Harsh Habitats Research Articles

Collapse of an insular bird species driven by a decrease in rainfall

Arid island environments harbour a unique biota characterised to have adaptive features that enable them to thrive in such harsh habitats. However, our understanding of how anthropogenic climate change compromises the biodiversity and sustainability of these ecosystems is greatly unknown. Here we used fine-grained field data to evaluate the effects of extreme weather on the population size, distribution, and habitat preferences of an endemic bird species inhabiting an arid Atlantic island, across two temporal windows spanning approximately 20 years (2005–2024). Population size declined sharply (63 %–70 %) between periods, according to a distance-based sampling design and a habitat suitability modelling approach, with the number of individuals estimated in 2024 being 4650 (CI 95 %: 3600–5950) and 4150 (CI 95 %: 3600–4800) respectively. The density of this species in 2024 was reduced by approximately three times compared to the previous study period. The results revealed that in 2024 a larger island area (246 km2 and 514 km2) was necessary to encompass 50 % and 75 % of all individuals of this species, respectively, compared to the previous period (195 km2 and 434 km2). Such a population collapse was associated with the decrease in rainfall on the island, which is closely related to the reproductive success in this species. We recorded a pattern of continuous decrease in rainfall since 2005–2006, which included several extremely dry years immediately before the 2024 study. We also found strong evidence for the population decline of other native bird species of the same foraging guild. Overall, our data emphasizes the significance of recurrent and extreme climatic events on arid island bird species in driving population declines and reducing their distribution ranges; and highlights how fragile such unique taxa can be under longer dry periods, with uncertain consequences for their future viability.

Scrutinizing harsh habitats endophytic fungi and their prospective effect on water-stressed maize seedlings.

Drought constitutes a significant abiotic stressor that hinders plant growth and productivity in many countries. Habitat-adapted endophytic fungi offer an environmentally sustainable approach to address this issue by promoting plant development and enhancing resilience against abiotic stresses. In this study, 30 endophytic fungal isolates were recovered from some wild plants in the extreme habitats of Port Said Governorate, Egypt, and evaluated for their drought tolerance using polyethylene glycol (PEG-6000). Only eight isolates demonstrated drought tolerance properties and were further evaluated for their plant growth-promoting biochemical activities and ability to improve maize germination under simulated drought conditions. All eight isolates exhibited enzyme activity for endo-1,4-β-glucanase, amylase, and pectinase, and most displayed significant nutrient mobilization, with siderophores production ranging from 4 to 89%, ammonia production from 1 to 7μmol/ml, and phosphate solubilization from 129to 256µg/ml. Additionally, all isolates showed strong antioxidant activity and high total phenolic content, with some also producing notable levels of indole acetic acid (IAA) and gibberellic acid (GA3) as plant growth hormones. Coating maize grains with spore suspensions of the eight fungal isolates, in general, significantly increased their germination parameters and seedling vigor in vitro under 8% PEG-6000. This enhancement was particularly pronounced with Neurospora sitophila (P8L4M1) and Penicillium tardochrysogenum (P15L4M1), which increased the vigor of maize seedlings by approximately 308% compared to untreated control. Molecular identification of P8L4M1 and P15L4M1 was performed by amplifying the 28S rRNA gene. This study disclosed unique endophytic fungal isolates with promising potential for enhancing drought resistance in maize.

Mitogenome of a new Ramazzottius species (Tardigrada: Eutardigrada: Ramazzottiidae) discovered in rock pools along with its temperature and desiccation-related proteins repertoire

AbstractRamazzottius is a widespread genus of tardigrades with extreme cryptobiotic capabilities. Thanks to its ability to survive desiccation and freezing, this genus is usually recorded from harsh habitats such as exposed mosses and lichens and rock pools. In the last years, research focused on both describing Ramazzottius diversity and revealing the molecular mechanisms behind their cryptobiotic capabilities. Despite the research efforts in these fields, much still remains to be discovered. Here we describe a new Ramazzottius species from an Italian rock pool by means of integrative taxonomy (morphology, morphometry, and DNA sequencing) and sequenced its genome with Nanopore technology to provide an assembled mitogenome and annotate its Temperature and Desiccation Resistance Proteins (TDPR) repertoire. The new gonochoric species is phylogenetically close to the parthenogenetic R. varieornatus, a strain of which (YOKOZUNA-1) has been adopted as model organism for the study of cryptobiosis. The mitogenome of the new species shows perfect synteny with R. varieornatus and shares with it most of the TDPR genes. The relative genetic similarity of the new species to the model R. varieornatus, combined with unique biological traits (for example the difference in reproductive mode and the unique habitat it colonizes), makes the new species a potential new addition to the range of model tardigrade species.

