species shifted along the elevation gradient. There was some habitat specialization and turnover in species, such that the elevation gradient predicts a high diversity of species, demonstrating the high conservation return for protecting mountain ecosystems for biodiversity conservation.

Comprehensive Genome-Wide Natural Variation and Expression Analysis of Tubby-like Proteins Gene Family in Brachypodium distachyon.

The Tubby-like proteins (TLPs) gene family is a group of transcription factors found in both animals and plants. In this study, we identified twelve B. distachyon TLPs, divided into six groups based on conserved domains and evolutionary relationships. We predicted cis-regulatory elements involved in light, hormone, and biotic and abiotic stresses. The expression patterns in response to light and hormones revealed that BdTLP3, 4, 7, and 14 are involved in light responses, and BdTLP1 is involved in ABA responses. Furthermore, BdTLP2, 7, 9, and 13 are expressed throughout vegetative and reproductive stages, whereas BdTLP1, 3, 5, and 14 are expressed at germinating grains and early vegetative development, and BdTLP4, 6, 8, and 10 are expressed at the early reproduction stage. The natural variation in the eleven most diverged B. distachyon lines revealed high conservation levels of BdTLP1-6 to high variation in BdTLP7-14 proteins. Based on diversifying selection, we identified amino acids in BdTLP1, 3, 8, and 13, potentially substantially affecting protein functions. This analysis provided valuable information for further functional studies to understand the regulation, pathways involved, and mechanism of BdTLPs.

Computational approach for identifying immunogenic epitopes and optimizing peptide vaccine through in-silico cloning against Mycoplasma genitalium

Mycoplasma genitalium is a pathogenic microorganism linked to a variety of severe health conditions including ovarian cancer, prostate cancer, HIV transmission, and sexually transmitted diseases. A more effective approach to address the challenges posed by this pathogen, given its high antibiotic resistance rates, could be the development of a peptide vaccine. In this study, we used experimentally validated 13 membrane proteins and their immunogenicity to identify suitable vaccine candidates. Thus, based on immunogenic properties and high conservation among other Mycoplasma genitalium sub-strains, the P110 surface protein is considered for further investigation. Later on, we identified T-cell epitopes and B-cell epitopes from the P110 protein to construct a multiepitope-based vaccine. As a result, the ‘NIAPISFSFTPFTAA’ T-cell epitope and ‘KVKYESSGSNNISFDS’ B-cell epitope have shown 99.53% and 87.50% population coverage along with 100% conservancy among the subspecies, and both epitopes were found to be non-allergenic. Furthermore, focusing on molecular docking analysis showed the lowest binding energy for MHC-I (−137.5 kcal/mol) and MHC-II (−183.3 kcal/mol), leading to a satisfactory binding strength between the T-cell epitopes and the MHC molecules. However, the constructed multiepitope vaccine (MEV) consisting of 54 amino acids demonstrates favorable characteristics for a vaccine candidate, including a theoretical pI of 4.25 with a scaled solubility of 0.812 and high antigenicity probabilities. Additionally, structural analyses reveal that the MEV displays substantial alpha helices and extended strands, vital for its immunogenicity. Molecular docking with the human Toll-like receptors TLR1/2 heterodimer shows strong binding affinity, reinforcing its potential to elicit an immune response. Our immune simulation analysis demonstrates immune memory development and robust immunity, while codon adaptation suggests optimal expression in E. coli using the pET-28a(+) vector. These findings collectively highlight the MEV's potential as a valuable vaccine candidate against M. genitalium.

Exploring the effects of habitat management on grassland biodiversity: A case study from northern Serbia.

