Hierarchical Agglomerative Cluster Analysis Research Articles

Phenotypes and outcomes in patients with atrial fibrillation: a global unsupervised cluster analysis from Phase II/III of the GLORIA-AF registry

Abstract Background Atrial fibrillation (AF) patients are characterized by a great clinical heterogeneity and complexity across the world. Usual classifications may not adequately characterize this population. Data-driven cluster analysis reveals different possible classifications of patients. Purpose To identify different clusters of AF patients who share similar clinical phenotypes and evaluate the association between identified clusters and clinical outcomes using cluster analysis. Methods An agglomerative hierarchical cluster analysis was performed in patients from phase II/III of the GLORIA-AF registry. Associations between clusters and a composite outcome composed of all-cause death, stroke and major bleeding were evaluated using Cox regression analyses. Results The study included 26,045 AF patients (mean±SD age 70.1±10; 44.8% female) with a median [IQR] follow-up of 3 years [2.3-3.1]. Five clusters were identified: Cluster 1 was composed of young males from North America with morbid obesity and cardiovascular (CV) risk factors; Cluster 2 included older Asian patients with lower body mass index (BMI), fewer CV risk factors, lower anticoagulation rate but the highest AF ablation rate; Cluster 3 identified European males with CV comorbidities and behavioral disorders (smoking, alcohol abuse); Cluster 4 was characterized by patients with the highest rate of permanent AF, cancer, anticoagulant therapy prescription ; Cluster 5 included older women from Europe with high CHA2DS2-VASc and HAS-BLED scores, the highest heart rate, lower BMI and high rate of previous stroke and transient ischemic attack. The incidence of the composite outcome increased a stepwise fashion among clusters from 3.2% patient-years (95% confidence interval (CI): 2.4-4.1) for Cluster 1 to 6% patient-years (95% CI: 5.6-6.4) for Cluster 5 (p<0.0001): Cluster 1 versus 2 hazard ratio (HR): 0.85 (95% CI 0.65–1.11); 2 versus 3 HR: 0.84 (95% CI 0.76–0.93); 3 versus 4 HR: 0.9 (95% CI 0.82–0.99) and 4 versus 5 HR: 0.82 (95% CI 0.74–0.91). Conclusion Cluster analysis identified five statistically-driven groups of AF patients, with distinct phenotype characteristics and associated with different risks for major clinical adverse events.Baseline characteristics.Dendrogram and Kaplan Meier-curves.

Sexual and preventive behaviors associated with HAV, HBV, and HPV vaccine hesitancy among men who have sex with men in France

ABSTRACT Vaccination coverage against hepatitis A virus (HAV), hepatitis B virus (HBV), and human papillomaviruses (HPV) is insufficient among men who have sex with men (MSM), partly because of their high prevalence of vaccine hesitancy (VH) specific to these vaccines. This study aimed to investigate determinants of specific VH in MSM, focusing on characteristics of their sexual activity, propensity to use prevention tools and medical care, disclosure of sexual orientation to health care professionals (HCPs), and perceived stigmatization. A cross-sectional electronic survey (February – August 2022) collected perceptions of HBV, HAV, and HPV, and of their respective vaccines among 3,730 French MSM and enabled the construction of a specific VH variable. Using agglomerative hierarchical cluster analysis, we constructed a typology of MSM sexual and prevention practices. We identified three MSM clusters (low- (C1, 24%), moderate- (C2, 41%), and high- (C3, 35%) “sexual activity/medical engagement”) that showed an increasing gradient in the use of medical prevention with regular medical care and exposure to high-risk sexual practices. A multiple ordinal logistic regression showed that overall specific VH was higher in the C1 cluster and in men who had not informed their physician of their sexual orientation. This typology could usefully help to adapt vaccination communication strategies for MSM prevention program according to patients’ profiles. HCPs should be encouraged and trained to ask men about their sexual practices and to provide appropriate vaccination recommendations nonjudgmentally.

