Grey Seals Halichoerus Grypus Research Articles

Seals, fish, humans and parasites in the Baltic: ecology, evolution and history.

Evolutionary and ecological processes affecting the interactions between hosts and parasites in the aquatic environment are at display in the Baltic Sea, a young and ecologically unstable marine ecosystem, where fluctuating abiotic and biotic factors affect the parasitofauna in fish. The dynamic infections of Baltic cod, a subpopulation of the Atlantic cod (Gadus morhua Linnaeus), with third stage anisakid nematode larvae of Pseudoterranova decipiens (Krabbe, 1878) and Contracaecum osculatum (Rudolphi, 1802) have increased following a significant increase of the Baltic grey seal Halichoerus grypus (Fabricius) population in the region. Cod serves as a paratenic host and marine mammals, pinnipeds, are definitive hosts releasing parasite eggs, with faeces, to the marine environment, where embryonation and hatching of the third stage larva take place. The parasite has no obligate intermediate hosts, but various invertebrates, smaller fish and cod act as paratenic hosts transmitting the infection to the seal. Contracaecum osculatum has an impact on the physiological performance of the cod, which optimises transmission of the larva from fish to seal. Thus, a muscle mass decrease of nearly 50% may result from heavy C. osculatum infections, probably amplified by a restricted food availability. The muscle atrophy is likely to reduce the escape reactions of the fish when meeting a foraging seal. In certain regions, where fish and seals are restricted in their migration patterns, such as the semi-enclosed Baltic Sea, the predation may contribute to a severe cod stock depletion. The parasites are zoonotic and represent a human health risk, when consumers ingest insufficiently heat- or freeze-treated infected products. Marked infections of the cod were previously reported during periods with elevated seal populations (late 19th and middle 20th century) and various scenarios for management of risk factors are evaluated in an evolutionary context.

A Novel Approach to Using Seabed Geomorphology as a Predictor of Habitat Use in Highly Mobile Marine Predators: Implications for Ecology and Conservation

Understanding how marine predators find patchily distributed prey resources in a dynamic environment is key to identifying important ecological areas for ecosystem-level conservation management. However, the mechanisms underpinning important foraging areas often result from complex interactions between static and dynamic covariates (e.g. topography and currents). Modelling habitat associations with hydrodynamic processes is rarely useful when attempting to identify and characterise foraging areas across an individual’s foraging range. Investigating the influence of static habitat features on predator behaviour can provide a more tractable baseline understanding of habitat associations, upon which additional complexity can be added. Seabed gradient covariates (e.g. slope and aspect) are often used, yet such metrics are computed at singular user-defined resolutions, and provide limited ecological insight when used in isolation. Instead, categorising the seabed into geomorphological features may provide better characterisation of seabed structure. Here we explore the utility of a pattern recognition algorithm to delineate whole geomorphological features (“geomorphons”) on the seabed (e.g. valleys, ridges, footslopes) from bathymetry data, and examine the influence of geomorphology on marine predator habitat use. We demonstrate the potential application of this approach in a case study, examining the influence of geomorphons on the at-sea behaviour of a highly mobile predator inhabiting shelf seas: the grey seal (Halichoerus grypus). We analyse GPS tracking data from three seals tagged in the southern North Sea, an area with heterogeneous geomorphology. We use hidden Markov models (HMMs) to infer foraging and travelling behaviour and model the effect of different feature types on the probability of switching between states. All three seals showed an increased probability of transitioning from travelling to foraging when encountering slopes, footslopes and hollows, and foraging activity was concentrated at slopes on the fringes of the Dogger Bank. We hypothesise that such features may host prey aggregations, and/or lead to increased prey capture success. The results suggest the importance of such areas for grey seals in the southern North Sea, a region undergoing rapid and widespread anthropogenic habitat change. This method could be incorporated into future species distribution models to improve estimates of predator distribution, informing conservation management and marine spatial planning.

Using virtual reality for anatomical landmark annotation in geometric morphometrics.

