High Bacterial Production Research Articles

Vertical variation of bacterial production and potential role in oxygen loss in the southern Bay of Bengal.

Marine environments wherein long-term microbial oxygen consumption exceeds oxygen replenishment can be associated with oxygen minimum zones (OMZ). The Bay of Bengal OMZ (BOB-OMZ) is one of the most intense OMZs globally. To assess the contribution of bacterial oxygen consumption to oxygen loss in BOB-OMZ, we measured bacterial production (BP), temperature, salinity, and dissolved oxygen (DO) in the whole water column. We then compared the estimated bacterial oxygen demand (BOD) with diapycnal oxygen supply (DOS) at depths of 50-200 m in the southern BOB in January 2020. The average BP was 3.53 ± 3.15 μmol C m-3 h-1 in the upper 200 m of four stations, which was lower than those reported in other tropical waters. The vertical distribution of BP differed between the open ocean and nearshore areas. In the open ocean, temperature and DO were the most important predictors for BP in the whole water column. In the nearshore areas, when DO increased sharply from the suboxic state, extremely high BP occurred at 200 m. The average estimated BOD/DOS could reach up to 153% at depths of 50-200 m, indicating advection and anticyclonic eddies probably are important DO replenishment pathways in the BOB.

Regulation of Bacterial Metabolic Activities and Community Composition by Temperature in a Fringing Coral Reef

AbstractIn coral reefs, heterotrophic bacteria play an important role in driving carbon cycle and sustaining coral health. Bacterial production (BP), bacterial respiration (BR) and bacterial community composition (BCC) were determined in the Luhuitou fringing reef and the surrounding ocean in the northern South China Sea on a seasonal basis, in order to examine bacterial metabolic activity and effect of temperature on bacterial community in the fringing coral reef. Our results showed that higher BP (3.52–12.45 μg C L−1 d−1) and bacterial growth efficiency (0.16–0.28) and lower cellular BR (8.34–31.73 fg C cell−1 d−1) in the Luhuitou fringing reef than the surrounding ocean was more likely attributed to substrate availability. Enhanced dissolved organic nitrogen availability preferentially triggered the growth of bacteria with high nucleic acid content (HNA bacteria), which was most possibly responsible for high BP in the coral reef. Heterotrophic bacteria were more sensitive to temperature in the highly productive Luhuitou fringing reef than the surrounding ocean. Temperature shaped BCC by mediating enzymatic activity in the coral reef, likely triggering opportunistic infections. Warming might not only promote the growth of HNA bacteria and shift BCC in the coral reef, which was partly responsible for coral disease, but also reduce oxygen replenishment from the surface due to stratification and elevate the oxygen consumption owing to high BR, consequently threatening the survival of corals. Our findings helped to better understand how heterotrophic bacteria mediated the survival of corals in response to fluctuations of temperature.

Light-dependent niche differentiation in two mixotrophic bacterivores.

SummaryMixotrophy usually is considered with respect to the advantages gained and the associated trade‐offs of this form of nutrition, compared to specialized competitors, strict photoautotrophs and heterotrophs. However, we currently have an incomplete understanding of the functional diversity of mixotrophs and the factors controlling niche differentiation in different mixotrophic species. Here we experimentally studied the light‐dependent niche differentiation in two chrysophyte species. We show that the newly isolated Ochromonas sp. is an obligate phototroph and possibly an obligate mixotroph. In contrast, Poterioochromonas malhamensis is a facultative mixotroph; photosynthesis and heterotrophy in this species represent substitutable routes of resource acquisition. We further hypothesize that the variable plasticity in the considered traits of the here tested species may result in different niche differentiation with regard to a vertical light gradient. Ochromonas sp. should perform better in stable stratified surface water layers, where light is available, but prey abundances might be low. However, P. malhamensis should be able to also successfully grow in deeper water layers, benefiting from higher bacterial production. This study represents a first step towards understanding competition between mixotrophs engaging in different physiological strategies, and consequently their potential co‐occurrence due to niche differentiation.