Chemical composition and antioxidant activity of Tagetes filifolia Lag. essential oil from Peruvian Andes

The chemical composition of the essential oil from the aerial parts (leaves and flowers) of Tagetes filifolia Lag. grown in the Peruvian Andes was examined throughout the gas chromatography and gas chromatography-mass spectrometry techniques. Fifty-seven compounds were identified representing more than 99% of the essential oil. Phenylpropanoids had the major percentage, including (E)-anethol (85.0%) and estragole (12.9%) as the most abundant compounds. A multivariate analysis was performed using hierarchical cluster analysis to examine the relationship between the studied sample and other T. filifolia specimens from 21 essential oil compositions reported in the literature. Agglomerative hierarchical cluster analysis reveals three groups: (E)-anethole/estragole, estragole/(E)-anethole and an outlier (Z)-anethole/estragole. In addition, antioxidant activity was evaluated using 1,1-diphenyl-2-picryl-hydrazyl and ferric reducing antioxidant power assays. The essential oil had a moderate scavenging effect and ferric reducing capacity.

In-vitro induced drought and heat stress on seed germination of diverse African sorghum germplasm

Abstract One of the critical growth and development stages that is vulnerable to drought and heat stress even in hardy staple crops is germination. Sorghum is a critically essential, resilient, and diverse crop that displays genotypic variations in its ability to withstand such harsh conditions, limiting crop stand and ultimately leading to yield losses. Therefore, the goal of this study was to evaluate the performance of 50 high potential genotypes of African sorghum, including landraces, breeding lines and check varieties to simulated drought and heat stress at germination stage. The study used a split plot arrangement for temperature treatments, laid in a completely randomized design with three replications. Final germination percentage, mean germination time, germination index and coefficient variation of germination time (CVt) were determined. Data was subjected to generalized linear model, principal component analysis, hierarchical agglomerative cluster analysis and principal coordinate analysis to determine statistical differences in genotypes and visualize groups of genotypes according to their overall performance in assessed germination parameters. Drought stress and supra-optimal temperatures suppressed and delayed germination. The genotypes were grouped into six distinct clusters based on their performance. Genotypes NPGRC1593, NPGRC1782, NPGRC1476 and IS224426 performed exceptionally well under both stressors and outperformed check varieties in almost all parameters assessed. To improve crop establishment and increase agricultural yields, breeding and crop improvement programs should focus on genotypes that can withstand both stresses.

Endophenotypes of Primary Osteoarthritis of the Hip Joint in the Bulgarian Population over 60 Years Old.

