Gold Junctions Research Articles

Design, fabrication, and calibration of a micromachined thermocouple for biological applications in temperature monitoring

This paper presents a microneedle thermocouple probe designed for temperature measurements in biological samples, addressing a critical need in the field of biology. Fabricated on a Silicon-On-Insulator (SOI) wafer, the probe features a doped silicon (Si)/chrome (Cr)/gold (Au) junction, providing a high Seebeck coefficient, rapid response times, and excellent temperature resolution. The microfabrication process produces a microneedle with a triangular sensing junction. Finite Element Analysis (FEA) was employed to evaluate the thermal time constant and structural integrity in tissue, supporting the probe's suitability for biological applications. Experimental validation included temperature measurements in ex-vivo tissue and live Xenopus laevis oocytes. Notably, intracellular thermogenesis was detected by increasing extracellular potassium concentration to depolarize the oocyte membrane, resulting in a measurable temperature rise. These findings highlight the probe's potential as a robust tool for monitoring temperature variations in biological systems.

The Conductance and Thermopower Behavior of Pendent Trans-Coordinated Palladium(II) Complexes in Single-Molecule Junctions.

The present work provides insight into the effect of connectivity within isomeric 1,2-bis(2-pyridylethynyl)benzene (bpb) palladium complexes on their electron transmission properties within gold|single-molecule|gold junctions. The ligands 2,2'-((4,5-bis(hexyloxy)-1,2-phenylene)bis(ethyne-2,1-diyl))bis(4-(methylthio)pyridine) (Lm ) and 6,6'-((4,5-bis(hexyloxy)-1,2-phenylene)bis(ethyne-2,1-diyl))bis(3-(methylthio)pyridine) (Lp ) were synthesized and coordinated with PdCl2 to give the trans-Pd(Lmorp )Cl2 complexes. X-ray photoelectron spectroscopy (XPS) measurements shed light on the contacting modes of the molecules in the junctions. A combination of scanning tunneling microscopy-break junction (STM-BJ) measurements and density functional theory (DFT) calculations demonstrate that the typical lower conductance of meta- compared with para-connected isomers in a molecular junction was suppressed upon metal coordination. Simultaneously there was a modest increase in both conductance and Seebeck coefficient due to the contraction of the HOMO-LUMO gap upon metal coordination. It is shown that the low Seebeck coefficient is primarily a consequence of how the resonances shift relative to the Fermi energy.

Electronic Conductance and Thermopower of Cross-Conjugated and Skipped-Conjugated Molecules in Single-Molecule Junctions.

We report a combined experimental and theoretical study of a series of thiomethyl (SMe) anchored cross-conjugated molecules featuring an acyclic central bridging ketone and their analogous skipped-conjugated alcohol derivatives. Studies of these molecules in a gold|single-molecule|gold junction using scanning tunneling microscopy-break junction techniques reveal a similar conductance (G) value for both the cross-conjugated molecules and their skipped-conjugated partners. Theoretical studies based on density functional theory of the molecules in their optimum geometries in the junction reveal the reason for this similarity in conductance, as the predicted conductance for the alcohol series of compounds varies more with the tilt angle. Thermopower measurements reveal a higher Seebeck coefficient (S) for the cross-conjugated ketone molecules relative to the alcohol derivatives, with a particularly high S for the biphenyl derivative 3a (-15.6 μV/K), an increase of threefold compared to its alcohol analog. The predicted behavior of the quantum interference (QI) in this series of cross-conjugated molecules is found to be constructive, though the appearance of a destructive QI feature for 3a is due to the degeneracy of the HOMO orbital and may explain the enhancement of the value of S for this molecule.

Does a Blatter Radical Retain Its Open-Shell Character When Incorporated into Gold–Molecule–Gold Junctions?