To study the shape of objects using geometric morphometrics, landmarks are oftentimes collected digitally from a 3D scanned model. The expert may annotate landmarks using software that visualizes the 3D model on a flat screen, and interaction is achieved with a mouse and a keyboard. However, landmark annotation of a 3D model on a 2D display is a tedious process and potentially introduces error due to the perception and interaction limitations of the flat interface. In addition, digital landmark placement can be more time-consuming than direct annotation on the physical object using a tactile digitizer arm. Since virtual reality (VR) is designed to more closely resemble the real world, we present a VR prototype for annotating landmarks on 3D models. We study the impact of VR on annotation performance by comparing our VR prototype to Stratovan Checkpoint, a commonly used commercial desktop software. We use an experimental setup, where four operators placed six landmarks on six grey seal (Halichoerus grypus) skulls in six trials for both systems. This enables us to investigate multiple sources of measurement error. We analyse both for the configuration and for single landmarks. Our analysis shows that annotation in VR is a promising alternative to desktop annotation. We find that annotation precision is comparable between the two systems, with VR being significantly more precise for one of the landmarks. We do not find evidence that annotation in VR is faster than on the desktop, but it is accurate.

Grey seal Halichoerus grypus breeding sites contribute substantial carrion biomass to the Firth of Forth

Decomposing organic matter is central to the recycling of energy and nutrients in all ecosystems. Few studies have investigated the role of animal carrion biomass in ecosystem functioning, and quantitative data on carrion biomass are lacking. The role of carrion inputs in the marine environment specifically is poorly understood. The grey seal Halichoerus grypus breeding colony on the Isle of May in the Firth of Forth, Scotland, provides insight into the contribution of regular carrion pulses to the surrounding marine ecosystem. This study analysed 3 breeding locations with a range of topographies, elevations and tidal influences. Carcasses were mapped from aerial images and ground visual surveys in the 2008 and 2012 breeding seasons. Generalised linear mixed models were used to explore the degree to which breeding location and the position of a carcass influenced its availability to marine scavengers. Carcasses closer to shore were more likely to be completely displaced to the marine environment, and this effect varied with breeding location. An approximate 0.9 to 1.3 t of biomass per hectare of breeding site per year were released into the marine system. For carcasses that were below the high-water spring tide range but remained on shore, we quantified the typical duration of submersion to range from 5% to 44% of the time carcasses were ashore. Additionally, up to 808 kg of carrion was accessible to marine scavengers while washed by tides. Our results suggest breeding colonies of grey seals may contribute significantly to the carrion biomass available in local marine systems.

Tracking wildlife energy dynamics with unoccupied aircraft systems and three‐dimensional photogrammetry

Abstract We present a novel application using unoccupied aircraft systems (UAS; drones) for structure‐from‐motion three‐dimensional (3‐D) photogrammetry of multiple, free‐living animals simultaneously. Pinnipeds reliably haul out on shore for pupping and breeding each year, accompanied by dramatic female‐to‐pup mass transfer over a short lactation period and males lose mass while defending mating territories. This provides a tractable study system for validating the use of UAS as a non‐invasive tool for tracking energy dynamics in wild populations. UAS imagery of grey seals Halichoerus grypus was collected at Saddle Island, Nova Scotia. A multirotor UAS was piloted in 360‐degree orbits around relatively dense animal aggregations and georeferenced images were used for construction of a 3‐D point cloud, orthomosaic and Digital Surface Model for animal volumetric measurements. Directly following UAS survey, a subset of adult females were hand‐measured (morphometrics, blubber depth, n = 21 handlings [15 were unique animals]) and female–pup pairs were weighed (adult females: n = 32 [24]; pups: n = 33 [23]) to validate that UAS 3‐D photogrammetric models provided accurate animal volume and mass estimates. UAS two‐dimensional body length measurements were sensitive to animal recumbency and posture. The new UAS 3‐D photogrammetric method overcame these constraints, and aerial‐derived body volume measurements were equivalent to those collected from the ground. UAS body volume measurements precisely predicted ‘true’ body mass (mean absolute error, adult female: 3.8 kg, 2.1% body mass; pup: 4.1 kg, 9.8%), and exhibited a stronger relationship with total body mass than with blubber volume. The method was applied to 673 free‐living animals to characterize volume and mass dynamics across lactation and breeding for a much larger sample size than would be possible using traditional ground methods. Indeed, 1–46 animals (M ± SE: 9.2 ± 1.2) were modelled concurrently within the focal area of a UAS flight. Application of the method also captured significant inter‐annual variation in body volume/mass dynamics, and female‐to‐pup energy transfer efficiencies were lower when there was low sea ice extent. The UAS 3‐D photogrammetric method presented in this study is likely to be broadly applicable to other species, and the ability to measure whole groups of free‐living animals at once makes strides towards ‘weighing populations’.