Aim. To identify subgroups of patients with primary osteoarthritis of the hip joint (pHOA) with similar imaging and laboratory findings, disease evolution, and response to conventional therapies. Methods. We performed further statistical analyses on patient data from two published, double-blind, randomized, and placebo-controlled studies (DB-RCTs), which examined the effects of intra-articular corticosteroids (ia-CSs), hyaluronic acid (ia-HA)-KИ-109-3-0008/14.01.2014, and intravenous bisphosphonates (iv-BPs) -KИ- 109-3-0009/14.01.2014 compared to the country's standard pHOA therapy. The data span an 8-year follow-up of 700 patients with pHOA, including: 1. Clinical parameters (WOMAC-A, B, C, and T; PtGA). 2. Laboratory markers (serum calcium and phosphate levels; 25-OH-D and PTH, markers for bone sCTX-I and cartilage uCTX-II turnover). 3. Radiological indicators: X-ray stage (Kellgren-Lawrence (K/L) and model (Bombelli/OOARSI), width (mJSW), speed (JSN mm/year), and zone of maximum narrowing of the joint space (max-JSN)-determining the type of femoral head migration (FHM). 4. DXA indicators: bone geometry (HAL; NSA; and MNW); changes in regional and total bone mineral density (TH-BMD, LS-BMD, and TB-BMD). 5. Therapeutic responses (OARSI/MCII; mJSW; JSNmm/yearly) to different drug regimens (iv-BP -zoledronic acid (ZA/-5 mg/yearly for 3 years)); ia-CS 40 mg methylprednisolone acetate, twice every 6 months; and ia-HA with intermediate molecular weight (20 mg/2 mL × 3 weekly applications, two courses every 6 months) were compared to standard of care therapy (Standard of Care/SC/), namely D3-supplementation according to serum levels (20-120 ng/mL; target level of 60 ng/mL), simple analgesics (paracetamol, up to 2.0 g/24 h), and physical exercises. The abovementioned data were integrated into a non-supervised hierarchical agglomerative clustering analysis (NHACA) using Ward's linkage method and the squared Euclidean distance to identify different endophenotypes (EFs). Univariate and multivariate multinomial logistic regression analyses were performed to determine the impact of sex and FHM on clinical and radiographic regression of pHOA. Results. A baseline cluster analysis using incoming (M0) patient data identified three EFs: hypertrophic H-HOA, atrophic A-HOA, and intermediate I-HOA. These EFs had characteristics that were similar to those of patients grouped by radiographic stage and pattern ('H'-RPs, 'I'-RPs, and 'A'-RPs), p < 0.05). The repeated cluster analysis of M36 data identified four EF pHOAs: 1. Hypertrophic (slow progressors, the influence of the type of femoral head migration (FHM) outweighing the influence of sex on progression), progressing to planned total hip replacement (THR) within 5 (K/LIII) to 10 (K/LII) years. 2. Intermediate (sex is more important than the FHM type for progression) with two subgroups: 2#: male-associated (slow progressors), THR within 4 (K/LIII) to 8 years. (K/LII). 2* Female-associated (rapid progressors), THR within 3 (K/LIII) to 5 (K/LII) years. 3. Atrophic (rapid progressors; the influence of FHM type outweighs that of sex), THR within 2 (K/LIII) to 4 (K/LII) years. Each EF, in addition to the patient's individual progression rate, was also associated with a different response to the aforementioned therapies. Conclusions. Clinical endophenotyping provides guidance for a personalized approach in patients with pHOA, simultaneously assisting the creation of homogeneous patient groups necessary for conducting modern genetic and therapeutic scientific studies.

Variability of Silver Fir Needle (Abies alba Mill.) Anatomical Features in the Southeast Europe Natural Populations.

The survival of marginal/peripheral silver fir (Abies alba Mill.) populations in the broader region of Southeast Europe is endangered due to climate change and population decline. This study aimed to determine the level and pattern of variability for the anatomical traits of needles and the possibility of linking the pattern of phenotypic variability with environmental factors. In most of the analyzed needle traits, the statistically significant variability between populations was determined. According to the results of the multivariate principal component analysis, it is evident that the populations are distinct from each other, in three groups. The climatic factors Hargreaves reference evaporation, mean annual temperature, and growing degree-days, were statistically significantly correlated. The altitude and heating degree-days are statistically significantly correlated with the following three environmental factors: Hargreaves reference evaporation, mean annual temperature and growing degree-days, but negatively with others. The paper's findings indicate significant moderate and high correlations between the anatomical traits of the needles' central bundle diameter with the resin duct diameter, the distance between the vascular bundle and the resin duct and the epidermis thickness with cuticle, the resin duct diameter with the distance between the vascular bundle and the resin duct and the epidermis thickness with cuticle, as well as the distance between the vascular bundle and the resin duct with the hypodermis height and the epidermis thickness with cuticle. The results of agglomerative hierarchical clustering analysis, performed for anatomical and climatic traits, confirmed the existence of three groups of tested populations according to the altitude gradient. Research results provide knowledge on the diversity and structure of Abies alba populations of Southeast Europe, important for further research and guidelines for the species' conservation and genetic variability preservation in the southern marginal distribution area and keeping in line with climate change projections.

