High Arctic Soil Research Articles

Principal role of fungi in soil carbon stabilization during early pedogenesis in the high Arctic

Climate warming is causing widespread deglaciation and pioneer soil formation over glacial deposits. Melting glaciers expose rocky terrain and glacial till sediment that is relatively low in biomass, oligotrophic, and depleted in nutrients. Following initial colonization by microorganisms, glacial till sediments accumulate organic carbon and nutrients over time. However, the mechanisms driving soil nutrient stabilization during early pedogenesis after glacial retreat remain unclear. Here, we traced amino acid uptake by microorganisms in recently deglaciated high-Arctic soils and show that fungi play a critical role in the initial stabilization of the assimilated carbon. Pioneer basidiomycete yeasts were among the predominant taxa responsible for carbon assimilation, which were associated with overall high amino acid use efficiency and reduced respiration. In intermediate- and late-stage soils, lichenized ascomycete fungi were prevalent, but bacteria increasingly dominated amino acid assimilation, with substantially decreased fungal:bacterial amino acid assimilation ratios and increased respiration. Together, these findings demonstrate that fungi are important drivers of pedogenesis in high-Arctic ecosystems that are currently subject to widespread deglaciation from global warming.

High Arctic seawater and coastal soil microbiome co-occurrence and composition structure and their potential hydrocarbon biodegradation.

The accelerated decline in Arctic sea-ice cover and duration is enabling the opening of Arctic marine passages and improving access to natural resources. The increasing accessibility to navigation and resource exploration and production brings risks of accidental hydrocarbon releases into Arctic waters, posing a major threat to Arctic marine ecosystems where oil may persist for many years, especially in beach sediment. The composition and response of the microbial community to oil contamination on Arctic beaches remain poorly understood. To address this, we analyzed microbial community structure and identified hydrocarbon degradation genes among the Northwest Passage intertidal beach sediments and shoreline seawater from five high Arctic beaches. Our results from 16S/18S rRNA genes, long-read metagenomes, and metagenome-assembled genomes reveal the composition and metabolic capabilities of the hydrocarbon microbial degrader community, as well as tight cross-habitat and cross-kingdom interactions dominated by lineages that are common and often dominant in the polar coastal habitat, but distinct from petroleum hydrocarbon-contaminated sites. In the polar beach sediment habitats, Granulosicoccus sp. and Cyclocasticus sp. were major potential hydrocarbon-degraders, and our metagenomes revealed a small proportion of microalgae and algal viruses possessing key hydrocarbon biodegradative genes. This research demonstrates that Arctic beach sediment and marine microbial communities possess the ability for hydrocarbon natural attenuation. The findings provide new insights into the viral and microalgal communities possessing hydrocarbon degradation genes and might represent an important contribution to the removal of hydrocarbons under harsh environmental conditions in a pristine, cold, and oil-free environment that is threatened by oil spills.

Distinct taxonomic and functional profiles of high Arctic and alpine permafrost-affected soil microbiomes