Seasonal and Spatial Variability in the Biogenic Production and Consumption of Volatile Organic Compounds (VOCs) by Marine Plankton in the North Atlantic Ocean

Marine-derived volatile organic compounds (VOCs) influence global carbon cycling, atmospheric reactions, and climate. Yet, the biogenic production (sources) and consumption (sink) rates of marine VOCs are not well-constrained and are currently excluded from global chemical transport models. We directly measured the net biogenic production rates of seven VOCs (acetaldehyde, acetone, acetonitrile, dimethylsulfide, isoprene, methanethiol, and methanol) in surface seawater during four field campaigns in the North Atlantic Ocean that targeted different stages of the phytoplankton annual cycle. All of the VOCs exhibited strong seasonal trends, with generally positive rates during May (peak spring bloom) and lower, sometimes negative rates (net consumption), during November and/or March (the winter bloom minimum transition). Strong latitudinal gradients were identified for most VOCs during May and September, with greater production observed in the northern regions compared to the southern regions. These gradients reflect the interplay between high phytoplankton and bacterial productivity. During the bloom transition stages (March and September), acetaldehyde and acetone exhibited net production rates that bracketed zero, suggesting that biogenic production was either very low or indicative of a tightly coupled system with more complex underlying microbial VOC cycling. Our data provides the first direct evidence for widespread biogenic acetonitrile production and consumption in the surface ocean and the first net biogenic production rates for methanethiol in natural seawater.

Bacterioplankton dynamics driven by interannual and spatial variation in diatom and dinoflagellate spring bloom communities in the Baltic Sea

AbstractIn parts of the Baltic Sea, the phytoplankton spring bloom communities, commonly dominated by diatoms, are shifting toward the co‐occurrence of diatoms and dinoflagellates. Although phytoplankton are known to shape the composition and function of associated bacterioplankton communities, the potential bacterial responses to such a decrease of diatoms are unknown. Here we explored the changes in bacterial communities and heterotrophic production during the spring bloom in four consecutive spring blooms across several sub‐basins of the Baltic Sea and related them to changes in environmental variables and in phytoplankton community structure. The taxonomic structure of bacterioplankton assemblages was partially explained by salinity and temperature but also linked to the phytoplankton community. Higher carbon biomass of the diatoms Achnanthes taeniata, Skeletonema marinoi, Thalassiosira levanderi, and Chaetoceros spp. was associated with more diverse bacterial communities dominated by copiotrophic bacteria (Flavobacteriia, Gammaproteobacteria, and Betaproteobacteria) and higher bacterial production. During dinoflagellate dominance, bacterial production was low and bacterial communities were dominated by Alphaproteobacteria, mainly SAR11. Our results suggest that increases in dinoflagellate abundance during the spring bloom will largely affect the structuring and functioning of the associated bacterial communities. This could decrease pelagic remineralization of organic matter and possibly affect the bacterial grazers communities.

Effects of terrigenous organic substrates and additional phosphorus on bacterioplankton metabolism and exoenzyme stoichiometry.

Bamboo, as a pioneer vegetation, often forms forests on bare lands after catastrophic landslides. Compared to evergreen forest soil, bamboo forest soil is much more labile, with a higher percentage of microbially derived organic carbon (OC), lower molecular weight, and lower humic acid content. We hypothesised that different terrigenous organic matter (tOM) sources with varying lability and phosphorus (P) availability select for bacterioplankton with distinct metabolic pathways.We incubated natural bacterioplankton assemblages with tOM leached from bamboo forest soil (BOM) and evergreen forest soil (EOM) and compared these to a lake water control. To test if microbial metabolism would be limited by OC or P availability of each tOM treatment, we used acetate as an extra labile OC source and phosphate as an inorganic P source. Bacterial metabolism was measured by analysing respiration via O2 consumption and production via tritiated thymidine (TdR) assimilation.Bacterioplankton metabolism is limited by the availability of P in BOM substrates. When using BOM, bacteria had higher enzymatic activities for phosphatase. The nutrients required for bacterial biomass seemed to be derived from organic matter. Under BOM treatment, bacterial production (BP) (0.92 ± 0.13 μg C L−1 hr−1) and cell specific TdR assimilation rates (0.015 ± 0.002 10–18 M TdR cell−1 hr−1) were low. Adding P enhanced BP (BOM+P 1.52 ± 0.31 and BOM+C+P 2.25 ± 0.37 μg C L−1 hr−1) while acetate addition had no significant effect on BOM treatment.This indicated that the bacteria switched to using added inorganic P to respire a P‐limited BOM substrate, which increased total BP and abundance, resulting in even more active respiration and lower growth efficiency. We also found higher activities for chitin‐degrading enzyme β‐N‐acetylglucosaminidase, which is associated with N mining from aminosaccharides.Microbes using EOM, however, did not change metabolic strategies with additional acetate or/and inorganic P. This is due to higher concentrations of organic P in EOM substrates and the presence of inorganic N in the EOM leachates an alternative nutrient source. Bacteria produced β‐glucosidase and leucyl‐aminopeptidase in order to utilise the humic substances, which sustained greater bacterial abundance, higher BP (2.64 ± 0.39 μg C L−1 hr−1), and lower cell‐specific respiration. This yielded a much higher bacterial growth efficiency (15 ± 9.2%) than the lake water control.Our study demonstrated the aquatic metabolic discrepancy between tOM of different forest types. Bacterioplankton in BOM and EOM exhibit distinct metabolic responses. Bacterial metabolic strategy when using BOM implied that the supposedly stabilised biomass OM might be efficiently used by aquatic bacterioplankton. As the labile and nutrient‐deficient BOM is more susceptible to the influence of additional nutrients, fertiliser residues in bamboo forest catchments might have a stronger effect on aquatic bacterial metabolic pathways. Thus, it is important to take tOM differences into consideration when building models to estimate soil carbon turnover rates along a terrestrial–aquatic continuum.