One of the key issues for the use of organic radicals in high-performance molecular electronic, spintronic and thermoelectric devices is the retention, at room temperature, of their open-shell character when they are in contact with the metal electrodes of a junction. By means of first-principles quantum transport calculations, we have investigated the stability and the electronic transport properties of single-molecule junctions incorporating a Blatter radical (BR) with thiomethyl linker groups. Our calculations suggest that the BR can unequivocally retain its open-shell nature even when bound to gold electrodes through undercoordinated gold adatoms. Such a state cannot be destroyed by the surrounding solvent molecules and the applied bias. The calculated low-bias conductance values of junctions with BR, an oxidized BR derivative, and a closed-shell stilbene molecule are in quantitative agreement with the available experimental measurements. The small conductance of the BR can be associated with the localization of its π-type singly occupied and singly unoccupied molecular orbitals (SOMO and SUMO), leading to an asymmetrically weak electronic coupling to the two gold electrodes, even though these two orbitals lie very close to the Fermi energy. Furthermore, the nonmonotonic modulation of the junction conductance controlled by a charge gate can be used in experiments to further verify the presence of the unpaired electron. This proof may be realized in practice with an electrostatic solid-state or an electrochemical gate. Our findings deepen the current understanding of the radical–metal interfacial properties and facilitate the design of future radical-based multifunctional molecular devices.

Applicability of perturbed matrix method for charge transfer studies at bio/metallic interfaces: a case of azurin.

As the field of nanoelectronics based on biomolecules such as peptides and proteins rapidly grows, there is a need for robust computational methods able to reliably predict charge transfer properties at bio/metallic interfaces. Traditionally, hybrid quantum-mechanical/molecular-mechanical techniques are employed for systems where the electron hopping transfer mechanism is applicable to determine physical parameters controlling the thermodynamics and kinetics of charge transfer processes. However, these approaches are limited by a relatively high computational cost when extensive sampling of a configurational space is required, like in the case of soft biomatter. For these applications, semi-empirical approaches such as the perturbed matrix method (PMM) have been developed and successfully used to study charge-transfer processes in biomolecules. Here, we explore the performance of PMM on prototypical redox-active protein azurin in various environments, from solution to vacuum interfaces with gold surfaces and protein junction. We systematically benchmarked the robustness and convergence of the method with respect to the quantum-centre size, size of the Hamiltonian, number of samples, and level of theory. We show that PMM can adequately capture all the trends associated with the structural and electronic changes related to azurin oxidation at bio/metallic interfaces.

Functionalized electrodes embedded in nanopores: read-out enhancement?

In this review, functionalized nanogaps embedded in nanopores are discussed in view of their high biosensitivity in detecting biomolecules, their length, type, and sequence. Specific focus is given on nanoelectrodes functionalized with tiny nanometer-sized diamond-like particles offering vast functionalization possibilities for gold junction electrodes. This choice of the functionalization, in turn, offers nucleotide-specific binding possibilities improving the detection signals arising from such functionalized electrodes potentially embedded in a nanopore. The review sheds light onto the use and enhancement of the tunnelling recognition in functionalized nanogaps towards sensing DNA nucleotides and mutation detection, providing important input for a practical realization.

Investigation of SERS and Electron Transport Properties of Oligomer Phenylacetyne-3 Trapped in Gold Junctions.

Molecular junctions hold great potential for future microelectronics and attract people’s attention. Here, we used density functional theory calculations (DFT) to investigate the surface-enhanced Raman spectroscopy (SERS) and electron transport properties of fully π-conjugated oligomers (phenylacetylene)-3 (OPE-3) trapped in gold junctions. The effects of charge injection, an applied electric field, and molecular deformation are considered. We found that a new Raman peak located at around 1400 cm−1 appears after the injection of a charge, which agrees well with the experiment. The external electric field and configurational deformation hardly affect the Raman spectra, indicating that the electronic rather than the geometrical structure determines the Raman response. Nonequilibrium Green’s function (NEGF) calculations show that both the rotation of the benzene groups and an increased electrode distance largely reduced the conductivity of the studied molecular junctions. The present investigations provide valuable information on the effect of charging, electric field, and deformation on the SERS and conductivity of molecular junctions, helping the development of molecular devices.