BackgroundGlobal warming is affecting all cold environments, including the European Alps and Arctic regions. Here, permafrost may be considered a unique ecosystem harboring a distinct microbiome. The frequent freeze–thaw cycles occurring in permafrost-affected soils, and mainly in the seasonally active top layers, modify microbial communities and consequently ecosystem processes. Although taxonomic responses of the microbiomes in permafrost-affected soils have been widely documented, studies about how the microbial genetic potential, especially pathways involved in C and N cycling, changes between active-layer soils and permafrost soils are rare. Here, we used shotgun metagenomics to analyze the microbial and functional diversity and the metabolic potential of permafrost-affected soil collected from an alpine site (Val Lavirun, Engadin area, Switzerland) and a High Arctic site (Station Nord, Villum Research Station, Greenland). The main goal was to discover the key genes abundant in the active-layer and permafrost soils, with the purpose to highlight the potential role of the functional genes found.ResultsWe observed differences between the alpine and High Arctic sites in alpha- and beta-diversity, and in EggNOG, CAZy, and NCyc datasets. In the High Arctic site, the metagenome in permafrost soil had an overrepresentation (relative to that in active-layer soil) of genes involved in lipid transport by fatty acid desaturate and ABC transporters, i.e. genes that are useful in preventing microorganisms from freezing by increasing membrane fluidity, and genes involved in cell defense mechanisms. The majority of CAZy and NCyc genes were overrepresented in permafrost soils relative to active-layer soils in both localities, with genes involved in the degradation of carbon substrates and in the degradation of N compounds indicating high microbial activity in permafrost in response to climate warming.ConclusionsOur study on the functional characteristics of permafrost microbiomes underlines the remarkably high functional gene diversity of the High Arctic and temperate mountain permafrost, including a broad range of C- and N-cycling genes, and multiple survival and energetic metabolisms. Their metabolic versatility in using organic materials from ancient soils undergoing microbial degradation determine organic matter decomposition and greenhouse gas emissions upon permafrost thawing. Attention to their functional genes is therefore essential to predict potential soil-climate feedbacks to the future warmer climate.

Soil moisture drives differences in the diversity and trophic complexity of high Arctic tundra soils.

The Arctic soil communities play a vital role in stabilizing and decomposing soil carbon, which affects the global carbon cycling. Studying the food web structure is critical for understanding biotic interactions and the functioning of these ecosystems. Here, we studied the trophic relationships of (microscopic) soil biota of two different Arctic spots in Ny-Ålesund, Svalbard, within a natural soil moisture gradient by combining DNA analysis with stable isotopes as trophic tracers. The results of our study suggested that the soil moisture strongly influenced the diversity of soil biota, with the wetter soil, having a higher organic matter content, hosting a more diverse community. Based on a Bayesian mixing model, the community of wet soil formed a more complex food web, in which bacterivorous and detritivorous pathways were important in supplying carbon and energy to the upper trophic levels. In contrast, the drier soil showed a less diverse community, lower trophic complexity, with the green food web (via unicellular green algae and gatherer organisms) playing a more important role in channelling energy to higher trophic levels. These findings are important to better understand the soil communities inhabiting the Arctic, and for predicting how the ecosystem will respond to the forthcoming changes in precipitation regimes.

Concentration of different forms of phosphorus in soils affected by the little auk (Alle alle) and their relationship with tundra vegetation in Spitsbergen (Svalbard, High Arctic)

The purpose of the present study was to determine the link between planktivorous little auks (Alle alle) and their soil fertilization, the concentration of total, and different forms of phosphorus in the surface layer of the High Arctic soils and the vascular plant composition of the tundra vegetation. Samples of the surface soil layer (0–10 cm) were collected along three pairs of transects (affected and unaffected by little auks) at different locations in Spitsbergen (Svalbard). The surface layer of soils affected by little auks was characterized by a significantly higher mean concentration of Ptot (1.02–1.44 g kg−1) compared to those not affected by seabirds (0.58–0.77 g kg−1). The mean concentration of different forms of P was also generally higher in soils affected by seabirds (i.e., labile P: 0.13–0.34 g kg−1, moderately labile P: 0.31–0.90 g kg−1, stable P: 0.27–0.39 g kg−1) than in unaffected soils (labile P: 0.04–0.18 g kg−1, moderately labile P: 0.30–0.37 g kg−1, stable P: 0.12–0.24 g kg−1); however, the differences were not always significant, most likely due to the high heterogeneity of specific environmental conditions at the local scale such as soil type, soil chemical composition, and vegetation type. Vascular plant cover was significantly and positively related to the concentration of the P forms studied in the soil. The phosphorus gradient significantly altered the composition of the vascular plants and explained 58.4% of its variation. Little auks are an important source of soil phosphorus in terrestrial ecosystems in the High Arctic that significantly affect the cover and composition of vascular plants.