Kinetic and Thermodynamic Study of Corncob Hydrolysis in Phosphoric Acid with Low Yield of Bacterial Inhibitors

In this work, high sugar yield and low bacterial inhibitor production in dilute phosphoric acid hydrolysis of corncob is reported, with 54.3 g of sugar/100 g corn cob the highest yield observed at the most severe conditions with a degradation factor of only 0.03. Hydrolyses were obtained at different acid concentrations, temperatures and reaction times to analyse the effect of these variables on sugar production and degradation into bacterial inhibitors. The paper focuses on the kinetics and thermodynamics of corncob phosphoric acid hydrolysis, a topic scarcely studied. Kinetic constants calculated from either Saeman or first-order models allowed us to determine thermodynamic parameters and understand the energetic changes during hydrolysis. Sugar production has anactivation energy of 52 kJ mol−1 and sugar decomposition 78 and 115 kJ mol−1. Fourier Transform Infrared Spectroscopy analyses showed that sugar production came mainly from hemicellulose degradation.

Bacterial degradation activity in the eastern tropical South Pacific oxygen minimum zone

Abstract. Oxygen minimum zones (OMZs) show distinct biogeochemical processes that relate to microorganisms being able to thrive under low or even absent oxygen. Microbial degradation of organic matter is expected to be reduced in OMZs, although quantitative evidence is low. Here, we present heterotrophic bacterial production (3H leucine incorporation), extracellular enzyme rates (leucine aminopeptidase/β-glucosidase) and bacterial cell abundance for various in situ oxygen concentrations in the water column, including the upper and lower oxycline, of the eastern tropical South Pacific off Peru. Bacterial heterotrophic activity in the suboxic core of the OMZ (at in situ ≤ 5 µmol O2 kg−1) ranged from 0.3 to 281 µmol C m−3 d−1 and was not significantly lower than in waters of 5–60 µmol O2 kg−1. Moreover, bacterial abundance in the OMZ and leucine aminopeptidase activity were significantly higher in suboxic waters compared to waters of 5–60 µmol O2 kg−1, suggesting no impairment of bacterial organic-matter degradation in the core of the OMZ. Nevertheless, high cell-specific bacterial production was observed in samples from oxyclines, and cell-specific extracellular enzyme rates were especially high at the lower oxycline, corroborating earlier findings of highly active and distinct micro-aerobic bacterial communities. To assess the impact of bacterial degradation of dissolved organic matter (DOM) for oxygen loss in the Peruvian OMZ, we compared diapycnal fluxes of oxygen and dissolved organic carbon (DOC) and their microbial uptake within the upper 60 m of the water column. Our data indicate low bacterial growth efficiencies of 1 %–21 % at the upper oxycline, resulting in a high bacterial oxygen demand that can explain up to 33 % of the observed average oxygen loss over depth. Our study therewith shows that microbial degradation of DOM has a considerable share in sustaining the OMZ off Peru.