Grasslands represent a biodiversity hotspot in the European agricultural landscape, their restoration is necessary and offers a great opportunity to mitigate or halt harmful processes. These measures require a comprehensive knowledge of historical landscape changes, but also adequate management strategies. The required data was gathered from the sand grasslands of northern Serbia, as this habitat is of high conservation priority. This area also has a long history of different habitat management approaches (grazing and mowing versus unmanaged), which has been documented over of the last two decades. This dataset enabled us to quantify the effects of different measures across multiple taxa (plants, insect pollinators, and birds). We linked the gathered data on plants, pollinators, and birds with habitat management measures. Our results show that, at the taxon level, the adopted management strategies were beneficial for species richness, abundance, and composition, as the highest diversity of plant, insect pollinator, and bird species was found in managed areas. Thus, an innovative modelling approach was adopted in this work to identify and explain the effects of management practices on changes in habitat communities. The findings yielded can be used in the decision making as well as development of new management programmes. We thus posit that, when restoring and establishing particular communities, priority needs to be given to species with a broad ecological response. We recommend using the decision tree as a suitable machine learning model for this purpose.

Evaluating different approaches to integrate genome-wide genetic diversity in spatial conservation prioritization

Locations for new protected areas should be identified with consideration of intraspecific genetic diversity because genetic variation enhances the adaptability of species to novel environmental conditions. The process of siting new protected areas is called spatial conservation prioritization and is often formulated as a mathematical problem to be solved with the aid of computer software. Integrating multidimensional continuous metrics of genome-wide genetic diversity in spatial conservation prioritization involves significant challenges in terms of computation speed and memory requirements. In this study, we tested and compared several approaches to approximate the multidimensional continuous metrics of genetic diversity using multidimensional discrete genetic clusters or unidimensional discrete conservation features. To this end, we applied two tools for spatial conservation prioritization, raptr and prioritizr, to genomic datasets of two fish species (the white seabream Diplodus sargus and the red mullet Mullus surmuletus) sampled throughout most of their distribution range in the Mediterranean Sea. We found that most of the approximations tested either did not achieve all genetic conservation targets or resulted in excessively high conservation costs. Nonetheless, approaches based on multidimensional genetic clusters allowed generating prioritizations with relatively small gaps in genetic objectives at very high computation speed. This might be an interesting option for exploratory or interactive analyses such as those performed in workshop with stakeholders.

Identification, Evolutionary Dynamics, and Gene Expression Patterns of the ACP Gene Family in Responding to Salt Stress in Brassica Genus.

Acyl carrier proteins (ACPs) have been reported to play a crucial role in responding to biotic and abiotic stresses, regulating growth and development. However, the biological function of the ACP gene family in the Brassica genus has been limited until now. In this study, we conducted a comprehensive analysis and identified a total of 120 ACP genes across six species in the Brassica genus. Among these, there were 27, 26, and 30 ACP genes in the allotetraploid B. napus, B. juncea, and B. carinata, respectively, and 14, 13, and 10 ACP genes in the diploid B. rapa, B. oleracea, and B. nigra, respectively. These ACP genes were further classified into six subclades, each containing conserved motifs and domains. Interestingly, the majority of ACP genes exhibited high conservation among the six species, suggesting that the genome evolution and polyploidization processes had relatively minor effects on the ACP gene family. The duplication modes of the six Brassica species were diverse, and the expansion of most ACPs in Brassica occurred primarily through dispersed duplication (DSD) events. Furthermore, most of the ACP genes were under purifying selection during the process of evolution. Subcellular localization experiments demonstrated that ACP genes in Brassica species are localized in chloroplasts and mitochondria. Cis-acting element analysis revealed that most of the ACP genes were associated with various abiotic stresses. Additionally, RNA-seq data revealed differential expression levels of BnaACP genes across various tissues in B. napus, with particularly high expression in seeds and buds. qRT-PCR analysis further indicated that BnaACP genes play a significant role in salt stress tolerance. These findings provide a comprehensive understanding of ACP genes in Brassica plants and will facilitate further functional analysis of these genes.