An Assessment of Phosphorus Fractions in the Canadian High Arctic Post-Permafrost Disturbances

Climate change is impacting all natural processes, and the phosphorus cycle is no exception. With the High Arctic warming at a significantly increased rate compared to the rest of the world, thawing permafrost could potentially release great amounts of carbon, which through cellular respiration in microbes and plants, would eventually enter the atmosphere creating a runaway positive feedback cycle. The purpose of this research is to determine the amounts of the different forms of phosphorus present in High Arctic soil after a permafrost disturbance. This project will be done as a chronosequence as opposed to a longitudinal study, as it is not practical to measure time over a period of 60-70 years.
 Soil samples were collected from the Cape Bounty Arctic Watershed Observatory on Melville Island in Canada. 3 sites were sampled, each with a different amount of time elapsed since a permafrost disturbance occurred. These 3 sites vary from the disturbance occurring 1-2 years ago, to 14 years ago, to 60-70 years ago. 3 replicates were taken from each site. Furthermore, each site had its own respective control, from which 3 replicates were also taken. Chemical analysis of the amount of phosphorus present in the soil samples will be done using the Hedley method of phosphorus fractionation. The Hedley method is a method of phosphorus fractionation that is done by sequentially adding stronger reagents to remove various forms of occluded, non-occluded, labile, and resistant forms of phosphorus.
 The results of this project are still unknown, as much lab work has yet to be completed. However, I expect phosphorus fractions results to vary between the different sites. This is significant as human disturbances and interference may cause accelerated permafrost thaw in the High Arctic, furthering altering ecosystems.

Enduring legacy of coal mining on the fungal community in a High Arctic soil after five decades

Mineral extraction is known to affect soil fungi in polar environments, but it is unknown how long these effects persist. Here, by amplifying the internal transcribed spacer regions of rRNA genes in soil fungi, we compared soil fungal community in intact natural tundra with that in a nearby former coal mining area, abandoned 52 years previously, on Svalbard in the High Arctic. Compared with those in intact tundra, soils in the former mining area were more acidic and had lower plant coverage. Despite of similar diversity in the two areas, the fungal community was dominated by Basidiomycota in the intact tundra, but by Ascomycota in the former mining area. Ectomycorrhizal genera formed a major part of the tundra community, but were notably less abundant in the mining area. The principal variation among samples was soil pH. Surprisingly, network connectivity analysis indicated that the fungal community in the former mining area had greater network connectivity than that in the tundra area. Overall, the ecosystem in the former mining area has made only limited recovery towards the natural tundra state even after more than five decades. It is unclear whether the recovery of the fungal community is limited more by the low primary productivity, slow migration of fungi and plants, or slow changes in soil parameters. Our findings emphasize the susceptibility of polar ecosystems to disturbance, given their particularly slow recovery back towards the natural state.

The silent carbon pool: Cryoturbic enriched organic matter in Canadian High Arctic semi-deserts

High Arctic soil organic carbon (SOC) is an important component in the global C cycle, yet there is considerable uncertainty in the estimates for the polar deserts and semi-deserts that dominate these regions. Some of this uncertainty in SOC estimates arises from the cryoturbic processes including diapirism that structure polar desert soils. Diapirism occurs when the top, viscous layer of permafrost is deformed during freezing and ejected upwards into the soil profile forming a distinct diapiric soil patch or diapir. The diapiric is often nutrient rich relative to the surrounding soil; plants seek out and forage for nutrients in these patches creating a localized mixture of old carbon ejected from the permafrost and new carbon. Here we investigate how the subsurface SOC-rich patches in frost boils resulting from diapirism contribute to overall SOC storage in these environments. We quantify the rates of diapirism and fine-scale distribution of SOC in 560 frost boils at two Canadian high Arctic polar desert sites differing in parent material (dolomite versus granitic) with strikingly different plant surface communities. Though total soil organic carbon content did not differ between the dolomite and granite polar semi-deserts, SOC was being stored differently. The dolomitic site had greater SOC content below 10 cm reflecting the more common occurrence of subsurface SOC patches (46% of frost boils) compared to the granitic site (30%). When a subsurface patch of SOCC (SOC expressed on a m−2 basis) was present in a frost boil the boil contained nearly double the SOCC compared to frost boils without subsurface patches (11 ± 6.3 kg SOC m−2 compared to 6.4 ± 3.6 kg SOC m−2). Diapirism occurs in only 35% of all frost boils, but these diapiric patches represent an important, yet heterogenous, pool of SOC in polar semi-deserts. We upscale from these data to generate an improved estimate of SOC stored in the active layer of High Arctic polar semi-deserts of 8.14 ± 0.45 Pg SOC.