Signs of life: Oxygen sensors confirm viability, measure oxygen consumption and provide rapid, effective contamination monitoring for field‐based tissue culture

Abstract Understanding the ecology and evolution of wildlife and domesticated species requires knowledge of their physiological responses to environmental change and the constraints under which they operate. However, whole animal experiments are often limited in sample size and can be logistically and ethically challenging. Culture techniques represent a powerful approach, but are used infrequently in field research due to practical constraints. We used minimal tissue culture equipment in a remote field site for in vitro explant experiments using blubber from wild grey seals Halichoerus grypus. Assessing explant viability and detecting microbial contamination in remote field sites, where facilities are often small, unspecialised and more vulnerable to bacterial or fungal infection, present major challenges. We investigated whether oxygen‐sensitive planar optodes (OSPO) in closed system respirometry could be used to assess oxygen consumption by blubber explants from suckling and fasting wild seal pups as a proxy for viability. We also explored whether OSPOs could provide rapid information on whole animal relevant physiological metrics by determining whether explant oxygen consumption correlated with the nutritional state of the animal, blubber depth and other tissue metabolic properties, including glucose uptake, lactate production and lipolysis. Vials containing blubber explants consumed significant amounts of oxygen compared to controls, showing tissues were metabolically active. Oxygen consumption differed between nutritional states and blubber tissue depth. These differences were reflected in other tissue metabolic properties. Dissolved oxygen levels remained consistent over 24 hr in 94% of control vials containing only culture media. In 6% of control vials extremely rapid oxygen consumption preceded, by 2–3 days, colour changes in the phenol‐red containing media that indicate lactic acidosis from microbial metabolic activity. Oxygen use in control vials was, therefore, an effective monitoring system that provided vital early warning of media contamination, allowing stocks to be discarded, which prevented erroneous results and avoided waste of valuable field time and irreplaceable samples. OSPO are thus a useful tool for simultaneously assessing tissue oxygen consumption, investigating functional physiological differences and monitoring microbiological contamination in culture experiments, particularly in field laboratories studying live tissues from wildlife.

Acoustic risk balancing by marine mammals: anthropogenic noise can influence the foraging decisions by seals

Abstract Avoidance of anthropogenic sounds has been measured in many species. The results, which are typically based on observations in limited exposure contexts, are frequently used to inform policy and the regulation of industrial activities. However, the occurrence and magnitude of avoidance may be a consequence of complex risk‐balancing decisions made by animals. The importance of the factors in decision‐making, such as perceived risks associated with the sounds or prey quantity and quality during sound exposure, is unknown. Here we address this knowledge gap by measuring the relative influence of perceived –risk of a sound (silence, pile driving, and a tidal turbine) and prey patch quality on decision‐making and foraging success in grey seals Halichoerus grypus. Seals were given access to two underwater ‘prey patches’ in an experimental pool where fish were delivered at controlled rates to simulate a low‐density (LD) and a high‐density (HD) prey patch. Acoustic playbacks were made using an underwater speaker above one of the prey patches (randomised during the study), and three decision and foraging metrics (foraging duration, foraging effort allocation between the prey patches, and foraging success) were measured. Foraging success was highest during silent controls and was similar regardless of speaker location (LD/HD). Under the tidal turbine and pile‐driving treatments, foraging success was similar to the controls when the speaker was located at the HD prey patch but was significantly reduced (~16%–28% lower) when the speaker was located at the LD prey patch. Foraging decisions by the seals were consistent with a risk/profit balancing approach. Avoidance rates depend on the quality of the prey patch as well as the perceived risk. Policy implications. The results suggest that foraging context is important when interpreting avoidance behaviour and should be considered when predicting the effects of anthropogenic activities. For example, sound exposure in different prey patch qualities may result in markedly different avoidance behaviour, potentially leading to contrasting predictions of impact in Environmental Assessments. We recommend future studies explicitly consider foraging context, and other contextual factors such as behavioural state (e.g. foraging or travelling) and habitat quality.

An external telemetry system for recording resting heart rate variability and heart rate in free-ranging large wild mammals.