Abstract 2374: Bispecific and trispecific GPRC5D antibodies with potent cell-killing activity against multiple myeloma

Abstract Background: GPRC5D is a G protein-coupled receptor that is expressed on multiple myeloma cells but absent from most healthy tissues except for hair follicles. It is an attractive target for anti-tumor modalities including T cell-engaging bispecific antibodies. Recent clinical data demonstrate that combination therapy of T cell-engaging molecules individually targeting GPRC5D and BCMA on tumor cells offers unprecedented therapeutic benefits in relapsed/refractory multiple myeloma patients. A trispecific antibody that simultaneously engages these molecules while activating T cells is expected to provide comparable and additional benefits as a monotherapy. Methods: Multipass membrane proteins are valuable therapeutic targets but are largely inaccessible for antibody discovery due to structural complexity and high conservation. We developed an antibody discovery platform (MPS) tailored for membrane proteins that utilizes advanced immunization techniques including DNA, mRNA, and Lipoparticles (virus-like particles) and evolutionarily divergent host species. From the parental antibodies isolated, we engineered panels of GPRC5DxCD3 bispecific and GPRC5DxBCMAxCD3 trispecific antibodies using multiple formats and CD3 arms that encompass different geometries and binding stoichiometries. GPRC5D multispecific antibodies were tested for target specificity using Integral Molecular’s Membrane Proteome Array (MPA), and epitope residues were defined using alanine scanning mutagenesis. Both bispecific and trispecific antibodies were tested for in vitro potency and cytokine release using MM.1R and RPMI 8226 multiple myeloma cell lines. In vivo efficacy for a subset of antibodies was determined using xenograft models in PBMC-engrafted mice. Results: We immunized chickens with GPRC5D to obtain high-titer immune responses and configured resulting antibodies as T cell-engaging bispecific molecules with a CD3 binding arm. A subset of GPRC5DxCD3 bispecific antibodies displayed potent T cell-mediated cytotoxicity with picomolar potency on multiple myeloma cell lines. Antibody specificity profiling showed high specificity binding, and epitope mapping helped to explain why only some GPRC5D antibodies were active as multispecific antibodies. Bispecific molecules were then re-engineered as trispecific antibodies with additional binding to BCMA, a well-validated multiple myeloma target. GPRC5DxBCMAxCD3 trispecifics showed improved cytotoxic activity against multiple myeloma cells. Both bispecific and trispecific antibodies demonstrated a large window between cell killing and cytokine release. We will present in vivo efficacy data for a panel of bi- and trispecific molecules against MM.1R xenografts in PBMC-engrafted mice. Citation Format: Hayley Roth, Daniel Rogers, Ileine Sanchez, Breanna Tyrell, Trevor Barnes, Ami Snyder, Nenna Nowgu, Kyle Doolan, Benjamin J. Doranz, Ross Chambers, Joseph B. Rucker. Bispecific and trispecific GPRC5D antibodies with potent cell-killing activity against multiple myeloma [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2024; Part 1 (Regular Abstracts); 2024 Apr 5-10; San Diego, CA. Philadelphia (PA): AACR; Cancer Res 2024;84(6_Suppl):Abstract nr 2374.

A fungal core effector exploits the OsPUX8B.2–OsCDC48-6 module to suppress plant immunity

Proteins containing a ubiquitin regulatory X (UBX) domain are cofactors of Cell Division Cycle 48 (CDC48) and function in protein quality control. However, whether and how UBX-containing proteins participate in host–microbe interactions remain unclear. Here we show that MoNLE1, an effector from the fungal pathogen Magnaporthe oryzae, is a core virulence factor that suppresses rice immunity by specifically interfering with OsPUX8B.2. The UBX domain of OsPUX8B.2 is required for its binding to OsATG8 and OsCDC48-6 and controls its 26 S proteasome–dependent stability. OsPUX8B.2 and OsCDC48-6 positively regulate plant immunity against blast fungus, while the high-temperature tolerance heat-shock protein OsBHT, a putative cytoplasmic substrate of OsPUX8B.2–OsCDC48-6, negatively regulates defense against blast infection. MoNLE1 promotes the nuclear migration and degradation of OsPUX8B.2 and disturbs its association with OsBHT. Given the high conservation of MoNLE1 among fungal isolates, plants with broad and durable blast resistance might be generated by engineering intracellular proteins resistant to MoNLE1.