Effects of banqueting on water infiltration and physico-chemical properties of soil in semi-arid lands

Banqueting is a simple and cheap soil conservation practice in natural rangelands under dry climates. Little research exists about its impacts compared to other land uses, where agriculture and land abandonment may be important reasons for degradation. This study has evaluated water infiltration and key physico-chemical properties of soil in natural rangelands with banquets in West Azerbaijan (North-Western Iran) compared to: (i) undisturbed sites (assumed as reference condition) and (ii) cultivated or abandoned dry farmlands. Under these soil conditions, the texture, bulk density, porosity, water content, pH, electrical conductivity, organic carbon and carbonate contents of soil (using common physical-chemical methods) as well as the hydraulic conductivity (using a single-cylinder infiltrometer) were measured in the topsoil (0–20 cm). This data was further processed by applying the Principal Component Analysis and the Agglomerative Hierarchical Cluster Analysis. In areas with banquets, soil hydraulic conductivity was higher by 84% compared to dry farmlands (abandoned or not), where water infiltration was noticeably reduced (−44%) compared to the reference soil condition. Moreover, a noticeable increase in organic carbon content (+80%) and a lower salinity (−36%) of soil compared to cultivated areas was measured. These effects are important to enhance soil fertility on one side, and resistance to erosion on the other side. Therefore, in the experimental areas, banqueting may counteract the degradation of soil due to the agricultural activity as well as its abandonment, and restore the properties of the undisturbed soils that are typical of natural rangelands. The results of this study may be of help for landscape managers and agronomists for the pressing needs for soil conservation and productivity in semi-arid areas that are prone to degradation and abandonment.

Impacts of flow regime characterization on selected water quality parameters in Mthatha River catchment

Abstract The effects of altered streamflow types on selected water quality parameters provide useful knowledge and information for prompt water pollution management. This study assesses the impacts of inter- and intra-year seasonal variability in streamflow types on selected water quality parameters. The study uses percentiles, multivariance correlation, and agglomerative hierarchical clustering analysis (AHC) in XLSTAT statistics software to achieve the study aim. Historical dataset for streamflow, rainfall, and selected water quality parameters between 2012 and 2020 for the Mthatha River catchment (MRC), Eastern Cape, South Africa were used to characterize the different seasonal variability impacts with the selected water quality parameters at both the upper and lower reach of the river. The result of the inter and intra-year seasonal variability analyses show that the catchment's flow magnitude varies between 2.0 and 2.7 m3/s in summer while the results of the nonlinear polynomial relationship between the grouped streamflow regime show a coefficient of correlation (R2) values of 0.4264 and 0.5643, suggesting that a mild alteration occurs in the catchment. Decision-makers would find the study useful in controlling the pollutant effluent discharge into the river at different times and maintaining standard effluent requirements as mitigation strategies for sustaining the river ecosystem.

Wetland vegetation composition and ecology of Lake Abaya in southern Ethiopia.

Wetland vegetation and ecology of Lake Abaya in the southern Ethiopia was studied to determine floristic composition, plant community type and vegetation ecology. A total of 102 plots were laid along transects that were set up preferentially across areas where there were rapid changes in vegetation or marked environmental gradients to collect data on estimate of percentage aerial cover of plant species and environmental variables. Vegetation data was analyzed by agglomerative hierarchical cluster analysis using similarity ratio as a resemblance index and Ward's linkage method. Multivariate data analysis was performed using appropriate packages in R version 2.14.0. Canonical Correspondence Analysis (CCA) was used to explore the relationship between the species composition and environmental variables. The environmental data included in the CCA were determined using stepwise backward and forward selection of variables by ANOVA test. Statistical measurement regarding species diversity, richness and evenness of the plant community types was carried out by using Shannon-Wiener diversity indices. A total of 92 plant species belonging to 66 genera and 34 families were identified. Families Poaceae, Asteraceae, Fabaceae, Cyperaceae, Solanaceae, Euphorbiaceae and Amaranthaceae account for about 56.99% of the total proportion. Based on the cluster analysis, five plant community types were identified. The most important factors influencing the plant species composition and pattern of wetland plant communities were water drainage, water depth, land use, slope, altitude, and hydrogeomorphology. Therefore, these factors should be considered in future management and protection under the circumstance of climate change and human activities.