Interplay of heavy metal accumulation, physiological responses, and microbiome dynamics in lichens: insights and future directions.

Lichens are increasingly recognised as valuable bioindicators for environmental heavy metal pollution due to their sensitivity to spatial and temporal variations in pollution levels and their ability to adapt to diverse and often harsh habitats. This review initially examines the mechanisms of metal absorption in lichens, including particulate entrapment, ion exchange, and intracellular absorption, as well as their physiological responses to abiotic stressors such as heavy metal exposure and desiccation. In the latter part, we compile and synthesise evidence showing that secondary metabolites in lichens are significantly influenced by metal concentrations, with varying impacts across different species. Although extensive research has addressed the broader physiological effects of heavy metal hyperaccumulation in lichens, there remains a significant gap in understanding the direct or indirect influences of heavy metals on the lichen microbiome, possibly mediated by changes in secondary metabolite production. Our review integrates these aspects to propose new research directions aimed at elucidating the mechanisms underlying physiological responses such as resilience and adaptability in lichens. Overall, this review highlights the dynamic interplay between microbiome composition, secondary metabolite variation, and metal accumulation, suggesting that these factors collectively contribute to the physiological responses of lichens in polluted environments.

Regulation of drought stress on nutrient cycle and metabolism of rhizosphere microorganisms in desert riparian forest

Microbial communities in desert riparian forest ecosystems have developed unique adaptive strategies to thrive in harsh habitats shaped by prolonged exposure to abiotic stressors. However, the influence of drought stress on the functional and metabolic characteristics of soil rhizosphere microorganisms remains unknown. Therefore, this study aimed to investigate the effects of drought stress on soil biogeochemistry and metabolism and analyze the relationship between the biogeochemical cycle processes and network of differentially-expressed metabolites. Using metagenomics and metabolomics, this study explored the microbial functional cycle and differential metabolic pathways within desert riparian forests. The predominant biogeochemical cycles in the study area were the Carbon and Nitrogen cycles, comprising 78.90 % of C, N, Phosphorus, Sulfur and Iron cycles. Drought led to increased soil C fixation, reduced C degradation and methane metabolism, weakened denitrification, and decreased N fixation. Furthermore, drought can disrupt iron homeostasis and reduce its absorption. The differential metabolic pathways of drought stress include flavonoid biosynthesis, arachidonic acid metabolism, steroid hormone biosynthesis, and starch and sucrose degradation. Network analysis of functional genes and metabolism revealed a pronounced competitive relationship between the C cycle and metabolic network, whereas the Fe cycle and metabolic network promoted each other, optimizing resource utilization. Partial least squares analysis revealed that drought hindered the expression and metabolic processes and functional genes, whereas the rhizosphere environment facilitated metabolic expression and the functional genes. The rhizosphere effect primarily promoted metabolic processes indirectly through soil enzyme activities. The integrated multi-omics analysis further revealed that the effects of drought and the rhizosphere play a predominant role in shaping soil functional potential and the accumulation of metabolites. These insights deepen our comprehension of desert riparian forest ecosystems and offer strong support for the functionality of nutrient cycling and metabolite dynamics.

Comparative analysis of prokaryotic microbiomes in high-altitude active layer soils: insights from Ladakh and global analogues using In-Silico approaches.