A new type of plankton food web functioning in coastal waters revealed by coupling Monte Carlo Markov chain linear inverse method and ecological network analysis

Abstract Plankton food webs (PFW) typology is based on different categories of functioning, according to the dominant processes and the role played by heterotrophic bacteria, small vs large phytoplankton, and small vs large zooplankton. Investigating the structure and the function of planktonic food webs in two SW Mediterranean waters (inshore and marine sites) at four seasons, using inverse (LIM-MCMC) and ecological network (ENA) analyses, we identified a new type of food web, called the “bacterial multivorous food web”. This food web adds to the conventional trophic continuum as previously reported. The “bacterial multivorous food web” present in winter showed the lowest primary production among seasons, but highest bacterial production. Several food web ratios characterized this new typology e.g. picophytoplankton net primary production to total primary production varied from 0.20 to 0.28; bacterial to primary production ratio is higher than values reported in global scale (≅1); bacterial net production to the potential protozoan prey net production was high (>0.2). In this special food web, carbon was mostly recycled, with a moderate fraction channeled to deep waters, which lead to a higher retention of carbon inside the ecosystem. This winter PFW also seemed to be the most organized, specialized, stable and mature, as related to common interpretations of ENA. The spring was characterized by herbivorous food web, with highest activity coinciding with low stability. Although less usual, the herbivorous pathway was also observed during summer, in inshore waters. The autumn food webs, which functioned as multivorous or microbial food webs, appeared to be stable and mature. Finally, our study demonstrates the usefulness of food web models derived ratios combined with ecological network analysis indices to conduct evaluation of the structure and functioning of ecosystems and potentially to support management decisions in marine environment.

Assessing alteration of leaf litter breakdown rate influenced by dam operation in Nakatsugawa River and Arakawa River, Central Japan

Abstract The process of leaf litter breakdown is essential as a main energy source for aquatic life in stream ecosystems. This process is complicated due to the interaction among the stream's physical, chemical, and biological characteristics as well as the composition of litter. This study investigated the variation of litter breakdown rates with different water qualities and microbial activities influenced by dam operation. Litter bags were installed along Nakatsugawa River, which is regulated by Takizawa Dam, and Arakawa River in Saitama Prefecture, central Japan, during autumn and winter. Three dominant leaf species were studied, namely Quercus serrata, Carpinus cordata, and Acer mono. The factors possibly affecting the litter breakdown process were: (1) a 4 °C higher water temperature downstream than upstream of the dam in the Nakatsugawa; (2) high bacterial productivity in the Nakatsugawa; (3) high silt deposition on the litters in the Arakawa; and (4) low contents of Dissolved Organic Carbon (DOC) and nutrients in the Arakawa. In the Nakatsugawa, neither a contribution of the dam to a higher breakdown rate nor recovery of the rate to upstream conditions far downstream was found. However, the breakdown rate was lower in the Arakawa than in the Nakatsugawa. Inorganic deposition on litter, DOC, Na+, Mg2+, Ca2+ and NO3− were believed to play a main role in litter breakdown.

Significance of metabolically active bacterioplankton in the frontal regions of the Northeastern Arabian Sea

The Northeastern Arabian Sea (NEAS) experiences convective mixing during winter monsoon, which facilitates nutrient enrichment in the surface layers. This region is also known to harbour several sea surface temperature (SST) fronts and filaments, hotspots of primary production and bacterioplankton activity, which play an important role in the microbial loop. Observations on bacterioplankton with an emphasis on their physiological state, i.e., metabolically active (HNA; high nucleic acid content) bacteria and metabolically inactive (LNA; low nucleic acid content) bacteria were carried out in the NEAS region during early and peak winter monsoon (EWM and PWM). HNA bacteria were dominant in frontal zones coupled with high bacterial production (BP) indicating their significant role, whereas, LNA bacteria were abundant in non-frontal regions irrespective of the seasons. The differentiation in bacterial metabolic types points out organic matter enrichment in the fronts. During PWM, the nutrient concentration increased resulting in a further increase in HNA bacteria and BP in frontal regions. The transparent exopolysaccharides (TEP) were also higher in frontal zones, and inversely related to total bacterial abundance indicating a fast turnover of the organic matter. The age of the front and background condition prior to the formation of the front influences the relative contribution by bacterioplankton food web dynamics and these attributes would probably also help predict bacterial activities.