Single-Molecule Charge Transport through Positively Charged Electrostatic Anchors.

The charge transport in single-molecule junctions depends critically on the chemical identity of the anchor groups that are used to connect the molecular wires to the electrodes. In this research, we report a new anchoring strategy, called the electrostatic anchor, formed through the efficient Coulombic interaction between the gold electrodes and the positively charged pyridinium terminal groups. Our results show that these pyridinium groups serve as efficient electrostatic anchors forming robust gold-molecule-gold junctions. We have also observed binary switching in dicationic viologen molecular junctions, demonstrating an electron injection-induced redox switching in single-molecule junctions. We attribute the difference in low- and high-conductance states to a dicationic ground state and a radical cationic metastable state, respectively. Overall, this anchoring strategy and redox-switching mechanism could constitute the basis for a new class of redox-activated single-molecule switches.

Mechanism Study of Molecular Deformation of 2,2',5',2″-Tetramethylated p-Terphenyl-4,4″-dithiol Trapped in Gold Junctions.

Molecular junctions hold great potential for future microelectronics, while the practical utilization has long been limited by the problem of conformational deformation during charge transport. Here we present a first-principles theoretical study on the surface-enhanced Raman spectroscopy (SERS) characterization of the p-terphenyl-4,4″-dithiol molecule and its 2,2',5',2″-tetramethylated analogue in gold junctions to investigate the molecular deformation mechanism. The effects of charge injection and external electric field were examined, both of which could change π-conjugation by varying the dihedral angle between the central and ending rings (DIPT). The induced significant structural deformations then change SERS responses. Only the SERS responses under an external electric field can account for the experimentally observed Raman spectra, and those of charge injections cannot. Moreover, applying a strong electric field could enlarge the conductivities of the two molecular junctions, agreeing well with experiments. This information not only elaborates that the electric field effect constitutes one important mechanism for molecular deformation but also provides useful insights for the control of charge transport in molecular junctions.

Comparative Analysis on Dielectric Gold and Aluminium Triangular Junctions: Impact of Ionic Strength and Background Electrolyte by pH Variations

Field of generating a surface thin film is emerging broadly in sensing applications to obtain the quick and fast results by forming the high-performance sensors. Incorporation of thin film technologies in sensor development for the better sensing could be a promising way to attain the current requirements. This work predominantly delineates the fabrication of the dielectric sensor using two different sensing materials (Gold and Aluminium). Conventional photolithography was carried out using silicon as a base material and the photo mask of the dielectric sensor was designed by AutoCAD software. The physical characterization of the fabricated sensor was done by Scanning Electron Microscope, Atomic Force Microscope, High Power Microscope and 3D-nano profiler. The electrical characterization was performed using Keithley 6487 picoammeter with a linear sweep voltage of 0 to 2 V at 0.01 V step voltage. By pH scouting, I-V measurements on the bare sensor were carried out, whereby the gold electrodes conducts a least current than aluminium dielectrodes. Comparative analysis with pH scouting reveals that gold electrode is suitable under varied ionic strengths and background electrolytes, whereas aluminium electrodes were affected by the extreme acid (pH 1) and alkali (pH 12) solutions.

Connectivity dependent thermopower of bridged biphenyl molecules in single-molecule junctions.

We report measurements on gold|single-molecule|gold junctions, using a modified scanning tunneling microscope-break junction (STM-BJ) technique, of the Seebeck coefficient and electrical conductance of a series of bridged biphenyl molecules, with meta connectivities to pyridyl anchor groups. These data are compared with a previously reported study of para-connected analogues. In agreement with a tight binding model, the electrical conductance of the meta series is relatively low and is sensitive to the nature of the bridging groups, whereas in the para case the conductance is higher and relatively insensitive to the presence of the bridging groups. This difference in sensitivity arises from the presence of destructive quantum interference in the π system of the unbridged aromatic core, which is alleviated to different degrees by the presence of bridging groups. More precisely, the Seebeck coefficient of meta-connected molecules was found to vary between -6.1 μV K-1 and -14.1 μV K-1, whereas that of the para-connected molecules varied from -5.5 μV K-1 and -9.0 μV K-1.