The active layer is the portion of soil overlaying the permafrost that freezes and thaws seasonally. It is a harsh habitat in which a varied and vigorous microbial population thrives. The high-altitude active layer soil in northern India is a unique and important cryo-ecosystem. However, its microbiology remains largely unexplored. It represents a unique reservoir for microbial communities with adaptability to harsh environmental conditions. In the Changthang region of Ladakh, the Tsokar area is a high-altitude permafrost-affected area situated in the southern part of Ladakh, at a height of 4530m above sea level. Results of the comparison study with the QTP, Himalayan, Alaskan, Russian, Canadian and Polar active layers showed that the alpha diversity was significantly higher in the Ladakh and QTP active layers as the environmental condition of both the sites were similar. Moreover, the sampling site in the Ladakh region was in a thawing condition at the time of sampling which possibly provided nutrients and access to alternative nitrogen and carbon sources to the microorganisms thriving in it. Analysis of the samples suggested that the geochemical parameters and environmental conditions shape the microbial alpha diversity and community composition. Further analysis revealed that the cold-adapted methanogens were present in the Ladakh, Himalayan, Polar and Alaskan samples and absent in QTP, Russian and Canadian active layer samples. These methanogens could produce methane at slow rates in the active layer soils that could increase the atmospheric temperature owing to climate change.

Multi-Trophic Species Diversity Contributes to the Restoration of Soil Multifunctionality in Degraded Karst Forests through Cascading Effects

The biodiversity–ecosystem function (BEF) relationship is the basis for studying the restoration of degraded ecosystems, and the simultaneous assessment of multi-trophic-level biodiversity and ecosystem multifunctionality relationship is more conducive to unravelling the restoration mechanism of degraded ecosystems, especially for degraded forest ecosystems with harsh habitats and infertile soils such as karst. In this study, we evaluated the biodiversity and soil multifunctionality (SMF) of degraded karst forests (scrub, SB; secondary growth forests, SG; old-growth forests, OG) in the Maolan National Nature Reserve, China, using 30 sample plots. Biodiversity and soil multifunctionality (SMF) at three trophic levels (plant–soil fauna–soil microorganisms), were assessed through vegetation surveys and soil sampling. One-way ANOVA showed that SMF increased with natural restoration, but multi-trophic level biodiversity showed different trends. Pearson’s correlation analysis showed a positive correlation between plant species diversity and SMF (p < 0.001), whereas soil fauna and soil microorganisms were negatively correlated with SMF. Structural equation modeling revealed a cascading effect of the multi-trophic level on the stimulation of the SMF during restoration. Only soil microorganisms exhibited a direct driving effect on SMF (p < 0.001), whereas plants indirectly influenced soil microorganisms through soil fauna, which subsequently affected the SMF. Although we observed the negative effects of increased plant diversity on soil fauna and soil microbial diversity in terms of quantitative relationships, the increase in soil fauna species and the evenness of soil microbial function still contributed to SMF restoration. This study revealed the cascading effects of multi-trophic diversity in promoting SMF restoration and emphasized that soil microbes are key to unraveling restoration mechanisms and processes, whereas soil fauna is an important intermediate link.

Rare and common species contribute disproportionately to alpine meadow community construction and functional variation.

It is widely accepted that rare species are the first species to become extinct after human-induced disturbances. However, the functional importance of rare species still needs to be better understood, especially in alpine meadow communities with harsher habitats, where the extinction rate of rare species may be higher. This study established a 1.85 × 105 m2 permanent research sample plot on the eastern Tibetan Plateau. We investigated data from 162 plots at 6 different sampling scales in alpine meadows to determine the contribution of rare and common species to alpine meadow communities' structural and functional variability. The results showed that (1) Asteraceae (Compositae) was the dominant family in the surveyed localities. The trends of species diversity indices were the same, and all of them increased with the increase of sampling scale, and the plant community showed apparent scale effects. (2) The community construction of rare species at small scales with high occupancy transitioned from neutral processes to ecological niche processes, while the community construction of common species at different sampling scales was all dominated by ecological niche processes. (3) The trait values of rare species at different sampling scales were different from those of common species, and their distribution in FEs (functional entities) was also different, indicating that they contributed differently to the ecological functions of the communities. Rare species with lower abundance in the surveyed communities had a higher proportion of FEs, indicating that rare species had a more significant proportion of contribution to FEs. The functional redundancy (FR) of rare species was lower than that of common species, and the functional vulnerability (FV) was higher than that of common species. Therefore, the loss of rare species is more likely to cause the loss of community ecological functions, affecting the function and resilience of alpine meadow ecosystems.

