Gut Contents Research Articles

The Microbiota of the Outer Gut Mucus Layer of the Migrating Northeast Arctic Cod (Gadus morhua) as Determined by Shotgun DNA Sequencing

Animals form functional units with their microbial communities, termed metaorganisms. Despite extensive research on some model animals, microbial diversity in many species remains unexplored. Here, we describe the taxonomic profile of the microbes from the outer gut mucus layer from the Northeast Arctic cod using a shotgun DNA sequencing approach. We focused on the mucus to determine if its microbial composition differs from that of the fecal microbiota, which could reveal unique microbial interactions and functions. Metagenomes from six individuals were analyzed, revealing three different taxonomic profiles: Type I is dominated in numbers by Pseudomonadaceae (44%) and Xanthomonadaceae (13%), Type II by Vibrionaceae (65%), and Type III by Enterobacteriaceae (76%). This stands in sharp contrast to the bacterial diversity of the transient gut content (i.e., feces). Additionally, binning of assembled reads followed by phylogenomic analyses place a high-completeness bin of Type I within the Pseudomonas fluorescens group, Type II within the Photobacterium phosphoreum clade, and Type III within the Escherichia/Shigella group. In conclusion, we describe the adherent bacterial diversity in the Northeast Arctic cod’s intestine using shotgun sequencing, revealing different taxonomic profiles compared to the more homogenous transient microbiota. This suggests that the intestine contains two separate and distinct microbial populations.

The contribution of fish to the diet of loggerhead sea turtles in the western Mediterranean revisited

Early juvenile loggerhead turtles (Caretta caretta) rely on gelatinous zooplankton, whereas individuals larger than 40 cm curved carapace length are adapted to crush hard-shelled invertebrates. Nevertheless, fish were reported to be the staple food of loggerhead turtles in the western Mediterranean 30 years ago. Here, the temporal consistency of such a fish-based diet of loggerhead turtles is assessed through gut content analysis and stable isotope analysis of samples from the Mediterranean coast of Spain spanning three decades. The gut contents of 134 juvenile loggerhead turtles (curved carapace length range: 27–71 cm) from three different periods (1991, 1999–2008 and 2010–2017) were analyzed, as well as a subsample of the same turtles (n = 10 in each period) for both bulk and compound-specific stable isotope ratios (CSIA-AA). Gut content analysis revealed a decline in the frequency of occurrence and numerical abundance of fish and an increasing contribution of gastropods and bivalves throughout time, although pelagic tunicates were always the most frequently observed prey. The δ15Nbulk of turtle bone also dropped throughout the study period, but the values of the stable isotope ratio of N in phenylalanine (δ15NPhe) indicated that 52.5% of that variability was due to a baseline shift over time. Accordingly, the trophic position estimated from CSIA-AA did not follow the decreasing pattern of δ15Nbulk, but fluctuated throughout time. The overall evidence indicates that fish consumption by loggerhead turtles in the study region declined through time, but the trophic position of loggerhead turtles did not change simultaneously. This is probably because low trophic prey such pelagic tunicates and filter-feeding bivalves and suspension-feeding gastropods were the bulk of the diet during the whole study period and fish played a minor role, even when their frequency of occurrence peaked. Past levels of high fish consumption might be due to high levels of fishery discards, currently declining because of the recent reduction of the fishing fleet.

Viable Trypanosoma cruzi cultured from a dead Paratriatoma lecticularia (Hemiptera: Reduviidae) encountered in a large dog kennel environment in south Texas, USA.

Trypanosoma cruzi (Chagas, 1909) is a protozoan parasite transmitted by triatomine (Hemiptera: Reduviidae) insects and is the causative agent of Chagas disease. Oral transmission of the parasite occurs through consumption of contaminated food or infected triatomines and may depend on the degree to which T. cruzi survives in triatomine abdomens. Dead triatomines may be abundant in areas with insecticide use, such as dog kennels where animals may encounter them. We attempted to culture T. cruzi from the gut material of 108 triatomines collected near dog kennels-14 found alive and 94 found dead-and also tested for T. cruzi DNA and discrete typing units using PCR. In total, 30 (27.8%) tested positive for T. cruzi using PCR, 5 alive (35.7%) and 25 dead (26.6%), with no difference in infection between insects found alive versus dead (P-value = 0.53) and more PCR positives identified in dead triatomines with intact gut contents than in dead desiccated triatomines (P-value = 0.049). One Paratriatoma lecticularia (Stål, 1859) that was found dead (1.1%, n = 94) had T. cruzi growth in culture. Given the use of bleach for external decontamination of triatomines as well as the level of bacterial and fungal contamination of cultures, both of which may have impacted the growth of T. cruzi, the apparent prevalence of viable parasites in this study should be interpreted as a conservative estimate. Vector control initiatives should consider that dead insects may still pose a risk of T. cruzi transmission to animals and humans.