Data-driven subtypes of mixed semantic-logopenic primary progressive aphasia: Linguistic features, biomarker profiles and brain metabolic patterns

Mixed primary progressive aphasia (mPPA) accounts for a substantial proportion of primary progressive aphasia (PPA) cases. However, the lack of a standardised definition of this condition has resulted in misclassification of PPA cases. In this study, we enrolled 55 patients diagnosed with PPA, comprising 12 semantic variant (svPPA), 23 logopenic variant (lvPPA), and 20 mPPA cases with linguistic characteristics consistent with both svPPA and lvPPA (s/lvPPA). All patients underwent language assessments, evaluation of Alzheimer's disease biomarkers (via cerebrospinal fluid analysis or Amyloid-PET), and 18F-FDG-PET brain scans. An agglomerative hierarchical clustering (AHC) analysis based on linguistic characteristics revealed two distinct clusters within the s/lvPPA group: cluster k1 (n = 10) displayed an AD-like biomarker profile, with lower levels of Aβ42 and Aβ42/Aβ40 ratio, along with higher levels of t-tau and p-tau compared to cluster k2 (n = 10). Interestingly, k1 exhibited linguistic features that were similar to those of svPPA. Both clusters exhibited extensive temporoparietal hypometabolism. These findings support the hypothesis that a subgroup of s/lvPPA may represent a clinical manifestation of AD-related PPA.

Changes in wetland landscape and inundation patterns in the middle and lower reaches of the Yangtze River Basin from 1990 to 2020

Wetlands are crucial to diverse societies and ecosystems but are threatened globally. Natural wetlands in the middle and lower reaches of the Yangtze River Basin (MLRYRB) have long been exploited to meet the increasing food and energy demands, especially in recent decades. However, how their landscapes and hydrological patterns changed over time was poorly qualified, which was crucial to conserving biodiversity and ecosystems. In this study, we proposed a new wetland classification procedure taking advantage of the shape, topography, landscape patterns, and phenology to map the distribution of six wetland types in the MLRYRB in 1990 and 2020 with Landsat images. The transitions among different wetland types and associated driving factors were examined. Artificial wetlands expanded by 3907.6 km2 while natural wetlands decreased by 423.2 km2, resulting in a net area increase of 3484.4 km2. Farmland reclamations, aquacultural activities, urban expansion, and dam constructions induced 70 % of the area's loss of natural wetlands. Meanwhile, spatiotemporal patterns in wetland inundation dynamics were determined with agglomerative hierarchical cluster analysis. Widespread transitions from perennial water to seasonal wetlands were detected. Notably, 47.8 % of the natural wetlands experienced significant drying trends, and as a result, the mean yearly inundated periods for natural wetlands decreased from 303 days in 1990 to 272 days in 2020. Given the substantial structural alterations, wetland destruction was more severe than the area reflected. Our results suggested that category-based changes in wetland areas, inundation patterns, associated driving forces, and underlying ecological consequences should be comprehensively assessed to conduct scientific conservation and prevent “paper offsets.”

Effects of different plant parts and solvents on bioactive compounds and antioxidation in large fruit Bird’s eye chili (Capsicum annuum L. cv. Superhot)

The production chain is impacted by an overabundance of large fruit Bird’s eye chili (Capsicum annuum L. cv. Superhot) on the market. Another way to make the most of the potential of raw materials for product development is to supplement the data on phytochemicals and antioxidative activity by segmentation (fruit, placenta, seed, and pericarp). In an experiment, distilled water, 60% ethanol and 90% ethanol were used as the primary solvents. The outcomes demonstrated that placenta and seeds using 90% ethanol as a solvent (PS-Et90) contained capsaicin, total phenolics, and total flavonoids at their most outstanding levels (16.30 µg/mg, 44.65 µg GAE/mg, and 21.77 µg CE/mg, respectively). At the same time, the Scoville Heat Unit was high at 244,550 SHU (very high pungency). Additionally, it demonstrated the highest antioxidative activity (129.57 µg TE/mg) when tested with the ABTS method, and total flavonoids were discovered to enhance the antioxidation effect when measured by ABTS and FRAP methods. PS-Et90 had a significantly different potency than the other groups when the extracts were grouped using Agglomerative Hierarchical Cluster Analysis based on phytochemical data and antioxidant activity. Therefore, the placenta and seeds appear to be preferable over others when utilizing large fruit Bird’s eye chili for pharmacological purposes. Using 90% ethanol as a solvent will provide the best bioavailability.