Pengzhenrongella sicca gen. nov., sp. nov., a new member of suborder Micrococcineae isolated from High Arctic tundra soil.

A yellow bacterial strain, designated LRZ-2T, was isolated from High Arctic tundra near the settlement Ny-Ålesund in the Svalbard Archipelago, Norway. The cells were Gram-stain-positive, aerobic and non-sporulating. Phylogenetic analysis based on 16S rRNA gene sequence comparisons revealed that strain LRZ-2T represented a novel member of the suborder Micrococcineae. Its nearest phylogenetic neighbours were the members of the genus Luteimicrobium, with 16S rRNA gene sequence similarity of 95.3-96.9 %. The average nucleotide identity and digital DNA-DNA hybridization values between the genomes of strain LRZ-2T and its closely related strains were 77.4-74.3 % and 21.4-19.6 %, respectively. The DNA G+C content was 72.4 mol%. The peptidoglycan type of the isolate was A4β with an interpeptide bridge comprising l-ornithine and d-glutamic acid. The predominant menaquinone was MK-9 (H4) and the major fatty acids were anteiso-C15 : 0, C16 : 0, anteiso-C15 : 1 A, anteiso-C17 : 0 and iso-C15 : 0. The polar lipids were diphosphatidylglycerol, phosphatidylinositol, phosphatidylinositol mannoside, phosphatidylinositol dimannoside, unidentified phosphoglycolipid, four unidentified phospholipids and two unidentified polar lipids. Strain LRZ-2T showed a 16S rRNA gene signature pattern consisting of nucleotides at positions 120 (A), 131-231 (C-G), 196 (C), 342-347 (C-G), 444-490 (A-U), 580-761 (C-G), 602-636 (C-G), 670-736 (A-U), 822-878 (G-C), 823-877 (G-C), 826-874 (C-G), 827 (U), 843 (C), 950-1231 (U-A), 1047-1210 (G-C), 1109 (C), 1145 (G), 1309-1328 (G-C), 1361 (G) and 1383 (C), which clearly distinguished it from all genera previously reported in the suborder Micrococcineae. On the basis of the phylogenetic, phenotypic and chemotaxonomic data, strain LRZ-2T is considered to represent a novel species of a new genus, for which the name Pengzhenrongella sicca gen. nov., sp. nov. is proposed. The type strain of Pengzhenrongella sicca is LRZ-2T (=CCTCC AB 2012163T=DSM 100332T).

Temporal Variations Rather than Long-Term Warming Control Extracellular Enzyme Activities and Microbial Community Structures in the High Arctic Soil

In Arctic soils, warming accelerates decomposition of organic matter and increases emission of greenhouse gases (GHGs), contributing to a positive feedback to climate change. Although microorganisms play a key role in the processes between decomposition of organic matter and GHGs emission, the effects of warming on temporal responses of microbial activity are still elusive. In this study, treatments of warming and precipitation were conducted from 2012 to 2018 in Cambridge Bay, Canada. Soils of organic and mineral layers were collected monthly from June to September in 2018 and analyzed for extracellular enzyme activities and bacterial community structures. The activity of hydrolases was the highest in June and decreased thereafter over summer in both organic and mineral layers. Bacterial community structures changed gradually over summer, and the responses were distinct depending on soil layers and environmental factors; water content and soil temperature affected the shift of bacterial community structures in both layers, whereas bacterial abundance, dissolved organic carbon, and inorganic nitrogen did so in the organic layer only. The activity of hydrolases and bacterial community structures did not differ significantly among treatments but among months. Our results demonstrate that temporal variations may control extracellular enzyme activities and microbial community structure rather than the small effect of warming over a long period in high Arctic soil. Although the effects of the treatments on microbial activity were minor, our study provides insight that microbial activity may increase due to an increase in carbon availability, if the growing season is prolonged in the Arctic.