Structure characterization and cryoprotective activity of an exopolysaccharide from Pseudoalteromonas sp. LP6-12-2

Non-toxic natural antifreeze agents are urgently needed in many fields. Exopolysaccharides produced by psychrophilic bacteria from harsh habitats, such as Antarctica, to battle cold environments are a significant source of biological antifreeze agents. In this study, a homogeneous exopolysaccharide (EPS0-1) was extracted from Antarctica Pseudoalteromonas sp. LP6-12-2. Using High-performance gel permeation chromatography and High-efficiency anion chromatogram, respectively, the homogeneity, molecular weight, and monosaccharide composition of EPS0-1 were examined. EPS0-1 with a molecular weight (Mw) of 4351.31 kDa was an α-configuration polysaccharide containing uronic acid, amino and sulfuric acid groups, and composed of galactosamine hydrochloride, rhamnose, glucosamine hydrochloride, galactose, glucose, mannose, galacturonic acid, and glucuronic acid with rates of 1.40:9.40:4.90:32.0:37.2:6.50:4.10:4.40, respectively. Congo red test and I2-KI reaction found that the triple helix structure of EPS0-1 polysaccharide chain was weakly bound internally, with a longer side chain and/or more branches. The smooth and dense surface of EPS0-1 under Atomic force microscopy and Scanning electron microscopy revealed that it was large polysaccharide particles. Freeze-thaw cycle and freezing point determination experiment showed that EPS0-1 may significantly increase E. Coli's freezing resistance and decrease the solution's freezing point, respectively. EPS0-1 was capable of increasing the viscosity of the solution and displaying a high degree of thermal stability, which was proved by the rheological properties. And it was not hazardous to human normal liver cell line (LO2) in a specific concentration range. Therefore, the findings of this investigation established the basis for EPS0-1 as a potential antifreeze and food functional component.

Antimicrobial Potential of Different Isolates of Chaetomium globosum Combined with Liquid Chromatography Tandem Mass Spectrometry Chemical Profiling.

The antimicrobial resistance of pathogenic microorganisms against commercial drugs has become a major problem worldwide. This study is the first of its kind to be carried out in Egypt to produce antimicrobial pharmaceuticals from isolated native taxa of the fungal Chaetomium, followed by a chemical investigation of the existing bioactive metabolites. Here, of the 155 clinical specimens in total, 100 pathogenic microbial isolates were found to be multi-drug resistant (MDR) bacteria. The Chaetomium isolates were recovered from different soil samples, and wild host plants collected from Egypt showed strong inhibitory activity against MDR isolates. Chaetomium isolates displayed broad-spectrum antimicrobial activity against C. albicans, Gram-positive, and Gram-negative bacteria, with inhibition zones of 11.3 to 25.6 mm, 10.4 to 26.0 mm, and 10.5 to 26.5 mm, respectively. As a consecutive result, the minimum inhibitory concentration (MIC) values of Chaetomium isolates ranged from 3.9 to 62.5 µg/mL. Liquid chromatography combined with tandem mass spectrometry (LC-MS/MS) analysis was performed for selected Chaetomium isolates with the most promising antimicrobial potential against MDR bacteria. The LC-MS/MS analysis of Chaetomium species isolated from cultivated soil at Assuit Governate, Upper Egypt (3), and the host plant Zygophyllum album grown in Wadi El-Arbaein, Saint Katherine, South Sinai (5), revealed the presence of alkaloids as the predominant bioactive metabolites. Most detected bioactive metabolites previously displayed antimicrobial activity, confirming the antibacterial potential of selected isolates. Therefore, the Chaetomium isolates recovered from harsh habitats in Egypt are rich sources of antimicrobial metabolites, which will be a possible solution to the multi-drug resistant bacteria tragedy.