Measures of heart rate variability (and heart rate more generally) are providing powerful insights into the physiological drivers of behaviour. Resting heart rate variability (HRV) can be used as an indicator of individual differences in temperament and reactivity to physical and psychological stress. There is increasing interest in deriving such measures from free ranging wild animals, where individuals are exposed to the natural and anthropogenic stressors of life. We describe a robust, externally mounted heart rate monitor for use in wild mammals, deployed here on wild breeding adult female grey seals (Halichoerus grypus), that delivers millisecond precise measures of inter beat intervals (IBIs), allowing computation of resting HRV parameters. Based on Firstbeat™ heart rate belts, our system allows for remote, continuous recording of IBI data from over 30 individuals simultaneously at ranges of up to 200m. We assessed the accuracy of the IBI data provided by the Firstbeat™ system using concurrent IBI data derived from in-field electrocardiogram (ECG) recordings. Bland-Altmann analyses demonstrated high correspondence between the two sets of IBI data, with a mean difference of 0.87±0.16ms. We used generalized additive mixed-effects models to examine the impact of the default Firstbeat™ software artefact correction procedure upon the generation of anomalous data (flats and stairs). Artefact correction and individual activity were major causes of flats and stairs. We used simulations and models to assess the impact of these errors on estimates of resting HRV and to inform criteria for subsampling relatively error free IBI traces. These analyses allowed us to establish stringent filtering procedures to remove traces with excessive numbers of artefacts, including flats and stairs. Even with strict criteria for removing potentially erroneous data, the abundance of data yielded by the Firstbeat™ system provides the potential to extract robust estimates of resting HRV. We discuss the advantages and limitations of our system for applications beyond the study system described here.

Report of the NAMMCO-ICES Workshop on Seal Modelling (WKSEALS 2020)

To support sustainable management of apex predator populations, it is important to estimate population size and understand the drivers of population trends to anticipate the consequences of human decisions. Robust population models are needed, which must be based on realistic biological principles and validated with the best available data. A team of international experts reviewed age-structured models of North Atlantic pinniped populations, including Grey seal (Halichoerus grypus), Harp seal (Pagophilus groenlandicus), and Hooded seal (Cystophora cristata). Statistical methods used to fit such models to data were compared and contrasted. Differences in biological assumptions and model equations were driven by the data available from separate studies, including observation methodology and pre-processing. Counts of pups during the breeding season were used in all models, with additional counts of adults and juveniles available in some. The regularity and frequency of data collection, including survey counts and vital rate estimates, varied. Important differences between the models concerned the nature and causes of variation in vital rates (age-dependent survival and fecundity). Parameterisation of age at maturity was detailed and time-dependent in some models and simplified in others. Methods for estimation of model parameters were reviewed and compared. They included Bayesian and maximum likelihood (ML) approaches, implemented via bespoke coding in C, C++, TMB or JAGS. Comparative model runs suggested that as expected, ML-based implementations were rapid and computationally efficient, while Bayesian approaches, which used MCMC or sequential importance sampling, required longer for inference. For grey seal populations in the Netherlands, where preliminary ML-based TMB results were compared with the outputs of a Bayesian JAGS implementation, some differences in parameter estimates were apparent. For these seal populations, further investigations are recommended to explore differences that might result from the modelling framework and model-fitting methodology, and their importance for inference and management advice. The group recommended building on the success of this workshop via continued collaboration with ICES and NAMMCO assessment groups, as well as other experts in the marine mammal modelling community. Specifically, for Northeast Atlantic harp and hooded seal populations, the workshop represents the initial step towards a full ICES benchmark process aimed at revising and evaluating new assessment models.

Pathology of grey seals Halichoerus grypus in southwest England including pups in early rehabilitation.

Few investigations have examined the pathology of grey seals Halichoerus grypus in southwest England, where it is the most abundant marine mammal. Here, primary pathological findings are presented from 107 post-mortem examinations of grey seals in southwest England between 2013 and 2020. Over three-quarters were pups in their first year of life; the origins of the carcasses reflected the known breeding season and breeding sites of grey seals in the region. Trauma was the most common primary pathological finding (n = 49), followed by infectious disease (n = 36). Traumatic findings included fisheries-related trauma (n = 15), other acute physical traumas (n = 15) and other chronic traumas (n = 19). Infectious disease findings included respiratory infections (n = 21) and gastrointestinal infections (n = 9). There was no difference in the primary pathological findings for seals found dead or that died or were euthanased on the day they were found compared to those dying in early rehabilitation, suggesting that it is appropriate to include findings from seals in early rehabilitation in studies of wild grey seal pathology. Seals that had not been frozen before post-mortem examination were nearly twice as likely to have a primary pathological finding of infectious disease or trauma than those that had been frozen, highlighting the need, wherever possible, to avoid freezing seals prior to post-mortem examination.