Frogs and flows: Using life‐history traits and a systematic review to establish water‐dependent functional groups for stream frogs in New South Wales, Australia

AbstractHydrological alteration has contributed to the global decline of stream frogs. Flows support stream frog reproduction, juvenile development, food resources, and maintain habitats for all life stages. At present, there is a lack of information regarding the specific water requirements necessary for the conservation of stream frogs. To address this gap, we developed a traits‐based approach that serves as a valuable tool for grouping and prioritising water‐dependent stream frog species to inform future research priorities and environmental flow design. In this study, we focussed on 53 Australian frog species and analysed eight species traits to develop water‐dependent functional groups for stream frogs. We classified frogs based on their level of water dependency using an agglomerative hierarchical clustering analysis and a systematic review of water requirements and water management threats. The distinguishing traits that determined functional groups were: tadpole body type, egg clutch type, stream breeding habitat type, and documented association with flowing water and water permanence. Our study identified two distinct water‐dependent groups: facultative stream spawners, capable of reproducing in both stream and non‐stream habitats, and obligate stream spawners, restricted solely to stream habitats. Importantly, we highlight that the obligate stream spawners are the most sensitive group to within‐channel flow alteration and should be prioritised for water management decisions in lotic environments. This study represents the first comprehensive overview of the importance of hydrology for stream frogs and identifies the critical need for additional research and validation to enhance our understanding of stream frog responses to flows regimes.

Chemical profiles of essential oils of two cultivars of Melaleuca cajuputi leaves and flowers

In the present study, the differences between the chemical compositions of the essential oils obtained from the leaves and flowers of two cultivars of M. cajuputi collected from Moc Hoa district, Long An province. By using Gas Chromatography-Mass Spectrometry, a total of 105 components have been identified in the essential oils of four samples of two M. cajuputi cultivars such as “Tràm gió” leaves, “Tràm gió” flowers, “Tràm cừ” leaves and “Tràm cừ” flowers. The Agglomerative Hierarchical Cluster (AHC) and Principal Component Analysis (PCA) were performed to show the similarities/dissimilarities in chemical compositions among the four studied samples. As a result, the components of the essential oils of four studied samples were divided into two clusters. Cluster I included two samples such as “Tràm gió” leaf and “Tràm gió” flower with high presence of 1,8-cineole (35.12 and 17.69%), linalool (3.31 and 5.03%), (R)-α-terpinyl acetate (9.17 and 8.1%). Cluster II comprised “Tràm cừ” leaf and “Tràm cừ” flower with the high concentration of α-pinene (9.87 and 12.19%), γ-terpinene (10.48 and 11.3%), p-mentha-2,4(8)-diene (8.8 and 12.7%).

Root Architectural Adaptations to Phosphorus Deficiency: Unraveling Genotypic Variability in Wheat Seedlings