Functional Organisation, Predator-prey Interactions, and Gut Content Analysis for Selected Groups of Benthic Macroinvertebrates in High Elevation Ponds in St. Ann Parish, Jamaica

Functional Organisation, Predator-prey Interactions, and Gut Content Analysis for Selected Groups of Benthic Macroinvertebrates in High Elevation Ponds in St. Ann Parish, Jamaica

Functional Organisation, Predator-prey Interactions, and Gut Content Analysis for Selected Groups of Benthic Macroinvertebrates in High Elevation Ponds in St. Ann Parish, Jamaica

Functional Organisation, Predator-prey Interactions, and Gut Content Analysis for Selected Groups of Benthic Macroinvertebrates in High Elevation Ponds in St. Ann Parish, Jamaica

Growth and physiological responses of Nile tilapia, Oreochromis niloticus fed dietary fermented sugar beet bagasse and reared in biofloc system

Sugar beet bagasse (SB) is a common agro-industrial waste used in animal feeds. However, its high crude fiber content makes it difficult for fish to digest. Fermentation processes can improve the nutritional value of SB by-products. The study uses Lactobacillus rhamnosus and yeast (Saccharomyces cerevisiae) to ferment SB waste for use as a soybean meal substitute in Nile tilapia fingerlings. This led to an increase in protein, lipid, ash, and nitrogen-free extracts, while the fiber content decreased. Four experimental isonitrogenous (crude protein: 249.2 g kg−1) and isocaloric (gross energy:18.25 MJ kg−1) diets were formulated as follows: a control diet with 0 % LYFSB (L. rhamnosus and yeast fermented SB), and three other diets with LYFSB replacing soybean meal (SBM) at levels of 10 % (LYFSB10 %), 20 % (LYFSB20 %), and 30 % (LYFSB30 %) based on protein content, over a 70-day period. 180 fingerlings of Nile tilapia (average initial weight of 5.19 ± 0.02 g) were placed at random in twelve circular plastic tanks (60 L capacity) with a stocking density of fifteen fish each. Nitrite and ammonia levels decreased as the replacement levels of LYFSB in tilapia diets increased, while nitrate levels showed the opposite trend. The phytoplankton community includes nine species in the biofloc system and four in tilapia gut content, with Chlorophyceae being the most common class, having the highest number in fish-fed diets (7805.67 organism/ml). The study revealed that LYFSB significantly influenced the zooplankton community, with protozoa dominating in biofloc water and rotifer in tilapia gut. LYFSB10 % and LYFSB20 % had the highest bacteria counts. Fish fed with LYFSB10 % and LYFSB20 % diets showed the highest values for specific growth rate (2.51 % day−1) and weight gain (24.92 g fish−1). These diets also exhibited increased activity levels of trypsin, lipase, and amylase enzymes. Increasing the inclusion of LYFSB in fish diets as a replacement for FM improved the intestinal and liver health of fish. The diets with LYFSB10 % and LYFSB20 % showed the highest levels of globulin, total protein, albumin, and IgM, with no significant differences between them. Fish fed LYFSB10 % had lower cholesterol and triglyceride levels. Superoxide dismutase (SOD) and catalase (CAT) activities were highest in fish fed LYFSB10 % and LYFSB20 %, while malondialdehyde (MDA) activity was lowest in the LYFSB30 % diet. The study showed that the biofloc system enhanced water quality and increased the efficiency of tilapia fed LYFSB10 % and LYFSB20 %.