Assessing seal carcasses potentially subjected to grey seal predation

In order to conduct an objective evaluation of potential ecological effects of grey seal predation on marine mammals, it is essential to establish a broad knowledge base helping in the thorough identification of such cases during post-mortem examination. The aim of this work is to report and discuss outcomes resulting from a retrospective evaluation of harbour (Phoca vitulina) and grey seal (Halichoerus grypus) stranding and necropsy data (n = 3274). In addition, the results are compared to a recent case of definite grey seal predation from Germany as well as reports from other countries. Carcasses potentially subjected to grey seal predation show severe lacerations with a circular pattern leaving a smooth, linear and cut-like wound margin. Large parts of skin and underlying tissue are detached from the body and loss of blubber is common. Occurrence frequencies of encountered lesions are presented and a list of parameters to be used for the assessment of similar cases as well as a complementary decision tree are suggested. With the proposed parameters, categories and tools, a baseline can be built in order to facilitate the standardised recognition of predation cases during post-mortem examinations of seals between groups working with populations across several geographic ranges.

Tracking young-of-the-year gray seals Halichoerus grypus to estimate fishery encounter risk

The current level of annual incidental bycatch of gray seals Halichoerus grypus in the New England sink gillnet fishery is the highest for all marine mammal species in the USA. One way to evaluate the risk of bycatch is to examine the risk of encounter between an animal and fishing gear based on the animal’s habitat use in relation to fishing activity. Here we used satellite telemetry deployed on 30 gray seal pups in 2019 and 2020 to measure the risk of encounter with large-mesh sink gillnet fishing effort throughout the Gulf of Maine and southern New England. We estimated relative encounter risk within 30 min grid cells in each calendar quarter based on the overlap of seal presence and fishing effort, and then validated the expected risk based on bycatch events reported by independent observers on board fishing vessels. The relative risk of seals encountering gillnet fishing gear was highest off southeastern Massachusetts in spring. Patterns in the estimated encounter risk fit our expectation that relatively high levels of habitat use and fishing effort correspond to increased encounter risk. The approach taken here can be used to identify times and areas of high encounter risk to justify altered fishing practices for purposes of avoidance, or to target observer monitoring intended to characterize and quantify bycatch. Mitigation strategies will need to be continuously monitored and updated to incorporate new information as conflicts with fisheries and gray seals are likely to continue.

Seal-induced losses and successful mitigation using Acoustic Harassment Devices in Estonian Baltic trap-net fisheries

During the last decades the number of grey seals Halichoerus grypus has increased more than tenfold in the Baltic Sea. having reached 38 000 in 2019, which has created increasing problems to the coastal fisheries. In the current study, 151 Estonian coastal fishermen were interviewed to sum all direct and indirect monetary losses. The total cost of the damage caused by seals to the Estonian fisheries was around 0.9 million euros in 2009. With the aim of mitigating seal impact, Acoustic Harassment Devices (AHDs, Lofitech) were tested. This study presents quantitative data on seal damage in Estonian trap-net fisheries and analyses the results of the attempts made to mitigate the damage by means of AHDs. It can be concluded that AHDs provided sufficient protection against the seal attacks.

Little interannual variability in gray seal (Halichoerus grypus) trophic niches during pregnancy despite variable environmental conditions

The successful recruitment of juveniles into a population is often dependent on receiving sufficient nutrition pre- and post-parturition. Thus, variation in maternal foraging ecology during pregnancy, whether due to prey choice, prey availability or fluctuations in environmental conditions, can impact offspring fitness in the subsequent breeding season. As many pinnipeds spend the majority of the gestation period at sea, past studies have used the biogeochemical analysis of pup tissues to infer female diets during this critical period. The objective of our study was to examine the trophic niches of a population of pregnant female gray seals Halichoerus grypus over a 4 yr period in coastal Massachusetts, USA by analyzing the stable carbon (δ13C) and nitrogen (δ15N) values of pup lanugo. In addition, we sought to determine if individual and inter-annual variation in pup body condition could be explained by differences in female trophic niches, prey availability, or environmental conditions. Stable isotope-based metrics of trophic niche position, width, and overlap indicated little to no interannual variability in female foraging ecology at the population level despite variation in environmental conditions and prey availability in the fall on Georges Bank. Model selection indicated a positive relationship between pup body condition and δ13C values, which is indicative of pregnant females foraging on benthic, demersal, or nearshore prey species during the fall prior to parturition. This indicates that individual variation in female foraging ecology during pregnancy has a carry-over effect on offspring condition with possible implications for first-year survival, and ultimately recruitment to the adult population.