Understanding the changes in the root system architecture of bread wheat under phosphorus (P)-limited conditions is critical for identifying specific traits contributing to improved P uptake. Phenotypic variability in root, biomass, and P index-related traits among 204 diverse wheat genotypes at the seedling stage was examined under low and optimum P treatments. Strong genotypic and phenotypic associations between P utilization efficiency (PUtE) and total root volume, dry weight of root and shoot, total P uptake, and total plant biomass were observed under optimum P. Under low P, strong positive correlations between PUtE and total root length, total root volume, total surface area, and total biomass were observed, while it was negatively correlated with average diameter. These traits exhibited medium to high heritability. Under low P, average root diameter, primary root length, root mass ratio, total root tips, and surface area showed high Shannon–Weaver diversity index (H’) values (&gt;0.79). The agglomerative hierarchical clustering analysis grouped the genotypes into four distinct clusters. The best performing genotypes in Clusters I and II indicated their strong relationship with P use efficiency due to higher percent increases in total root length, total surface area, total root volume, total root tips, total biomass, P efficiency ratio, specific root length, and PUtE under low P as compared to optimum P conditions. The present study identified specific root system architectural traits and P use-efficient genotypes (SHANGHAI, Pavon F76, BWL 5233, SONALIKA, KHARCHIA LOCAL, WH 102, BWL 4425, HD 2888.2, CBW 12, MN75136/PGO, KRL 19, and WH 1022) associated with efficient P uptake and utilization. These identified genotypes and traits may be useful in wheat breeding programs to develop P-efficient varieties with better adaptations for sustainable agriculture.

Understanding COVID-19 vaccine hesitancy in Meghalaya, India: Multiple correspondence and agglomerative hierarchical cluster analyses.

Meghalaya, a state in the northeastern region of India, had a markedly low vaccine uptake compared to the other states in the country when COVID-19 vaccines were being rolled out in 2021. This study aimed to characterize the distinct vaccine-hesitant subpopulations in healthcare and community settings in Meghalaya state in the early days of the vaccination program. We used data from a cross-sectional survey that was administered to 200 healthcare workers (HCWs) and 200 community members, who were a priori identified as 'vaccine-eligible' and 'vaccine-hesitant,' in Shillong city, Meghalaya, in May 2021. The questionnaire collected information on participants' sociodemographic characteristics, COVID-19 history, and presence of medical comorbidities. Participants were also asked to provide a dichotomous answer to a set of 19 questions, probing the reasons for their hesitancy towards COVID-19 vaccines. A multiple correspondence analysis, followed by an agglomerative hierarchical cluster analysis, was performed to identify the distinct clusters of vaccine-hesitant participants. We identified seven clusters: indecisive HCWs (n = 71), HCWs skeptical of COVID-19 and COVID-19 vaccines (n = 128), highly educated male tribal/clan leaders concerned about infertility and future pregnancies (n = 14), less educated adults influenced by leaders and family (n = 47), older adults worried about vaccine safety (n = 76), middle-aged adults without young children (n = 56), and highly educated ethnic/religious minorities with misinformation (n = 8). Across all the clusters, perceived logistical challenges associated with receiving the vaccine was identified as a common factor contributing to vaccine hesitancy. Our study findings provide valuable insights for local and state health authorities to effectively target distinct subgroups of vaccine-hesitant populations with tailored health messaging, and also call for a comprehensive approach to address the common drivers of vaccine hesitancy in communities with low vaccination rates.

Comprehensive Assessment of Morphological Diversity in Bottle Gourd (Lagenaria siceraria) Accessions: A Focus on Roots and Morpho-Agronomic Traits

Phenotypic characterization of the variability present within bottle gourd has been limited to morpho-agronomic traits, and this evaluation is a prerequisite for a bottle gourd breeding program. Despite playing an important role in the phenotypic variation in plants, the root system has limited use in studies of morphological diversity. Thus, the objective of this study was to characterize the morphological diversity present in bottle gourd accessions of different countries based on roots and morpho-agronomic traits. The magnitude of morphological diversity and divergence among nineteen bottle gourd accessions that represent nine different countries of origin were evaluated with analysis of variance, principal component analysis, and an agglomerative hierarchical clustering (AHC) analysis. ANOVA for morpho-agronomic and root traits revealed significant morphological effects among the accessions, suggesting substantial differences among the bottle gourd accessions. The nineteen accessions were grouped into three clusters, and while these were not grouped according to the country of origin, clear differences among the roots and flowering traits were observed between the L. siceraria var. hispida with L. siceraria var. siceraria accessions, which were confirmed with the AHC analysis, revealing the divergence between these varieties and the opportunities for rootstock breeding programs.