Bacterial-viral interactions in the sea surface microlayer of a black carbon-dominated tropical coastal ecosystem (Halong Bay, Vietnam)

Increasing human activity has raised concerns about the impact of deposition of anthropogenic combustion aerosols (i.e., black carbon; BC) on marine processes. The sea surface microlayer (SML) is a key gate for the introduction of atmospheric BC into the ocean; however, relatively little is known of the effects of BC on bacteria-virus interactions, which can strongly influence microbially mediated processes. To study the impact of BC on bacteria-virus interactions, field investigations involving collection from the SML and underlying water were carried out in Halong Bay (Vietnam). Most inorganic nutrient concentrations, as well as dissolved organic carbon, were modestly but significantly higher (p = 0.02–0.05) in the SML than in underlying water. The concentrations of particulate organic carbon (though not chlorophyll a) and of total particulate carbon, which was composed largely of particulate BC (mean = 1.7 ± 6.4 mmol L–1), were highly enriched in the SML, and showed high variability among stations. On average, microbial abundances (both bacteria and viruses) and bacterial production were 2- and 5fold higher, respectively, in the SML than in underlying water. Significantly lower bacterial production (p < 0.01) was observed in the particulate fraction (>3 µm) compared to the bulk sample, but our data overall suggest that bacterial production in the SML was stimulated by particulate BC. Higher bacterial production in the SML than in underlying water supported high viral lytic infection rates (from 5.3 to 30.1%) which predominated over percent lysogeny (from undetected to 1.4%). The sorption of dissolved organic carbon by black carbon, accompanied by the high lytic infection rate in the black carbon-enriched SML, may modify microbially mediated processes and shift the net ecosystem metabolism (ratio of production and respiration) to net heterotrophy and CO2 production in this critical layer between ocean and atmosphere.

Bacterial and primary production in the Greenland Sea

Abstract Bacterial production rates were measured in water profiles collected in the Greenland Sea and adjacent areas. Hydrography and nutrients throughout the water column were measured along 75°N from 12°W to 10°E at 20 km distance intervals. Net primary production rates from satellite sensed data were compared with literature values from 14C incubations and used for regional and seasonal comparisons. Maximum bacterial production rates were associated with the region close to the edge of the East Greenland current, and the rates decreased gradually towards the center of the Greenland Sea central gyre. Integrated over the upper 20 m the maximum bacterial production rate was 17.9 mmol C m− 2 day− 1, and east of the center of the gyre the average integrated rate was 4.6 mmol C m− 2 day− 1. It is hypothesized that high bacterial production rates in the western Greenland Sea were sustained by organic material carried from the Arctic Ocean by the East Greenland Current. The depth profiles of nitrate and phosphate were very similar both sides of the Arctic front, with 2% higher values between 500 m and 2000 m in the Arctic domain, and a N/P ratio of 13.6. The N/Si ratio varied by depth and region, with increasing silicate depletion from 1500 m depth to the surface. The rate of depletion from 1500 m depth to surface in the Atlantic domain was twice as high as in the Arctic domain. Net primary production rates in the area between the edge of the East Greenland current and the center of the Greenland Sea gyre was 96 mmol C m− 2 day− 1 at the time of the expedition in 2006, and 78 mmol C m− 2 day− 1 east of the center including the Atlantic domain. Annual net primary production estimated from satellite data in the Greenland Sea increased substantially in the period between 2003 and 2016, and the rate of increase was lowest close to the East Greenland Current.

Food web interactions determine energy transfer efficiency and top consumer responses to inputs of dissolved organic carbon

Climate change projections indicate increased precipitation in northern Europe, leading to increased inflow of allochthonous organic matter to aquatic systems. The food web responses are poorly known, and may differ depending on the trophic structure. We performed an experimental mesocosm study where effects of labile dissolved organic carbon (DOC) on two different pelagic food webs were investigated, one having zooplankton as highest trophic level and the other with planktivorous fish as top consumer. In both food webs, DOC caused higher bacterial production and lower food web efficiency, i.e., energy transfer efficiency from the base to the top of the food web. However, the top-level response to DOC addition differed in the zooplankton and the fish systems. The zooplankton production increased due to efficient channeling of energy via both the bacterial and the phytoplankton pathway, while the fish production decreased due to channeling of energy mainly via the longer and less efficient bacterial pathway. We conclude that the added DOC either acted as a subsidy by increasing the production of the top trophic level (mesozooplankton), or as a sink causing decreased top consumer production (planktivorous fish).

An active bacterial community linked to high chl-a concentrations in Antarctic winter-pack ice and evidence for the development of an anaerobic sea-ice bacterial community.