Single-molecule quantum-transport phenomena in break junctions

Single-molecule junctions — devices in which a single molecule is electrically connected by two electrodes — enable the study of a broad range of quantum-transport phenomena even at room temperature. These quantum features are related to molecular orbital and spin degrees of freedom and are characterized by various energy scales that can be chemically and physically tuned: level spacings, charging energies, tunnel couplings, exchange energies, vibrational energies and Kondo correlation energies. The competition between these different energy scales leads to a rich variety of processes, which researchers are now starting to be able to control and tune experimentally. In this Technical Review, we present the status of the molecular electronics field from this quantum-transport perspective with a focus on recent experimental results obtained using break-junction devices, including scanning probe and mechanically controlled break junctions, as well as electromigrated gold and graphene break junctions.

Atomic rheology of gold nanojunctions.

Despite extensive investigations of dissipation and deformation processes in micro- and nano-sized metallic samples1-7, the mechanisms at play during the deformation of systems with ultimate (molecular) size remain unknown. Although metallic nanojunctions, which are obtained by stretching metallic wires down to the atomic level, are typically used to explore atomic-scale contacts5,8-11, it has not been possible until now to determine the full equilibrium and non-equilibrium rheological flow properties of matter at such scales. Here, by using an atomic-force microscope equipped with a quartz tuning fork, we combine electrical and rheological measurements on ångström-size gold junctions to study the non-linear rheology of this model atomic system. By subjecting the junction to increasing subnanometric deformations we observe a transition from a purely elastic regime to a plastic one, and eventually to a viscous-like fluidized regime, similar to the rheology of soft yielding materials12-14, although orders of magnitude different in length scale. The fluidized state furthermore exhibits capillary attraction, as expected for liquid capillary bridges. This shear fluidization cannot be captured by classical models of friction between atomic planes15,16 and points to an unexpected dissipative behaviour of defect-free metallic junctions at ultimate scales. Atomic rheology is therefore a powerful tool that can be used to probe the structural reorganization of atomic contacts.

Thermoelectric Properties of 2,7-Dipyridylfluorene Derivatives in Single-Molecule Junctions.

A series of 2,7-dipyridylfluorene derivatives have been synthesized with different substituents (2H, 2Me, 2OMe, 2CF3, and O) at the C(9) position. Experimental measurements on gold|single-molecule|gold junctions, using a modified scanning tunneling microscope-break-junction technique, show that the C(9) substituent has little effect on the conductance, although there is a more significant influence on the thermopower, with the Seebeck coefficient varying by a factor of 1.65 within the series. The combined experimental and computational study, using density functional theory calculations, provides insights into the interplay of conductance and thermopower in single-molecule junctions and is a guide for new strategies for thermopower modulation in single-molecule junctions.

29pPSB-23 金接合系の構造と表面原子拡散(29pPSB 領域9ポスターセッション,領域9(表面・界面,結晶成長))

29pPSB-23 金接合系の構造と表面原子拡散(29pPSB 領域9ポスターセッション,領域9(表面・界面,結晶成長))

Peltier cooling in molecular junctions.

The study of thermoelectricity in molecular junctions is of fundamental interest for the development of various technologies including cooling (refrigeration) and heat-to-electricity conversion 1-4 . Recent experimental progress in probing the thermopower (Seebeck effect) of molecular junctions 5-9 has enabled studies of the relationship between thermoelectricity and molecular structure 10,11 . However, observations of Peltier cooling in molecular junctions-a critical step for establishing molecular-based refrigeration-have remained inaccessible. Here, we report direct experimental observations of Peltier cooling in molecular junctions. By integrating conducting-probe atomic force microscopy 12,13 with custom-fabricated picowatt-resolution calorimetric microdevices, we created an experimental platform that enables the unified characterization of electrical, thermoelectric and energy dissipation characteristics of molecular junctions. Using this platform, we studied gold junctions with prototypical molecules (Au-biphenyl-4,4'-dithiol-Au, Au-terphenyl-4,4''-dithiol-Au and Au-4,4'-bipyridine-Au) and revealed the relationship between heating or cooling and charge transmission characteristics. Our experimental conclusions are supported by self-energy-corrected density functional theory calculations. We expect these advances to stimulate studies of both thermal and thermoelectric transport in molecular junctions where the possibility of extraordinarily efficient energy conversion has been theoretically predicted 2-4,14 .

