The accurate computational treatment of polycrystalline materials requires the rigorous generation of grain boundary (GB) structures as many quantities of interest depend strongly on the specifics of the macroscopic and microscopic degrees of freedom (DoFs) used in their creation. In complex materials, containing multiple sublattices and where atomic composition can vary spatially through the system, we introduce a new microscopic DoF based on this compositional variation which we find governs observable properties. In spinel - a wide class of complex oxides where this compositional variation manifests as cation inversion - we exploit this DoF to generate and analyze low-energy microstates of two GBs with three spinel chemistries (FeCr2O4, NiCr2O4 and MgAl2O4). This treatment is found to allow for the co-redistribution of cations at the GBs which acts to modify the spatial charge distribution, defect segregation energy and defect transport through these regions. Additionally, we generate low-energy metastable microstates of the GB system with an induced cation disorder, simulating those which may develop as a result of damage events. These are then analyzed to discover their composition and defect transport properties which depend strongly on the amount of induced damage. We conclude that considering this new DoF is important in describing the properties of GBs in complex materials.
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