This study investigated the efficacy of the rotating algal biofilm (RAB) for treating soy sauce wastewater (SW) and its related treatment mechanisms. The RAB system demonstrated superior nutrient removal (chemical oxygen demand, ammonium nitrogen, total nitrogen, and phosphorus for 92 %, 94 %, 91 %, and 82 %, respectively) and biofilm productivity (14 g m−2 d–1) at optimized 5-day harvest time and 2-day hydraulic retention time. This was mainly attributed to the synergistic interactions within the algae-fungi (Apiotrichum)-bacteria (Acinetobacter and Rhizobia) consortium, which effectively assimilated certain extracellular polymeric substances into biomass to enhance algal biofilm growth. Increased algal productivity notably improved protein and essential amino acid contents in the biomass, suggesting a potential for animal feed applications. This study not only demonstrates a sustainable approach for managing SW but also provides insight into the nutrient removal and biomass conversion, offering a viable strategy for large-scale applications in nutrient recovery and wastewater treatment.