Suspended sediment concentration in the Middle Yangtze River (MYR) has reduced sharply below the Three Gorges Dam since 2003, and led to significant channel degradation and riverbed coarsening. However, the complex interaction between riverbed coarsening and sediment transport is essential for channel evolution processes but is poorly understood. This paper presents a one-dimensional model for simulating graded sediment transport when the bed material supply is limited. The model takes account of the effect of bed material composition (BMC) and threshold probability on graded sediment transport, and thus improve the accuracy of recovery coefficient. The modeling results of graded sediment concentrations was calibrated and then satisfactorily verified using field observations in the JingJiang Reach from 2015 to 2016. The results showed bed material composition affect the simulated fine, medium, and coarse sediment concentrations, and the improvements of normalized errors are 17.6%, 45.9%, and 330.7%, respectively. With the BMC effect considered, the recovery factor of fine and medium were far less than coarse sediment in the MYR. In addition, the recovery ratios of medium and coarse sediment concentrations along the MYR were improved by 88.6%-265.4% and 75.1%-105.9% respectively, owing to the bed material supply after the TGD operation; however, there was no significant effect on fine sediment, with a low recovery ratio of 8.3%-8.6%. Therefore, the effect of bed material composition on graded sediment transport and channel evolution needs to be considered for higher simulation accuracy in the MYR.