Microbial carbon use and associated changes in microbial community structure in high-Arctic tundra soils under elevated temperature

In the high-Arctic, increased temperature results in permafrost thawing and increased primary production. This fresh plant-derived material is predicted to prime microbial consortia for degradation of the organic matter stored in tundra soils. However, the effects of warming and plant input on the microbial community structure is hardly known. We assessed the use of glycine, a readily available C and N source, and cellulose, a long C-biopolymer, by prokaryotic and fungal communities using DNA-SIP in tundra soils incubated at 8 °C or 16 °C. Glycine addition contributed mainly to instantaneous microbial carbon use and priming of soil organic matter decomposition, particularly under elevated temperature. By contrast, cellulose was linked to the dominant and active microbial communities, with potential carbon stabilization in soils. Our findings stress the importance of the type of plant-derived material in relation to microbial metabolism in high-Arctic soils and their consequences for the carbon cycle in response to global warming.

Potential Rhodopsin- and Bacteriochlorophyll-Based Dual Phototrophy in a High Arctic Glacier.

Conserving additional energy from sunlight through bacteriochlorophyll (BChl)-based reaction center or proton-pumping rhodopsin is a highly successful life strategy in environmental bacteria. BChl and rhodopsin-based systems display contrasting characteristics in the size of coding operon, cost of biosynthesis, ease of expression control, and efficiency of energy production. This raises an intriguing question of whether a single bacterium has evolved the ability to perform these two types of phototrophy complementarily according to energy needs and environmental conditions. Here, we report four Tardiphaga sp. strains (Alphaproteobacteria) of monophyletic origin isolated from a high Arctic glacier in northeast Greenland (81.566° N, 16.363° W) that are at different evolutionary stages concerning phototrophy. Their >99.8% identical genomes contain footprints of horizontal operon transfer (HOT) of the complete gene clusters encoding BChl- and xanthorhodopsin (XR)-based dual phototrophy. Two strains possess only a complete XR operon, while the other two strains have both a photosynthesis gene cluster and an XR operon in their genomes. All XR operons are heavily surrounded by mobile genetic elements and are located close to a tRNA gene, strongly signaling that a HOT event of the XR operon has occurred recently. Mining public genome databases and our high Arctic glacial and soil metagenomes revealed that phylogenetically diverse bacteria have the metabolic potential of performing BChl- and rhodopsin-based dual phototrophy. Our data provide new insights on how bacteria cope with the harsh and energy-deficient environment in surface glacier, possibly by maximizing the capability of exploiting solar energy.IMPORTANCE Over the course of evolution for billions of years, bacteria that are capable of light-driven energy production have occupied every corner of surface Earth where sunlight can reach. Only two general biological systems have evolved in bacteria to be capable of net energy conservation via light harvesting: one is based on the pigment of (bacterio-)chlorophyll and the other is based on proton-pumping rhodopsin. There is emerging genomic evidence that these two rather different systems can coexist in a single bacterium to take advantage of their contrasting characteristics in the number of genes involved, biosynthesis cost, ease of expression control, and efficiency of energy production and thus enhance the capability of exploiting solar energy. Our data provide the first clear-cut evidence that such dual phototrophy potentially exists in glacial bacteria. Further public genome mining suggests this understudied dual phototrophic mechanism is possibly more common than our data alone suggested.