Observations on mechanisms and phenomena underlying underwater and surface vocalisations of grey seals

ABSTRACT Air and water constitute acoustic propagation media with very different physical properties. Consequently, mechanisms for air- and water-borne sound generation observed in terrestrial and aquatic animals are also significantly different. Notwithstanding, some amphibious species are capable of making efficient use of their vocal tracts in both environments. The present study investigates such a phenomenon on the example of grey seals Halichoerus grypus. Grey seals vocalise both underwater and above the water surface emitting variety of sounds. Both kinds of vocalisations were recorded using microphones and hydrophones, and analysed for their acoustic parameters which could be related to the underlying generation mechanisms. Also, video with synchronised underwater audio recordings were captured, allowing to link the acoustic phenomena with specific behaviour of the animals. The vocalisations are categorised into three groups based on differences in acoustic characteristics. Temporal and spectral parameters of the sounds belonging to each group are determined and discussed in terms of potential underlying generation mechanisms. Based on the adopted criteria surface vocalisations do not constitute a separate group but are categorised together with other tonal sounds produced underwater. Other two vocalisation groups include pulsed sounds with different bandwidths, duration times, repetition rates and associated behavioural signatures.

Exposure of the Gulf of St. Lawrence grey seal Halichoerus grypus population to potentially zoonotic infectious agents.

The population of grey seals Halichoerus grypus in Canadian waters is currently used as a commercial source of meat for human consumption. As with domestic livestock, it is important to understand the occurrence in these seals of infectious agents that may be of public health significance and thus ensure appropriate measures are in place to avoid zoonotic transmission. This study examined the prevalence of antibodies against Brucella spp., Erysipelothrix rhusiopathiae, 6 serovars of Leptospira interrogans, and Toxoplasma gondii in 59 grey seals and determined by polymerase chain reaction (PCR) the presence of these potentially zoonotic agents in specific organs and tissues of seropositive animals. The presence of encysted Trichinella spp. larvae was also investigated by digestion of tongue, diaphragm and other muscle samples, but none were detected. Seroprevalence against Brucella spp. and E. rhusiopathiae was low (5 and 3%, respectively). All 59 seals tested had antibodies against L. interrogans, but no carrier of this bacterium was detected by PCR. Seroprevalence against T. gondii was 53%, and DNA of this protozoan was detected by PCR in 11/30 (37%) seropositive animals. Standard sanitary measures mandatory for commercialization of meat products for human consumption should greatly reduce the potential for exposure to these infectious agents. However, special consideration should be given to freezing seal meat for at least 3 d to ensure destruction of tissue cysts of T. gondii.

Campylobacter pinnipediorum subsp. caledonicus and C. pinnipediorum subsp. pinnipediorum recovered from abscesses in pinnipeds.

Campylobacter pinnipediorum was described recently for isolates recovered from pinnipeds. The novel species was further split into 2 subspecies based on host and geography, with C. pinnipediorum subsp. pinnipediorum recovered from otariid seals in California (USA) and C. pinnipediorum subsp. caledonicus recovered from phocid seals in Scotland. We report details of the infections of 7 pinnipeds from which C. pinnipediorum was isolated: C. pinnipediorum subsp. caledonicus was isolated from 2 harbour seals Phoca vitulina and a single grey seal Halichoerus grypus, and C. pinnipediorum subsp. pinnipediorum was isolated from California sea lions Zalophus californianus. Six of the isolates were recovered from samples collected at post-mortem investigation. In 2 of the Scottish seals and in 3 of the California seals, C. pinnipediorum was the sole bacterial isolate recovered from abscesses present and suggests they may have resulted from conspecific or intraspecific bite wounds.

RETROSPECTIVE STUDY OF SURGICAL TREATMENT OF REFRACTIVE OSTEOMYELITIS AND INFECTIOUS ARTHRITIS IN THE FLIPPERS OF SEALS IN THE NETHERLANDS.