Antarctic sea-ice bacterial community composition and dynamics in various developmental stages were investigated during the austral winter in 2013. Thick snow cover likely insulated the ice, leading to high (<4 μg l-1) chlorophyll-a (chl-a) concentrations and consequent bacterial production. Typical sea-ice bacterial genera, for example, Octadecabacter, Polaribacter and Glaciecola, often abundant in spring and summer during the sea-ice algal bloom, predominated in the communities. The variability in bacterial community composition in the different ice types was mainly explained by the chl-a concentrations, suggesting that as in spring and summer sea ice, the sea-ice bacteria and algae may also be coupled during the Antarctic winter. Coupling between the bacterial community and sea-ice algae was further supported by significant correlations between bacterial abundance and production with chl-a. In addition, sulphate-reducing bacteria (for example, Desulforhopalus) together with odour of H2S were observed in thick, apparently anoxic ice, suggesting that the development of the anaerobic bacterial community may occur in sea ice under suitable conditions. In all, the results show that bacterial community in Antarctic sea ice can stay active throughout the winter period and thus possible future warming of sea ice and consequent increase in bacterial production may lead to changes in bacteria-mediated processes in the Antarctic sea-ice zone.

Carbon Bioavailability in a High Arctic Fjord Influenced by Glacial Meltwater, NE Greenland

The land-to-ocean flux of organic carbon is increasing in glacierized regions in response to increasing temperatures in the Arctic (Hood et al., 2015). In order to understand the response in ecosystem metabolism to the organic carbon input it is essential to determine the bioavailability of the different carbon sources in the system. We quantified the bacterial turnover of organic carbon in a high Arctic fjord system (Young Sound, NE Greenland) during the ice-free period (July-October 2014) and assessed the quality and quantity of the 3 major organic carbon sources; 1) local phytoplankton production 2) runoff from land-terminating glaciers and a lowland river and 3) inflow from the ocean shelf. We found that despite relatively low concentrations of DOC in the rivers, the bioavailability of the river–DOC was significantly higher than in the fjord, and characterized by high cell-specific bacterial production and low C:N ratios. In contrast, the allochthonous DOC source entering via inflow of coastal shelf waters had elevated DOC concentrations with low bioavailability, high C:N and low specific bacterial production. The phytoplankton production in the fjord could not sustain the bacterial carbon demand, but was still the major source of organic carbon for bacterial growth. We assessed the bacterial community composition and found that communities were specific for the different water types i.e. the bacterial community of the coastal coastal inflow water could be traced mainly in the subsurface water, while the glacial river community strongly dominated the surface water in the fjord.

Seasonal and spatial variation of bacterial production and abundance in the northern Levantine Sea

Spatial and temporal heterogeneity in bacterial production and abundance in relation to ambient bio-physicochemical parameters has been investigated in the Levantine Sea. Five stations with different trophic states in an area extending from highly eutrophic Mersin bay to the mesotrophic Rhodes gyre area including the oligotrophic offshore waters were sampled four times. Integrated bacterial production varied between 6.1 and 90.3 µg C m-2 d-1 with higher rates occurring during September 2012 in offshore waters. Bacterial abundance ranged between 0.18 and 7.3 x 105 cells ml-1 within the euphotic zone and was generally higher up to 100 meters throughout the study period. In offshore waters, bacterial production (0.401 to 0.050 µg C m-3 d-1), abundance (4.5 to 1.6 x 105 cells ml-1) and depth of the productive layer decreased from 150 to 75 meters westward along the transect. Although the highest abundance was observed in July 2012 in offshore waters, the highest activity was measured in September 2012. These results indicated that the temperature played a key role in regulating bacterial abundance and production in the area. High chlorophyll concentrations in March did not correspond to high bacterial abundance and production at the same time. Increase in dissolved organic carbon content following spring phytoplankton bloom and the increase in temperature in the mean time might have enhanced the bacterial activity towards summer.

A Decadal (2002–2014) Analysis for Dynamics of Heterotrophic Bacteria in an Antarctic Coastal Ecosystem: Variability and Physical and Biogeochemical Forcings

