This study aimed to synthesize and characterize a novel guanine derivative, namely ( 4-nitro-N-((6-oxo-6,9-dihydro-1H-purin-2-yl)carbamothioyl)benzamid) (abbreviated as NPBL4). This compound possesses an intriguing chemical structure, consisting of a guanine moiety (a bicyclic heterocyclic base) linked to a benzamide group through a carbamothioyl linker. The synthesis of this nitrogenous base derivative involved two steps. Firstly 4-nitro-N-thioformylbenzamide was synthesized by reacting 4-nitrobenzoyl chloride with ammonium thiocyanate in acetone. Subsequently, the obtained 4-nitro-N-thioformylbenzamide was reacted with guanine to yield the desired ligand. In addition to the ligand synthesis, the study focused on preparing complexes of various metal ions (Mn+2, Co+2, Ni+2, Cu+2, Zn+2, Cd+2, and Pd+2) with the prepared guanine derivative. The ligand and complexes were subjected to comprehensive characterization using techniques such as infrared spectra, ultraviolet-visible spectra, 1H-NMR, 13C-NMR spectra, elemental analysis (C.H.N.S.), molar conductivity measurement, magnetic susceptibility, atomic absorption, melting point determination, and study the biological activity for the complexes. The results of these characterization studies led to the determination of the general formulas for the prepared complexes, which were found to be [MCl2(NPB)2], where M represents the respective metal ion (Mn+2, Co+2, Ni+2, Cu+2, Zn+2, Cd+2, and Pd+2). Notably, the geometric shape of all the prepared complexes was determined to be an octahedron. In summary, this study successfully synthesized and characterized a novel guanine derivative (NPB) and investigated its complexes with various metal ions. The findings provided valuable insights into the chemical properties and structural features of these compounds.