Developing the procedure-enhanced model of ginger-infused sesame oil based on its flavor and functional properties

Ginger-infused sesame oil enriches the nutrition and provides enhanced flavor for the foods. An original processing procedure and module for evaluation were established in this study, using different raw materials (Guangdong and Chu ginger) and treatments (ginger powder, extract, and both). The quality, functionality, and flavor of the infused oils were evaluated. Ginger-infused sesame oil contained 0.58–3.22 µg/g of 6-gingerol, 0.21–0.88 µg/g of 6-shogaol. The number range of volatile compounds from 48 to 55 identified by gas chromatography-mass spectrometry varies depending on different process procedures. Agglomerative hierarchical clustering analysis revealed the flavor profiles were clustered by different varieties, while gingerol and phytosterol was by different treatments. In conclusion, sesame oil was an appropriate carrier for gingerol and phytosterol, which are characterized by higher antioxidant capacities (p < 0.05). These results show the benefits of developing infused oil products with enhanced functional and sensory properties.

Alternative Approach to the Segmentation of Fishing Fleets

The appropriate segmentation of fishing fleets is controversially discussed in fisheries research and management and a variety of approaches has been introduced. The present approach, developed in a pilot study funded by the European Commission – Data Collection Framework (DCF), introduces a standardized multivariate approach for characterizing fisheries fleet segments by hierarchical agglomerative cluster analysis (HAC) of their catch composition. We chose data from 2021 of the Romanian fishing fleet as the basis of our analysis. Statistical analyses were performed using the program RStudio V3.6.1 by running the fleet segmentation package script. The specific indices, tests, and visual validation methods of the package were applied to determine the optimal number of clusters. The procedure was finalized by a post-hoc validation of the clustering result to identify the actual fleet segments. From the basic data, 6 fleet segments for Vessels using active and passive gears (PMP) were highlighted, representing 52 boats, where it was noted that fishing at Rapa whelk (RPW) prevailed with 91.94% of the total catches on the segment, respective 5 fleet segments for Vessels using passive gears (PG) only for vessels 12m, representing 78 vessels where the main catches or recorded at European anchovy (ANE) 25.16%, turbot (TUR) 13.08%, horse mackerel (HMM) 8.75%, thus 130 vessels from two classes of different gears in total. We detected mied fishing, especially on various assemblages of demersal and pelagic fish, as well as target fishing on demersal and pelagic fish, Rapa whelk, and mussels. For a better understanding of the approach, further research is needed.

Evaluating total nitrogen and phosphorous concentrations in a watershed impacted by diverse anthropic activities in a developing country.

This research aims to identify critical contamination points by nutrients, their possible origin (point and nonpoint sources), their spatial distribution, and possible attenuation by natural and anthropogenic processes. The study area is the Velhas River Basin, located in the Southeast Region of Brazil (17.0°-20.5° S; 43.5°-45.0°W). A historical series of water quality monitoring, land cover map, demographic and agricultural censuses, sewage treatment diagnostics, and local hydrographic networks were used to achieve the objectives. In addition, the regions were divided into incremental areas, enabling individualized analyses of each sub-basin. Descriptive statistics, seasonality, categorized data tests, agglomerative hierarchical cluster analysis, and principal component analysis were used. There was a significant contribution of nutrients in the most important urban agglomeration of the basin, resulting in peak concentrations measured at that place. Although the values were reduced by the mouth (650 km), the percentage of legislation violations remained high. The effects of punctual contamination were intensified by the low percentage of treated sewage in the basin, the absence of adequate treatment technologies to remove nutrients, and the disorderly urbanization. Furthermore, it was estimated that the nutrient load from animal husbandry is approximately 75% of the load from domestic effluents due to the high number of cattle in the basin and the low percentage of forests.