Importance of Self-built Temporary Spaces, Between Traditional and Transitory Architecture: The Saharawi Wilayat in the Algerian Desert

In an increasingly complex world of climate-related crises, migrations, and forced displacements, the study of spontaneous and temporary self-built settlements in harsh habitats may be of value to the architectural debate. The analysis of the Saharawi camps in the Algerian desert presented here identifies recurrent typological patterns in both domestic and common spaces. The aim of this paper is to analyze these settlements as a structural form of habitation, framing them within the discourse of traditional architecture, while recognizing aspects of ephemerality and emergency provision. The method used was a spatial classification of housing units and settlements in order to identify recurring typological patterns. Our results demonstrate the presence of such patterns and show that, even in precarious and developing situations, principles of traditional architecture apply. By encouraging these practices, we may improve the living conditions of those inhabiting temporary contexts, while also favoring practices that are more sustainable for the environment.

Fertile Island Soils Promote the Restoration of Shrub Patches in Burned Areas in Arid Saline Land

Shrub encroachment and expansion have been widely reported globally and are particularly severe in arid saline land. Shrubs in harsh habitats have fertile island effects, but the promoting effect of fertile island soil on shrub patch restoration remains unclear. To clarify the role of fertile island soils in shrub patch recovery, we took single Tamarix ramosissima shrubs with different volume sizes (3.62–80.21 m3) as experimental subjects. The fertile island effect was quantified, and the 5-year natural recovery of shrub patches in the burned area was measured. The results strongly support that shrubs formed a fertile island soil in unburned areas; soil nutrient content beneath the canopy was 1.34–3.09 times higher than those outside the shrubs, while the soil salinity was 0.03–0.48 times lower than that of intercanopy spaces. The diversity of herbaceous plants beneath shrubs was significantly lower than that of outside shrubs, while the herbage biomass first increased and then decreased with the increase in the volume of shrubs. The maximum biomass of herbage was found when the shrub volume was 30.22 m3, but oversized shrubs could inhibit the growth of herbage. In terms of burned area, the recovery of burned area mainly depends on resprouts and seedlings. The mean values of seedling density, height, coverage, and biomass beneath the canopies were 0.47, 2.53, 2.11, and 5.74 times higher, respectively, than those of the intercanopy spaces. The results of the structural equation models showed the weight coefficient of the fertile island soils for the vegetation recovery in burned shrubland was 0.45; low salinity contributed more to vegetation recovery than high nutrient and moisture contents. Thus, compared with intercanopy spaces, shrub patches reinforce fertile island effects through direct and indirect effects and enhance the recovery of shrubland vegetation in the burned area. Our results demonstrate the positive implications of shrub expansion in the context of global climate change and also deepen the understanding of the sustainable development of burned shrubland.

Deadly mushrooms of the genus Galerina found in Antarctica colonized the continent as early as the Pleistocene

Abstract Fungi are probably the most diverse group of eukaryotic organisms in the Antarctic continent and nearby archipelagos, and they dominate communities in either mild or harsh habitats. However, our knowledge of their global distribution ranges and the temporal origins of their Antarctic populations is rather limited or almost absent, especially for species that do not lichenize. We focused for the first time on elucidating the taxonomic identity and phylogenetic relationships of several Antarctic collections of the deadly fungal Basidiomycota genus Galerina. By using molecular sequence data from the universal fungal barcode and a dataset encompassing 178 specimens, the inferred phylogeny showed that the Antarctic specimens corresponded with the sub-cosmopolitan species Galerina marginata, Galerina badipes and Galerina fallax, and their most closely related intraspecific genetic lineages were from northern Europe and North America. We found that these species probably host Antarctic-endemic intraspecific lineages. Furthermore, our dating analyses indicated that their Antarctic populations originated in the Pleistocene, a temporal frame that agrees with that proposed for the Antarctic colonization of plants such as the grass Deschampsia antarctica, mosses and some amphitropical lichens. Altogether, these findings converge on the same temporal scenario for the assembly of the most conspicuous terrestrial Antarctic plant and fungal communities.