Strong shifts in microbial community structure are associated with increased litter input rather than temperature in High Arctic soils

Rising temperatures in the Arctic and the expansion of plants to higher latitudes will significantly alter belowground microbial communities and their activity. Given that microbial communities are major producers of greenhouse gases, understanding the magnitude of microbial responses to warming and increased carbon input to Arctic soils is necessary to improve global climate change models. In this study, active layer and permafrost soils from northern Greenland (81° N) were subjected to increased carbon input, in the form of plant litter, and temperature increase, using a combined field and laboratory approach. In the field experiment, unamended or litter-amended soils were transplanted from the permafrost layer to the top soil layer and incubated for one year, whereas in the laboratory experiment active layer and permafrost soils with or without litter amendment were incubated at 4 °C or 15 °C for six weeks. Soil microbial communities were evaluated using bacterial 16S and fungal ITS amplicon sequencing and respiration was used as a measure of microbial activity. Litter amendment resulted in similar changes in microbial abundances, diversities and structure of microbial communities, in the field and lab experiments. These changes in microbial communities were likely due to a strong increase in fast-growing bacterial copiotrophic taxa and basidiomycete yeasts. Furthermore, respiration was significantly higher with litter input for both active layer and permafrost soil and with both approaches. Temperature alone had only a small effect on microbial communities, with the exception of the field-incubated permafrost soils, where we observed a shift towards oligotrophic taxa, specifically for bacteria. These results demonstrate that alterations in High Arctic mineral soils may result in predictable shifts in the soil microbiome.

Natural attenuation of spilled crude oil by cold-adapted soil bacterial communities at a decommissioned High Arctic oil well site

Romulus C-42 is a decommissioned oil well on Ellesmere Island in the Canadian High Arctic, and is the northernmost well to have produced oil and gas anywhere in the world. The remote site has been untouched since a crude oil spill in 1972, offering a rare opportunity to examine natural attenuation in Arctic soils >40 years after a pollution event. Bacterial community composition in crude oil contaminated soils was significantly different from adjacent background soils. Two members of the genus Rhodanobacter (Alphaproteobacteria) were found consistently in contaminated soils, whereas two members of the genus Sphingomonas (Gammaproteobacteria) appeared opposite to each other, one consistently within the oil contaminated soil and the other consistently in non-oil contaminated soils. GC of soil hydrocarbon extracts revealed moderate levels of biodegradation relative to the original oil produced in 1972. Despite conditions permissive for bacterial activity (>0 °C) being limited to only a few months each year, natural attenuation by cold adapted soil microbial communities has taken place since the oil spill over 40 years ago. Rhodanobacter and Sphingomonas lineages are associated with contaminated and baseline conditions in this extreme environment, revealing the utility of bacterial diversity measurements for assessing long-term responses of Arctic soils to pollution. Originality-significance statementRomulus C-42, the northernmost onshore drilling well in the world, was decommissioned following a small crude oil spill in 1972. Soil bacterial diversity profiles obtained >40 years later revealed significant differences in oil contaminated soils relative to adjacent non-oil contaminated background soils, consistent with evidence for moderate biodegradation of spilled crude oil having taken place since 1972. The results indicate that microbial diversity profiling is an effective tool for assessing natural attenuation in remote High Arctic soils with a history of oil pollution.

Effects of freeze-thaw cycles on High Arctic soil bacterial communities

The projected increase in freeze-thaw frequency associated with warmer temperatures in the High Arctic could affect the dynamics of soil bacterial communities. We report here the effects of freeze-thaw (FT) cycles on High Arctic bacterial communities of soil samples collected from three sites with different depths of snow cover. Analysis of 16S rRNA gene amplicon sequences showed that bacterial diversity in soil sampled under high snow cover were significantly different from those under low snow cover and those with no snow cover, and showed little change in community diversity after nine consecutive FT cycles. Conversely, bacterial diversity in soil samples under low and with no snow cover decreased after the simulated FT cycles. It is therefore likely that reduced snow cover will influence soil bacterial community structure through an increased frequency of freeze-thaw cycling.