Hydrology and trophic flexibility structure alpine stream food webs in the Teton Range, Wyoming, USA

AbstractUnderstanding biotic interactions and how they vary across habitats is important for assessing the vulnerability of communities to climate change. Receding glaciers in high mountain areas can lead to the hydrologic homogenization of streams and reduce habitat heterogeneity, which are predicted to drive declines in regional diversity and imperil endemic species. However, little is known about food web structure in alpine stream habitats, particularly among streams fed by different hydrologic sources (e.g., glaciers or snowfields). We used gut content and stable isotope analyses to characterize food web structure of alpine macroinvertebrate communities in streams fed by glaciers, subterranean ice, and seasonal snowpack in the Teton Range, Wyoming, USA. Specifically, we sought to (1) assess community resource use among streams fed by different hydrologic sources, (2) explore how variability in resource use relates to feeding strategies, and (3) identify which environmental variables influenced resource use within communities. Average taxa diet differed among all hydrologic sources, and food webs in subterranean ice‐fed streams were largely supported by the gold alga Hydrurus. This finding bolsters a hypothesis that streams fed by subterranean ice may provide key habitat for cold‐water species under climate change by maintaining a longer growing season for this high‐quality food resource. While a range of environmental variables associated with hydrologic source (e.g., stream temperature) were related to diet composition, hydrologic source categories explained the most variation in diet composition models. Less variable diets within versus among streams suggest high trophic flexibility, which was further supported by high levels of omnivory. This inherent trophic flexibility may bolster alpine stream communities against future changes in resource availability as the mountain cryosphere fades. Ultimately, our results expand understanding of the habitat requirements for imperiled alpine taxa while empowering predictions of their vulnerability under climate change.

Black phosphorus quantum dots induced neurotoxicity, intestinal microbiome and metabolome dysbiosis in zebrafish (Danio rerio)

The potential toxicity of BPQDs has received considerable attention due to their increasing use in biomedical applications. In this study, the toxicity of BPQDs at concentrations of 5 μg/mL, 50 μg/mL, and 500 μg/mL on the brain-gut axis was assessed in zebrafish. Following 35 days of exposure, the neurotransmitter, locomotor behavior, gut barrier (physical barrier, chemical barrier, and microbial barrier), and gut content metabolism in zebrafish were evaluated. The results indicated that BPQDs induced the locomotor behavior abnormalities, inhibited acetylcholinesterase activity, induced dopaminase activity, and promoted apoptosis in zebrafish brain tissue. Meanwhile, BPQDs caused damage to the physical and chemical barriers in zebrafish intestinal tissue, which increased the permeability of the intestinal mucosa, and induced oxidative stress and apoptosis. The gut microbiota was analyzed by 16S rRNA gene sequencing. The results showed that BPQDs caused dysbiosis of the gut microbiota, resulting in decreased diversity. Specifically, the relative abundance of Firmicutes, Bacteroidetes, and Actinobacteria decreased, while the relative abundance of Proteobacteria and Clostriobacteria increased. At the genus level, the high concentration BPQDs showed a significant increase in Cetobacterium, Pleisionomas, Aeromonas, and other bacteria. Bioinformatic analysis revealed a correlation between the relative abundance of the gut microbiota and antioxidant levels, immune response, and apoptosis. Statistical analysis of the metabolomic revealed significant perturbations in several metabolic pathways, including amino acid, lipid, nucleotide, and energy metabolism. In addition, correlation analysis between microbiota and metabolism confirmed that gut microbiota dysbiosis was closely associated with metabolic dysfunction. The histopathologic injury supported the changes in biomarkers and the expression of related marker genes in the gut-brain axis, indicating the communication between the gut peripheral nerves and the CNS. The results indicate that BPQDs induce gut microbiota dysbiosis, disrupt metabolic function, and induce neurotoxicity, probably by disrupting the homeostasis of the microbiota-gut-brain axis. In summary, this study demonstrates the effects of BPQDs on physiological changes within the zebrafish brain-gut axis and provides valuable data for assessing the toxicological risks of BPQDs in aquatic ecosystems.