Plant economic strategies in two contrasting forests

BackgroundPredicting relationships between plant functional traits and environmental effects in their habitats is a central issue in terms of classic ecological theories. Yet, only weak correlation with functional trait composition of local plant communities may occur, implying that some essential information might be ignored. In this study, to address this uncertainty, the objective of the study is to test whether and how the consistency of trait relationships occurs by analyzing broad variation in eight traits related to leaf morphological structure, nutrition status and physiological activity, within a large number of plant species in two distinctive but comparable harsh habitats (high-cold alpine fir forest vs. north-cold boreal coniferous forest).ResultsThe contrasting and/or consistent relationships between leaf functional traits in the two distinctive climate regions were observed. Higher specific leaf area, photosynthetic rate, and photosynthetic nitrogen use efficiency (PNUE) with lower N concentration occurred in north-cold boreal forest rather than in high-cold alpine forest, indicating the acquisitive vs. conservative resource utilizing strategies in both habitats. The principal component analysis illuminated the divergent distributions of herb and xylophyta groups at both sites. Herbs tend to have a resource acquisition strategy, particularly in boreal forest. The structural equation modeling revealed that leaf density had an indirect effect on PNUE, primarily mediated by leaf structure and photosynthesis. Most of the traits were strongly correlated with each other, highlighting the coordination and/or trade-offs.ConclusionsWe can conclude that the variations in leaf functional traits in north-cold boreal forest were largely distributed in the resource-acquisitive strategy spectrum, a quick investment-return behavior; while those in the high-cold alpine forest tended to be mainly placed at the resource-conservative strategy end. The habitat specificity for the relationships between key functional traits could be a critical determinant of local plant communities. Therefore, elucidating plant economic spectrum derived from variation in major functional traits can provide a fundamental insight into how plants cope with ecological adaptation and evolutionary strategies under environmental changes, particularly in these specific habitats.

Back to the roots, desiccation and radiation resistances are ancestral characters in bdelloid rotifers

BackgroundBdelloid rotifers are micro-invertebrates distributed worldwide, from temperate latitudes to the most extreme areas of the planet like Antarctica or the Atacama Desert. They have colonized any habitat where liquid water is temporarily available, including terrestrial environments such as soils, mosses, and lichens, tolerating desiccation and other types of stress such as high doses of ionizing radiation (IR). It was hypothesized that bdelloid desiccation and radiation resistance may be attributed to their potential ability to repair DNA double-strand breaks (DSBs). Here, these properties are investigated and compared among nine bdelloid species collected from both mild and harsh habitats, addressing the correlation between the ability of bdelloid rotifers to survive desiccation and their capacity to repair massive DNA breakage in a phylogenetically explicit context. Our research includes both specimens isolated from habitats that experience frequent desiccation (at least 1 time per generation), and individuals sampled from habitats that rarely or never experienced desiccation.ResultsOur analysis reveals that DNA repair prevails in somatic cells of both desiccation-tolerant and desiccation-sensitive bdelloid species after exposure to X-ray radiation. Species belonging to both categories are able to withstand high doses of ionizing radiation, up to 1000 Gy, without experiencing any negative effects on their survival. However, the fertility of two desiccation-sensitive species, Rotaria macrura and Rotaria rotatoria, was more severely impacted by low doses of radiation than that of desiccation-resistant species. Surprisingly, the radioresistance of desiccation-resistant species is not related to features of their original habitat. Indeed, bdelloids isolated from Atacama Desert or Antarctica were not characterized by a higher radioresistance than species found in more temperate environments.ConclusionsTolerance to desiccation and radiation are supported as ancestral features of bdelloid rotifers, with a group of species of the genus Rotaria having lost this trait after colonizing permanent water habitats. Together, our results provide a comprehensive overview of the evolution of desiccation and radiation resistance among bdelloid rotifers.

Are Intermittent Rivers in the Karst Mediterranean Region of the Balkans Suitable as Mayfly Habitats?

Intermittent rivers, common in dry parts of the world, such as the Mediterranean region, are hydrologically harsh habitats characterized by periodical flow cessation. Ephemeroptera are aquatic insects common in both lotic and lentic waterbodies, where they show a high sensitivity to anthropogenic modifications of their habitat. Therefore, they are widely used as bio-indicators of the freshwater’s health. However, mayfly assemblages and their ecological requirements in the karst Mediterranean intermittent habitats are still not sufficiently known. Thus, the work presented here includes an analysis of mayfly assemblages and their relationship with environmental variables in the lotic phase of four intermittent rivers in the karst Mediterranean region of Croatia. Considering that the studied intermittent rivers are hydrologically extreme environments, a total of 12 recorded mayfly species could be considered as rather high species richness. Nevertheless, species richness per river was quite low (between three and six), and was highly influenced by river morphology, physico-chemical water properties (especially conductivity, water velocity, and concentrations of dissolved oxygen), and anthropogenic pressures. Our results could contribute to the mayfly species protection in karst Mediterranean intermittent freshwater habitats in the Balkans, as well as to the development of conservation measures for those threatened habitats.