Amputation surgery in pinniped rehabilitation centers is a feasible procedure when animals are presented with open fractures, osteomyelitis, and/or infectious arthritis of the flippers that appear to be refractory to medical treatment. From 2011 to 2017, the Sealcentre Pieterburen in The Netherlands admitted 3,775 seals for rehabilitation. Of these, 37 individuals presented clinical and radiologic signs of bone abnormalities indicative of osteomyelitis or infectious arthritis refractory to medical treatment. Seven cases resulted in euthanasia, and 30 cases underwent amputation surgery. The surgical procedure involved amputation of part of a flipper (24; two animals twice) or of a complete flipper (eight). All procedures were done under general anesthesia except one that was performed with local anesthesia, and all 30 animals were released. In two cases, the osteomyelitis presented with the rare Totenlade phenomenon, a sequestrum surrounded by new periosteal bone formation. The purpose of this retrospective study was to evaluate the outcome of the operative treatment of osteomyelitis and infectious arthritis in the flippers of harbor (Phoca vitulina) and grey seals (Halichoerus grypus) during this 6-yr period.

Foraging behaviour of a continental shelf marine predator, the grey seal (Halichoerus grypus), is associated with in situ, subsurface oceanographic conditions

BackgroundThe heterogeneous oceanographic conditions of continental shelf ecosystems result in a three-dimensionally patchy distribution of prey available to upper-trophic level predators. The association of bio-physical conditions with movement patterns of large marine predators has been demonstrated in diverse taxa. However, obtaining subsurface data that are spatio-temporally relevant to the decisions made by benthically-foraging species can be challenging.MethodsBetween 2009 and 2015, grey seals were captured on Sable Island, Nova Scotia, Canada during summer and fall and instrumented with high-resolution archival GPS tags. These tags recorded location data as well as depth (m), temperature (°C), and light level measurements during dives, until animals returned to the haulout site to breed. Hidden Markov models were used to predict apparent foraging along movement tracks for 79 individuals (59 females, 20 males) every 3 h. In situ measurements were used to estimate chlorophyll-a concentration (mg m− 3) and temperature within the upper-water column (50 m) and temperature and depth at the bottom of dives. As chlorophyll-a could only be estimated from 10:00 to 14:00 AST for dive depths ≥50 m, we formulated two generalized linear mixed-effects models to test the association of predicted grey seal behavioural states with oceanographic conditions and phytoplankton biomass: the first representing conditions of the upper-water column likely to influence primary productivity, and a second model including environmental conditions encountered by grey seals at the bottom of dives, when seals were more likely to be foraging.ResultsPredicted grey seal behavioural states were associated with fine-scale chlorophyll-a concentrations and other environmental conditions they encountered across the continental shelf. In the Water Column Model, season had no influence on the probability of observing apparent foraging, but chlorophyll-a, upper-water column temperature, and sex did, with females having a greater probability of foraging than males. In the Bottom Conditions Model, again season had no influence on the probability of apparent foraging, but females were over twice as likely as males to be foraging.ConclusionsThe results of this study highlight the value of in situ measurements of oceanographic properties that can be collected at high temporal resolution by animal-borne data loggers. These data provide insight into how inferred behavioural decisions made by large marine predators, such as the grey seal, may be influenced by fine-scale oceanographic conditions.

Utilizing next-generation sequencing to identify prey DNA in western North Atlantic grey seal Halichoerus grypus diet

Increasing grey sealHalichoerus grypusabundance in coastal New England is leading to social, political, economic, and ecological controversies. Central to these issues is the foraging ecology and diet composition of the seals. We studied grey seal feeding habits through next-generation sequencing of prey DNA using 16S amplicons from seal scat (n = 74) collected from a breeding colony on Monomoy Island in Massachusetts, USA, and report frequency of occurrence and relative read abundance. We also assigned seal sex to scat samples using a revised PCR assay. In contrast to current understanding of grey seal diet from hard parts and fatty acid analysis, we found no significant difference between male and female diet measured by alpha and beta diversity. Overall, we detected 24 prey groups, 18 of which resolved to species. Sand lanceAmmodytesspp. were the most frequently consumed prey group, with a frequency of occurrence (FO) of 97.3%, consistent with previous studies, but Atlantic menhadenBrevoortia tyrannus, the second most frequently consumed species (FO = 60.8%), has not previously been documented in US grey seal diet. Our results suggest that a metabarcoding approach to seal food habits can yield important new ecological insights, but that traditional hard parts analysis does not underestimate consumption of Atlantic codGadus morhua(FO = 6.7%, Gadidae spp.) and salmonSalmo salar(FO = 0%), 2 particularly valuable species of concern.