Feeding habits of the longfin goatfish Upeneus supravittatus Uiblein and Heemstra, 2010, along Chennai coast, south India

Recognising the need to understand the feeding habits of marine fishes, a study was undertaken on the longfin goatfish Upeneus supravittatus Uiblein and Heemstra, 2010, which contributed to trawl fisheries along Chennai coast (south-east coast of India). Dataon trophic attributes such as mouth gape area, gill raker counts, stomach and intestine lengths and gut condition and contents were collected and analysed to determine condition index, index of relative importance (IRI), niche breadth and trophic level (TrL) with reference to two variables, namely, body size (small, medium and large) and season (post north-east monsoon (PNE); summer (SUM); south-west monsoon (SW); north-east monsoon (NE). The mouth gape area of U. supravittatus was 129.3 mm2. The maximum body depth-total length ratio was 1:5.0; gill rakers in lower arch was 29 and the relative intestine length was 0.48. Empty stomach contributed 56.1% of the samples. U. supravittatus fed on prey belonging to 25 Orders and >40 Genera. Decapods such as shrimps and crablets were the main prey followed by fishes. The IRI of decapods was 6474 and that of fishes was only 193. The maximum prey size predated by the fish was 33.5 and 9.8% in terms of the predator’s length and weight, respectively. Higher prey diversity was noticed in small size group and during south-west monsoon season. The narrow niche breadth of 0.20 showed the selective nature of the fish to feed on decapods. The fish is a benthic carnivore with a mean trophic level of 3.58. The trophic level decreased with body size. Diet similarity was evident between north-east and post north-east monsoon and between summer and south-west monsoon seasons. Diversity indices showed marginal variation in prey diversity among size groups and among seasons. This study paves way for estimating production efficiency of U. supravittatus. Keywords: Diet composition, Index of relative importance, Trophic level, Trophic morphology, U. supravittatus

Diet and size at birth affect larval rockfish condition and survival

Feeding success and maternal effects on larval size have long been hypothesized to be important contributors to interannual recruitment variability in marine fishes. This study examined the feeding ecology and influences of diet and size at birth on length and growth of larval rockfishes (Sebastes spp.). Prey carbon biomass and selection were calculated from gut contents, size at birth was estimated using otolith core size, and recent growth was derived from outer otolith increment widths. Biomass contributions of preferred prey and otolith data were integrated into Bayesian hierarchical models predicting length and growth. Larvae primarily fed on and selected for copepod nauplii and calanoid copepodites, modulating feeding with ontogeny and in response to prey availability. Based on carbon weight, the relative contribution of calanoid copepodites to the diet was more strongly and positively correlated with length and growth than that of nauplii. Younger larvae experienced faster growth in association with calanoid copepodite consumption than older larvae. Positive effects of core radius suggest that initial larval size, believed to be mediated by maternal provisioning, increases the likelihood of survival, larger size, and faster growth. These findings ultimately provide evidence that selective feeding and size at birth mediate rockfish survival in early life stages.

To pool or not to pool: Pooled metabarcoding does not affect estimates of prey diversity in spider gut content analysis

Abstract Gut content metabarcoding has provided important insights into the food web ecology of spiders, the most dominant terrestrial arthropod predators. In small invertebrates, like spiders, gut content analysis is often performed on whole body DNA extracts of individual predators, from which prey sequences are selectively enriched and sequenced. Since many spider species are generalist predators, large numbers of samples comprising individual spider specimens must be analysed to recover an exhaustive image of a spider species' prey spectrum, which is costly and time‐consuming. Pooled processing of bulk samples of multiple specimens has been suggested to reduce the necessary workload and cost while still recovering a representative estimate of the prey diversity. However, it is still unclear if pooling approaches lead to bias in recovering the prey spectrum and if the results are comparable with data from individually processed spiders. Here, we test the effects of metabarcoding pooled spider gut content on the recovered taxonomic diversity and composition of prey. Using a newly adapted primer pair, which efficiently enriches COI barcode sequences of diverse arthropod prey groups while suppressing spider amplification, we test if pooling leads to reduced taxonomic diversity or skewed estimates of prey composition. Our results show that pooling and individual processing recover highly correlated taxonomic diversity and composition of prey. The only exception are very rare prey items which were less well recovered by pooling. Our results support pooling as a cost‐effective and time‐efficient approach to recover the diet of generalist predators for population‐level studies of spider trophic interactions.