Understanding drivers of antibiotic resistance genes in High Arctic soil ecosystems

Soils in tropical and temperate locations are known to be a sink for the genetic potential of anthropogenic-driven acquired antibiotic resistance (AR). In contrast, accumulation of acquired AR is less probable in most Polar soils, providing a platform for characterizing background resistance and establishing a benchmark for assessing AR spread. Here, high-throughput qPCR and geochemistry were used to quantify the abundance and diversity of both antibiotic resistance genes (ARGs) and selected mobile genetic elements (MGEs) across eight soil clusters in the Kongsfjorden region of Svalbard in the High Arctic. Relative ARG levels ranged by over two orders of magnitude (10−6 to 10−4 copies/16S rRNA gene copy), and showed a gradient of potential human and wildlife impacts across clusters as evidenced by altered geochemical conditions and increased “foreign” ARG abundances (i.e., allochthonous), including blaNDM-1. Impacted clusters exhibited 100× higher total ARGs and MGEs in tandem with elevated secondary nutrients, especially available P that is typically low and limiting in Arctic soils. In contrast, ARGs in less-impacted clusters correlated strongly to local soil lithology. The most plausible source of exogenous P and allochthonous ARGs in this region is bird and other wildlife guano, disseminated either by local human wastes or via direct carriage and deposition. Regardless of pathway, accumulation of apparent allochthonous ARGs and MGEs in High Arctic soils is concerning, highlighting the importance of characterizing Arctic sites now to establish benchmarks for tracking AR spread around the world.

Dead or Alive; or Does It Really Matter? Level of Congruency Between Trophic Modes in Total and Active Fungal Communities in High Arctic Soil.

Describing dynamics of belowground organisms, such as fungi, can be challenging. Results of studies based on environmental DNA (eDNA) may be biased as the template does not discriminate between metabolically active cells and dead biomass. We analyzed ribosomal DNA (rDNA) and ribosomal RNA (rRNA) coextracted from 48 soil samples collected from a manipulated snow depth experiment in two distinct vegetation types in Svalbard, in the High Arctic. Our main goal was to compare if the rDNA and rRNA metabarcoding templates produced congruent results that would lead to consistent ecological interpretation. Data derived from both rDNA and rRNA clustered according to vegetation types. Different sets of environmental variables explained the community composition based on the metabarcoding template. rDNA and rRNA-derived community composition of symbiotrophs and saprotrophs, unlike pathotrophs, clustered together in a similar way as when the community composition was analyzed using all OTUs in the study. Mean OTU richness was higher for rRNA, especially in symbiotrophs. The metabarcoding template was more important than vegetation type in explaining differences in richness. The proportion of symbiotrophic, saprotrophic and functionally unassigned reads differed between rDNA and rRNA, but showed similar trends. There was no evidence for increased snow depth influence on fungal community composition or richness. Our findings suggest that template choice may be especially important for estimating biodiversity, such as richness and relative abundances, especially in Helotiales and Agaricales, but not for inferring community composition. Differences in study results originating from rDNA or rRNA may directly impact the ecological conclusions of one’s study, which could potentially lead to false conclusions on the dynamics of microbial communities in a rapidly changing Arctic.

Effects of Field Warming on a High Arctic Soil Bacterial Community:A Metagenomic Analysis

Effects of Field Warming on a High Arctic Soil Bacterial Community:A Metagenomic Analysis

Clumped isotope constraints on equilibrium carbonate formation and kinetic isotope effects in freezing soils