Cyanobacteria: Their Biological Activities and Interesting Medical Applications: Review

Cyanobacteria possess secondary metabolites that can be used in the field of medicine through biotechnological applications. Recently, these microorganisms have gained more interest from scientists due to the production of bioactive compounds with applications in commercial and medical domains. Also, Cyanobacteria are a distinct class of oxygenic photosynthetic bacteria that live in a variety of settings around the globe. Many bioactive molecules derived from cyanobacteria exhibit a broad spectrum of activities, including antimicrobial, antibacterial, antiviral, antiinflammatory, antitumor, antimalarial, immunosuppressive, and anti-HIV (Human Immunodeficiency Virus) activities as well as protease inhibition, demonstrating their potential as a good source of new therapeutic lead compounds over the past two decades. Cyanobacteria are advantageous as a microbial source for drug development since they are easier to culture than other microorganisms and need only basic inorganic ingredients for growth. So, it appears that there is room for greater use of cyanobacteria in the drug development process. In addition, because of the wide variety of microbes present, cyanobacterial secondary metabolites may be a rich source of novel substances that can be used to create novel medications. However, a variety of problems with how the cyanophycean species are handled have made it difficult to exploit these species. Now that the majority of these issues have been handled, cyanobacteria may be able to increase the range of natural products derived from microbes. In contrast to other microbial sources of natural products, cyanobacteria have historically received less attention. This, combined with the enormous chemical diversity and biological activities of their products, has made them appealing sources of novel drugs for use in a variety of therapeutic fields. As a result, cyanobacterial strains from still uncharted and harsh habitats can make for excellent candidates in interdisciplinary research on the medicinal potential of cyanobacteria.

Sulfolobus islandicus Employs Orc1-2-Mediated DNA Damage Response in Defense against Infection by SSV2.

All living organisms have evolved DNA damage response (DDR) strategies in coping with threats to the integrity of their genome. In response to DNA damage, Sulfolobus islandicus activates its DDR network in which Orc1-2, an ortholog of the archaeal Orc1/Cdc6 superfamily proteins, plays a central regulatory role. Here, we show that pretreatment with UV irradiation reduced virus genome replication in S. islandicus infected with the fusellovirus SSV2. Like treatment with UV or the DNA-damaging agent 4-nitroquinoline-1-oxide (NQO), infection with SSV2 facilitated the expression of orc1-2 and significantly raised the cellular level of Orc1-2. The inhibitory effect of UV irradiation on the virus DNA level was no longer apparent in the infected culture of an S. islandicus orc1-2 deletion mutant strain. On the other hand, the overexpression of orc1-2 decreased virus genomic DNA by ~102-fold compared to that in the parent strain. Furthermore, as part of the Orc1-2-mediated DDR response genes for homologous recombination repair (HRR), cell aggregation and intercellular DNA transfer were upregulated, whereas genes for cell division were downregulated. However, the HRR pathway remained functional in host inhibition of SSV2 genome replication in the absence of UpsA, a subunit of pili essential for intercellular DNA transfer. In agreement with this finding, lack of the general transcriptional activator TFB3, which controls the expression of the ups genes, only moderately affected SSV2 genome replication. Our results demonstrate that infection of S. islandicus by SSV2 triggers the host DDR pathway that, in return, suppresses virus genome replication. IMPORTANCE Extremophiles thrive in harsh habitats and thus often face a daunting challenge to the integrity of their genome. How these organisms respond to virus infection when their genome is damaged remains unclear. We found that the thermophilic archaeon Sulfolobus islandicus became more inhibitory to genome replication of the virus SSV2 after preinfection UV irradiation than without the pretreatment. On the other hand, like treatment with UV or other DNA-damaging agents, infection of S. islandicus by SSV2 triggers the activation of Orc1-2-mediated DNA damage response, including the activation of homologous recombination repair, cell aggregation and DNA import, and the repression of cell division. The inhibitory effect of pretreatment with UV irradiation on SSV2 genome replication was no longer observed in an S. islandicus mutant lacking Orc1-2. Our results suggest that DNA damage response is employed by S. islandicus as a strategy to defend against virus infection.