Niche partitioning of invasive Amur sleeper (Perccottus glenii) amongst native fish communities in three different freshwater ecosystems

The invasive fish, Amur sleeper, poses a significant and growing threat to Central European freshwater ecosystems. Despite its rapid spread, the ecological implications of its invasion have been poorly explored. Recent findings confirm its presence in various Estonian freshwater systems, raising concerns about its imminent expansion into larger lakes. To better understand its potential ecological impacts, we explored the isotopic niche of the Amur sleeper in comparison with native fish species co-existing in three Estonian freshwater ecosystems. We employed carbon and nitrogen stable isotope analyses alongside gut content analyses. Our findings show that the Amur sleeper’s diet in newly-invaded Estonian water bodies predominantly comprises benthic macroinvertebrates, although it may also include fish, confirming its role as a predator in the local food web. Notably, Amur sleeper populations exhibited clear isotopic niche partitioning in three invaded ecosystems. A logistic regression model, based on stomach content analyses, revealed an ontogenetic diet shift from benthivorous to piscivorous feeding habits from small to large specimens. Amur sleeper exhibits voracious, non-selective feeding habits, which can negatively impact native freshwater communities. The ability to occupy a distinct isotopic niche, with minimal overlap with native fish populations, may reduce interspecific competition, facilitating the spread and establishment of Amur sleeper in newly-invaded habitats. Managing the spread of this invasive species thus becomes even more critical to safeguard the integrity of native aquatic ecosystems.

Plastics at an Offshore Fish Farm on the South Coast of Madeira Island (Portugal): A Preliminary Evaluation of Their Origin, Type, and Impact on Farmed Fish

Plastic pollution is a global problem affecting all ecosystems, and it represents most of the marine litter. Offshore aquaculture is a sector particularly vulnerable to this issue. To investigate this concern, the present study employed videography to monitor macroplastics at an offshore fish farm on Madeira Island (Portugal) and analysis of fish gut content to evaluate macroplastic ingestion by farmed sea bream Sparus aurata. Our analysis revealed that the majority of identified plastic debris originated from domestic use (66.66%) and fisheries/aquaculture activities (24.99%). While the number of dead fish suitable for sampling was limited (1.05% of the total mortality), macroplastic debris ingestion was identified in 5.15% of the total mortalities and reported for the first time in species in offshore farming conditions. Fish ingested fragmented plastic sheets, with the amount positively correlated with fish weight (r = 0.621, p = 0.031, n = 12). Notably, the stretched length of these fragments exceeded 50% of the standard length of most fish. Inconsistencies were observed in the number of samples collected per cage and per week. To ensure robust results, these discrepancies should be rectified in future studies. Additionally, extending the sampling period to encompass all seasons would be beneficial for a more comprehensive understanding of seasonal variations in plastic occurrence.

Puerarin ameliorates colitis by direct suppression of macrophage M1 polarization in DSS mice

BackgroundUlcerative colitis (UC) is a type of inflammatory bowel disease primarily affecting the colon and rectum. The clinical symptoms of UC include persistent diarrhea, abdominal pain, and rectal bleeding, with chronic inflammation often limited to the mucosal layer of the colon. Macrophages play a significant role in the pathogenesis of UC in response to the presence of gut microbiota. Puerarin is an active compound derived from the root of pueraria lobata, a traditional Chinese herbal medicine, and exhibits potent anti-inflammatory properties in various diseases and disease models including UC-like colitis in mice. However, how the molecule achieves its therapeutic effect in colitis by re-polarizing macrophages remains poorly understood. PurposeUtilizing in vivo and in vitro experimental methods along with multi-omics analysis, we aimed to elucidate the potential mechanism by which puerarin targets macrophages to treat colitis. MethodsThe inflammation induced by DSS was assessed both locally in the gut and systemically, and the anti-inflammatory effect of puerarin was evaluated using molecular and histological assays such as H&E staining, qPCR, ELISA, Western blot, and immunofluorescence. Intestinal permeability parameters were measured by in vivo imaging, immunofluorescence, Western blot, qPCR, and PAS staining. The central role of macrophages in colitis was investigated through macrophage depletion/infusion using cytological methods. The direct effects of puerarin on the macrophages were examined by CCK8, flow cytometry, and qPCR in vitro. Additionally, 16S rRNA sequencing and metabolomics analysis of gut contents were conducted. Identification of key pathogenic flora was facilitated by a trans-omic approach and validated both in vitro and in vivo. ResultsPuerarin exerted a direct and robust suppression of M1-like polarization of macrophages in vitro, which was sufficient to confer therapeutic benefits in terms of colonic lesions and systemic inflammation in DSS mice. Puerarin also reduced the abundance of Akkermansia muciniphila in the gut, which was significantly upregulated in DSS mice in our experimental context. Further study demonstrated that puerarin effectively suppressed M1-like macrophage activation induced by Akkermansia muciniphila secreted protein Amuc_2172, thereby altering the pathology in the DSS model. ConclusionOur data suggest that the pathogenesis of DSS colitis is mediated by host cellular responses to toxic foreign molecules and the gut microbiota, and targeting specific cell populations, such as macrophages, with puerarin holds potential therapeutic value.