We investigated the dynamics of heterotrophic bacteria in the coastal western Antarctic Peninsula (WAP), using decadal (2002-2014) time series of two bacterial variables, bacterial production (BP) via 3H-leucine incorporation rates and bacterial biomass (BB) via bacterial abundance, collected at Palmer Antarctica Long Term Ecological Research (LTER) Station B (64.8°S, 64.1°W) over a full austral growing season (October-March). Strong seasonal and interannual variability in the degree of bacterial coupling with phytoplankton processes were observed with varying lags. On average, BP was only 4% of primary production (PP), consistent with low BP:PP ratios observed in polar waters. BP was more strongly correlated with chlorophyll (Chl), than with PP, implying that bacteria feed on DOC produced from a variety of trophic levels (e.g. zooplankton sloppy feeding and excretion) as well as directly on phytoplankton-derived DOC. The degree of bottom-up control on bacterial abundance was moderate and relatively consistent across entire growing seasons, suggesting that bacteria in the coastal WAP are under consistent DOC limitation. Temperature also influenced BP rates, though its effect was weaker than DOC. We established generalized linear models (GLMs) for monthly composites of BP and BB via stepwise regression to explore a set of physical and biogeochemical predictors. Physically, high BP and large BB were shaped by a stratified water-column, similar to forcing mechanisms favoring phytoplankton blooms, but high sea surface temperature (SST) also significantly promoted bacterial processes. High BP and large BB were influenced by high PP and bulk DOC concentrations. Based on these findings, we suggest an increasingly important role of marine heterotrophic bacteria in the coastal WAP food-web as climate change introduces a more favorable environmental setting for promoting BP, with increased DOC from retreating glaciers, a more stabilized upper water-column from ice-melt, and a baseline shift of water temperature due to more frequent delivery of warming Upper Circumpolar Deep Water (UCDW) onto the WAP shelf.

Allochthonous Carbon--a Major Driver of Bacterioplankton Production in the Subarctic Northern Baltic Sea.

Heterotrophic bacteria are, in many aquatic systems, reliant on autochthonous organic carbon as their energy source. One exception is low-productive humic lakes, where allochthonous dissolved organic matter (ADOM) is the major driver. We hypothesized that bacterial production (BP) is similarly regulated in subarctic estuaries that receive large amounts of riverine material. BP and potential explanatory factors were measured during May–August 2011 in the subarctic Råne Estuary, northern Sweden. The highest BP was observed in spring, concomitant with the spring river-flush and the lowest rates occurred during summer when primary production (PP) peaked. PLS correlations showed that ∼60 % of the BP variation was explained by different ADOM components, measured as humic substances, dissolved organic carbon (DOC) and coloured dissolved organic matter (CDOM). On average, BP was threefold higher than PP. The bioavailability of allochthonous dissolved organic carbon (ADOC) exhibited large spatial and temporal variation; however, the average value was low, ∼2 %. Bioassay analysis showed that BP in the near-shore area was potentially carbon limited early in the season, while BP at seaward stations was more commonly limited by nitrogen-phosphorus. Nevertheless, the bioassay indicated that ADOC could contribute significantly to the in situ BP, ∼60 %. We conclude that ADOM is a regulator of BP in the studied estuary. Thus, projected climate-induced increases in river discharge suggest that BP will increase in subarctic coastal areas during the coming century.Electronic supplementary materialThe online version of this article (doi:10.1007/s00248-015-0714-4) contains supplementary material, which is available to authorized users.

Modelling bioclogging in variably saturated porous media and the interactions between surface/subsurface flows: Application to Constructed Wetlands

Horizontal subsurface Flow Constructed Wetlands (HF CWs) are biofilters planted with aquatic macrophytes within which wastewater is treated mostly through contact with bacterial biofilms. The high concentrations of organic carbon and nutrients being transported leads to high bacterial biomass production, which decreases the flow capacity of the porous material (bioclogging). In severe bioclogging scenarios, overland flow may take place, reducing overall treatment performance. In this work we developed a mathematical model using COMSOL Multiphysics™ and MATLAB® to simulate bioclogging effects in HF CWs. Variably saturated subsurface flow and overland flow were described using the Richards equation. To simplify the inherent complexity of the processes involved in bioclogging development, only one bacterial group was considered, and its growth was described using a Monod equation. Bioclogging effects on the hydrodynamics were taken into account by using a conceptual model that affects the value of Mualem's unsaturated relative permeability. Simulation results with and without bioclogging were compared to showcase the impact of this process on the overall functioning of CWs. The two scenarios rendered visually different bacteria distributions, flow and transport patterns, showing the necessity of including bioclogging effects on CWs models. This work represents one of the few studies available on bioclogging in variably saturated conditions, and the presented model allows simulating the interaction between overland and subsurface flow occurring in most HF CWs. Hence, this work gets us a step closer to being able to describe CWs functioning in an integrated way using mathematical models.