Investigating the Assemblages of Two Groups of Collembola (Strong Furca and Weak Furca) under Different Agricultural Management Systems, Northeastern China

Agriculture itself has been considered one of the leading reasons for biodiversity loss because of the huge quantity of land dedicated to just this activity, and agricultural intensification has impacted soil organisms at several taxonomic levels. Soil biota is a vital component of the agricultural system, providing essential ecosystem services while also having synergistic impacts on crop yield. Preservation of their diversity becomes a major element of an agricultural sustainability strategy. Many studies focused on agricultural activities’ effects on soil organisms, but few of them have focused on their effects on the co-occurrence patterns of their communities. Collembola communities are frequently employed as a substitute for soil organisms; thus, as a surface-dwelling arthropods representative, we investigated assemblages of soil Collembola in reaction to the arrangement of 6 treatments varying in crop rotation (MC: monoculture (corn) vs. CS: corn–soybean rotation) and tillage types (MP: mould ploughing; RT: ridge tillage; and NT: no-tillage). We hypothesized that Collembola communities with strong furca would respond well to the agricultural practices than those with weak furca, and there would be strong co-occurrence between species of Collembola communities belonging to the treatments with less intensity of soil disturbance and more variation in crop rotation. Our study found no clear evidence of a beneficial effect of crop rotation on Collembola communities. Although Collembola with strong furca shows higher abundances in plots with mold plowing, weak furca abundances were not showing any difference (differences in abilities to move fast from harsh habitats could be the reason for different responses of these two groups). Network analysis revealed that Collembola assemblages seem to occur more responsive to tillage intensity than crop rotation. Network graphs of treatments with ridge tillage are significantly more clustered than all others. For the first time, we can show that assemblages of springtails in agriculture were distinguished by a pattern of co-occurrence alongside agricultural practices (crop rotation, soil tillage), showing variations in the disturbance of soil and soil nutrients. Our results, contrary to our expectations, demonstrated that the effects of agricultural activities on Collembola abundance and diversity could be weak after long-term application of the same treatment, but still, they will clearly affect the bonds between Collembola species by affecting their co-occurrence pattern in Collembola communities.

How do ectotherms perform in cold environments? Physiological and life-history traits in an Andean viviparous lizard

Both the mean and the variation in environmental temperature are increasing globally. Indeed, the predicted increases in temperature range from 2 to 4°C in the next 50 years. Ectotherms control body temperature by means of behavior selecting microsites with different temperatures, which makes them more susceptible to changes in climate. Nevertheless, lizards living in high mountain environments have developed several mechanisms to inhabit and colonize variable environments with extreme temperatures. These mechanisms include a high metabolism to be active at lower temperatures and viviparity to improve embryonic development. Despite behavioral thermoregulation acting as a buffer to changes in environmental temperature, other traits such as life-history traits may be less flexible. Consequently, in an attempt to understand how lizards cope with harsh habitats, we evaluated some physiological traits and responses of females of Liolaemus bellii from two contrasting slope sites with differences in environmental temperature and humidity, but at the same altitude in the southern Andes range. We collected pregnant females from opposite slopes and maintained them until parturition in a common-garden experiment. Females from the south-facing slope (S-slope) had higher preferred body temperature (Tpref) values before and after parturition and exhibited higher daily energy expenditure before parturition. Nevertheless, no difference in Tpref was shown by their offspring, suggesting a developmental plastic response or adaptation to lower environmental temperature. For instance, the higher metabolism during pregnancy could be associated with a shorter activity period on the snowy S-slope. Additionally, females from the S-slope had larger kidneys and gave birth later than N-slope females, likely due to developmental plasticity or genetic differentiation. How fixed these traits are, in individuals from the contrasting slopes, will determine the response capacity of the L. bellii population to climate change.