Feeding ecology of the urchin symbiont Dactylopleustes yoshimurai (Amphipoda) revealed by DNA metabarcoding

The nature of symbiotic relationships between organisms can be difficult to assess and may range from commensalism, to mutualism, and parasitism. Trophic linkage and feeding ecology are essential to disentangle symbiont-host relationships/interactions. Amphipods of the genus Dactylopleustes are known as urchin symbionts. Though their ecology remains largely unknown, Dactylopleustes was recently reported to aggregate on diseased hosts, suggesting that Dactylopleustes feeds on diseased urchins’ tissues and uses urchins as both a habitat and prey. We investigated by DNA metabarcoding analyses, the feeding ecology of Dactylopleustes yoshimurai in relation to growth and disease status of the host (Strongylocentrotus intermedius). Contrary to our hypothesis, sequence reads from the gut contents were dominated by planktonic copepods regardless of body size or host disease status. These results suggest that they mainly feed on copepod fecal pellets deposited on sediments, and do not have a strong trophic linkage with their host. Large individuals on diseased urchins feed more on urchins than those on healthy urchins. However, their main prey still remains copepods, implying that host disease has a limited effect on the feeding behavior. In conclusion, our study indicates that this species is mainly commensal, but also may parasitize its host depending on the situation.

Feeding habits of splendid alfonsino Beryx splendens in the vicinity of Kuroshio, the south of Japan

AbstractGut contents and nitrogen isotope ratio (δ15N) analyses were conducted on splendid alfonsino Beryx splendens collected in the vicinity of Kuroshio from May 2015 to November 2016 (n = 708) to identify their feeding habits in the Western North Pacific. Micronektonic fish, shrimp, and squid were the dominant prey species, with the Decapoda Acanthephyra quadrispinosa, Prehensilosergia prehensilis, Cephalopoda Enoploteuthis chunii, Chiroteuthis calyx, Teleostei Sigmops gracilis, and Gonostoma elongatum. These micronektons are common in the Kuroshio Current; thus, B. splendens is a possible opportunistic feeder. Gut content weight (GCW), occurrence (%O) of fish and squid, and δ15N were significantly increased with the fork length (FL) of B. splendens. Only the %O of shrimp does not show a significant relationship with the FL of B. splendens. These indicated the ontogenetic shift of dominant prey from shrimp to fish. Fattened specimens could also prey on a greater number of fish. The seasonality of GCW and %O values was high in spring and autumn and low in summer and winter. This seasonality indicated that the feeding habits of B. splendens are controlled by primary productivity in the surface layer and/or by maturity. When the Kuroshio flowed in the north of Hachijojima Island, the GCW was significantly increased, and some organisms, including C. calyx, G. elongatum, and S. gracilis, were preyed on more. While the offshore area of the Kuroshio has low productivity, B. splendens can actively prey in this area, indicating that it is an important feeding ground for this species.

Insight into the diet of early stages of mesopelagic fishes in the Indian Ocean using DNA metabarcoding