The clumped and stable isotope (Δ47, δ18O, and δ13C) composition of pedogenic (soil) carbonates from cold, arid environments may be a valuable paleoclimate archive for climate change-sensitive areas at high latitudes or elevations. However, previous work suggests that the isotopic composition of cold-climate soil carbonates is susceptible to kinetic isotope effects (KIE). To evaluate the conditions under which KIE occur in cold-climate soil carbonates, we examine the Δ47, δ18O, and δ13C composition of soil carbonate pendants from Antarctica (Dry Valleys, 77°S), the High Arctic (Svalbard 79°N), the Chilean and Argentinian Andes, and the Tibetan plateau (3800–4800 m), and compare the results to local climate and water δ18O records. At each site we calculate the expected equilibrium soil carbonate Δ47 and δ18O values and estimate carbonate Δ47 and δ18O anomalies (observed Δ47 or δ18O minus the expected equilibrium Δ47 or δ18O). Additionally, we compare the measured carbonate δ13C to the expected range of equilibrium soil carbonate δ13C values. To provide context for interpreting the Δ47 and δ18O anomalies, the soil carbonate results are compared to results for sub-glacial carbonates from two different sites, which exhibit large Δ47 anomalies (up to −0.29‰). The Antarctic and 4700 masl Chilean Andes samples have negative Δ47 anomalies and positive δ18O anomalies consistent with KIE due to rapid bicarbonate dehydration during cryogenic carbonate formation. In contrast, the lower elevation Chilean Andes, Argentinian Andes, Tibetan Plateau and High Arctic results are consistent with equilibrium, summer carbonate formation. We attribute the differences in Δ47 and δ18O anomalies to variations in inter-cobble matrix grain size and its effects on the effective soil pore space, permeability (hydraulic conductivity), moisture, and bicarbonate dehydration rate. The Antarctic and 4700 masl Chilean Andean soils have coarse-grained matrices that facilitate rapid bicarbonate dehydration. In contrast, the lower elevation Chilean Andes, Argentinian Andes, High Arctic and Tibetan Plateau soils have finer-grained matrices that decrease the soil pore space, soil permeability and CO2 gas flux, promoting equilibrium carbonate formation. The sub-glacial carbonate samples yield highly variable Δ47 and δ18O anomalies, and we propose that the differences between the two glacier sites may be due to variations in local sub-glacial drainage conditions, pCO2, and pH. Our findings suggest that carbonates from soils with coarse-grained matrices may exhibit KIE in cold climates, making them poor paleoclimate proxies. Soils with fine-grained matrices are more likely to yield equilibrium carbonates suitable for paleoclimate reconstructions regardless of climate. Paleosol matrix grain size should therefore be taken into account in the evaluation of carbonate stable and clumped isotope values in paleoclimate studies.

8. Temperature Dependence of Carbon Dioxide, Nitrous Oxide and Methane Exchange in High Arctic Mineral Soils: Implications for Feedbacks to a Warming

Plant communities in the high Arctic are distributed according to moisture gradients. If moisture regimes change in response to future climate change, the distribution of plant communities is also likely to change. An understanding of how interactions between vegetation community type and changes in temperature and moisture levels will impact the flux of nitrous oxide, methane and carbon dioxide in arctic soils is critical for predicting potential positive feedback to climate warming. My research quantifies the flux of these greenhouse gases from mineral soils collected from three different plant community types at Cape Bounty, Nunavut: wet sedge, mesic heath, and polar desert. Intact soil cores (0‐10 cm) were collected during July of 2008, then sealed and refrigerated for transportation back to Kingston. The cores were incubated at 4°C, 8°C, and 12°C, including a three week pre‐incubation to ensure the cores were completely equilibrated to their respective temperature. My results suggest a significant temperature dependency for production of each of the greenhouse gases, with enhanced output in the characteristically wetter sites. The response to temperature (Q10) does not; however, appear to be consistent across the different plant communities. Further field studies were conducted to determine the impact of these vegetative community types on observed soil temperature. My results demonstrate a tendency toward warmer temperatures and enhanced diurnal fluctuations at drier sites. These initial results suggest that in a warmer climate, high Arctic soils have the potential to contribute to a positive feedback to climate change through the efflux of these gases.29