Water Reserves for the Environment: A Strategic and Temporal Analysis (2012–2022) for the Implementation of Environmental Flows in Mexico

In Mexico, the evaluations of environmental flows are regulated by the Mexican Norm NMX-AA-159-SCFI-2012, and they warrant the establishment of water reserves for the environment. However, the pressure or demand for water use limits the establishment of said reserves because their implementation is generally conditioned to water availability. This research aimed to evaluate the changes through time of the variables that serve as a basis for the implementation strategy by the Mexican government. A geographical information system was built with updated information on water availability, conservation values, and pressures for all basins nationwide. Their desired conservation status was analyzed, and the potential reserves were estimated based on the reference values. The results were examined according to the ranking changes in environmental water reserves enactment feasibility and desired conservation status of Mexican basins, the progress achieved to date, and the potential contribution to the conservation of protected areas and their connectivity if the gaps of reserves were implemented. The outcomes point towards an administrative implementation strategy with positive results despite the growing demand for water use, with a change rate higher than the one for the creation of new protected areas. Currently, basins with low demand and high conservation value have the potential to meet people’s and the environment’s water needs, and contribute to 86% of the goal set by the present administration without affecting water availability. Finally, reserving water in the priority basins would guarantee the legal protection of the flow regime in 48–50% of the hydrographic network (63,760–66,900 km) in a desired conservation status, 43–49% of wetlands of international importance (48,650–49,600 km2) and other protected areas (128,700–136,500 km2) in 85–89% of the global ecoregions represented in Mexico (780,500–852,200 km2).

Characterization of diverse lysine acylations in Bacillus thuringiensis: Substrate profiling and functional exploration.

Lysine acylation has been extensively investigated due to its regulatory role in a diverse range of biological functions across prokaryotic and eukaryotic species. In-depth acylomic profiles have the potential to enhance comprehension of the biological implications of organisms. However, the extent of research on global acylation profiles in microorganisms is limited. Here, four lysine acylomes were conducted in Bacillus thuringiensis by using the LC-MS/MS based proteomics combined with antibody-enrichment strategies, and a total of 3438 acetylated sites, 5797 propionylated sites, 1705 succinylated sites, and 925 malonylated sites were identified. The motif analysis of these modified proteins revealed a high conservation of glutamate in acetylation and propionylation, whereas such conservation was not observed in succinylation and malonylation modifications. Besides, conservation analysis showed that homologous acylated proteins in Bacillus subtilis and Escherichia coli were connected with ribosome and aminoacyl-tRNA biosynthesis. Further biological experiments showed that lysine acylation lowered the RNA binding ability of CodY and impaired the in vivo protein activity of MetK. In conclusion, our study expanded the current understanding of the global acylation in Bacillus, and the comparative analysis demonstrated that shared acylation proteins could play important roles in regulating both metabolism and RNA transcription progression.

Comprehensive genome sequence analysis of Ralstonia solanacearum gd-2, a phylotype I sequevar 15 strain collected from a tobacco bacterial phytopathogen.

Plant bacterial wilt is an important worldwide disease caused by Ralstonia solanacearum which is a complex of species. In this study, we identified and sequenced the genome of R. solanacearum strain gd-2 isolated from tobacco. Strain gd-2 was identified as R. solanacearum species complex (RSSC) phylotype I sequevar 15 and exhibited strong pathogenicity to tobacco. The genome size of gd-2 was 5.93 Mb, including the chromosomes (3.83 Mb) and the megaplasmid (2.10 Mb). Gene prediction results showed that 3,434 and 1,640 genes were identified in the chromosomes and plasmids, respectively. Comparative genomic analysis showed that gd-2 exhibited high conservation with ten highly similar strain genomes and the differences between gd-2 and other genomes were mainly located at positions GI12-GI14. 72 type III effectors (T3Es) were identified and RipAZ2 was a T3E specific to gd-2 compared with other eight sequenced strain. Our study provides a new basis and evidence for studying the pathogenic mechanism of R. solanacearum.