Despite playing a critical role in oligotrophic ocean food webs, relatively little is known about the diet of mesopelagic fishes in the Indian Ocean. These fishes are an abundant component of the micronekton assemblages and are a major energy- and nutrient-rich food source, linking the plankton which they feed on to marine predators at higher trophic levels. DNA metabarcoding, a molecular method to identify species from mixed assemblages, has not been commonly used in studies of mesopelagic fish diet, but using it to analyse gut contents can greatly improve the understanding of mesopelagic fish feeding ecology. In this study, we apply DNA metabarcoding (18S rRNA and COI) to gut contents from Stomiiformes and Myctophiformes species from 20 sampling stations covering 30 ˚ of latitude on the 110 ˚ E meridian in the Indian Ocean. In total, 174 fish specimens from 13 genera were examined. Differences in the gut contents among fish families, geographic areas and fish stages were identified. Specimens within the family Myctophidae had the most diverse diet, more so in the northern sampling stations than the south. Gonostomatidae had the least diverse diet. Overall, the most frequently identified prey items from the gut contents were calanoid copepods and halocyprid ostracods. The proportion of halocyprids were also identified to be significantly different among Myctophidae larvae and juvenile specimens, which is a potential ontogenic shift in diet towards a higher ostracod contribution in juveniles as mouth gape increases. In comparison with other plankton abundance data, Copepoda were the most abundant plankton in the gut contents of all fishes sampled throughout the latitudinal gradient, allowing them to be a potential food resource through the region. There are indications that other less abundant plankton, such as like Ostracoda and Malacostraca, may be preferentially targeted by some mesopelagic fish families.

PSIV-18 Prevalence and concentrations of Fusobacterium necrophorum subsp. necrophorum in gut contents and tissues in steers with experimentally induced liver abscesses

PSIV-18 Prevalence and concentrations of <i>Fusobacterium necrophorum subsp. necrophorum</i> in gut contents and tissues in steers with experimentally induced liver abscesses

What's on the menu? A novel molecular gut content analysis to investigate the feeding behavior of phytophagous insects.

The relationship between phytophagous insects and plants is a central aspect of food webs and ecosystem functioning. The introduction of new species into an environment can have significant impacts on the food web of a native ecosystem. In many cases, there is a lack of knowledge on the biology and feeding behavior of invasive species prior their introduction and in the invaded regions. Gut content analyses of insects have provided valuable information on the host spectrum of insects. However, current approaches are time-consuming and costly. Here, we describe a new molecular gut content analysis (GCA) approach using the Oxford Nanopore (ONT) Flongle sequencing platform to characterize the plant DNA present in the gut of the highly polyphagous insect species Halyomorpha halys. We demonstrate that this technique efficiently amplifies and correctly identifies plant DNA in a mock community. We performed a feeding experiment to determine the sensitivity of this approach and to assess how long the plant DNA can be detected. All plants used in the feeding experiment were correctly identified and detected after 56 days. Surprisingly, we also detected various plant genera that were not included in the feeding experiment and thus were likely ingested months before the experiment. Our study suggests that the GCA using the ONT Flongle sequencing platform represents a rapid and cost-efficient diagnosis of the dietary preferences, host range, and the diversity of consumed plant species of pest insects with high precision.

The Abrolhos Nominally Herbivorous Coral Reef Fish Acanthurus chirurgus, Kyphosus sp., Scarus trispinosus, and Sparisoma axillare Have Similarities in Feeding But Species-Specific Microbiomes

Coral reefs rely heavily on reef fish for their health, yet overfishing has resulted in their decline, leading to an increase in fast-growing algae and changes in reef ecosystems, a phenomenon described as the phase-shift. A clearer understanding of the intricate interplay between herbivorous, their food, and their gut microbiomes could enhance reef health. This study examines the gut microbiome and isotopic markers (δ13C and δ15N) of four key nominally herbivorous reef fish species (Acanthurus chirurgus, Kyphosus sp., Scarus trispinosus, and Sparisoma axillare) in the Southwestern Atlantic’s Abrolhos Reef systems. Approximately 16.8 million 16S rRNA sequences were produced for the four fish species, with an average of 317,047 ± 57,007 per species. Bacteria such as Proteobacteria, Firmicutes, and Cyanobacteria were prevalent in their microbiomes. These fish show unique microbiomes that result from co-diversification, diet, and restricted movement. Coral-associated bacteria (Endozoicomonas, Rhizobia, and Ruegeria) were found in abundance in the gut contents of the parrotfish species Sc. trispinosus and Sp. axillare. These parrotfishes could aid coral health by disseminating such beneficial bacteria across the reef. Meanwhile, Kyphosus sp. predominantly had Pirellulaceae and Rhodobacteraceae. Four fish species had a diet composed of turf components (filamentous Cyanobacteria) and brown algae (Dictyopteris). They also had similar isotopic niches, suggesting they shared food sources. A significant difference was observed between the isotopic signature of fish muscular gut tissue and gut contents, pointing to the role that host genetics and gut microbes play in differentiating fish tissues.