Many-body correlations and coupling in benzene-dithiol junctions

Most theoretical studies of nanoscale transport in molecular junctions rely on the combination of the Landauer formalism with Kohn-Sham density functional theory (DFT) using standard local and semilocal functionals to approximate exchange and correlation effects. In many cases, the resulting conductance is overestimated with respect to experiments. Recent works have demonstrated that this discrepancy may be reduced when including many-body corrections on top of DFT. Here we study benzene-dithiol (BDT) gold junctions and analyze the effect of many-body perturbation theory (MBPT) on the calculation of the conductance with respect to different bonding geometries. We find that the many-body corrections to the conductance strongly depend on the metal-molecule coupling strength. In the BDT junction with the lowest coupling, many-body corrections reduce the overestimation on the conductance to a factor two, improving the agreement with experiments. In contrast, in the strongest coupling cases, many-body corrections on the conductance are found to be sensibly smaller and standard DFT reveals a valid approach.

Graphene as a Promising Electrode for Low-Current Attenuation in Nonsymmetric Molecular Junctions.

We have measured the single-molecule conductance of 1,n-alkanedithiol molecular bridges (n = 4, 6, 8, 10, 12) on a graphene substrate using scanning tunneling microscopy (STM)-formed electrical junctions. The conductance values of this homologous series ranged from 2.3 nS (n = 12) to 53 nS (n = 4), with a decay constant βn of 0.40 per methylene (-CH2) group. This result is explained by a combination of density functional theory (DFT) and Keldysh-Green function calculations. The obtained decay, which is much lower than the one obtained for symmetric gold junctions, is related to the weak coupling at the molecule-graphene interface and the electronic structure of graphene. As a consequence, we show that using graphene nonsymmetric junctions and appropriate anchoring groups may lead to a much-lower decay constant and more-conductive molecular junctions at longer lengths.

Effect of anchoring atom and electrostatic gating on the electronic transport properties in single molecular electronic devices

The effect of anchoring atom and electrostatic gate on the electron transport through gated thiophene single molecular device is studied by utilizing non-equilibrium Green’s function coupled with self-consistent extended Huckel theory. Gated gold–molecule–gold junctions are built using thiophene (Tp) molecule as functional component and sulphur (S) and selenium (Se) as anchoring atoms in field effect transistor (FET) configuration. The electron transport analysis of the gated thiophene single molecular device is investigated through the current–voltage and the electron transmission spectra. The results show that the anchoring atoms modulate the transport nature of these devices in a controlled manner. We find that the S–Tp–S device produces larger current than Se–Tp–Se device. Also we studied the effect of electrostatic gating on S–Tp–S and Se–Tp–Se device. We find that, positive bias or negative bias for Vg, will correspondingly, raise or lower the transmission coefficients T(E) in relation to the Fermi level (EF) for both the devices. Our results show that magnitude of Isd current varies more than one order for same Vsd over different Vg bias for S–Tp–S device, whereas for Se–Tp–Se device Isd current varies more than five times for same Vsd over different Vg bias. Se–Tp–Se device shows gate controlled NDR behavior. Finally, we demonstrated the application of using thiophene based single molecular FET to realize five basic logic gates very low Vsd bias. The key feature of the suggested design is the opportunity of demonstrating various logic gates with just one molecular unit transistor and demonstrated at very low Vsd bias.

Theoretical Study of Quantum Conductance of Conjugated and Nonconjugated Molecular Wire Junctions

Electron transport through molecular junctions has been widely investigated experimentally and theoretically. Unfortunately, there exists discrepancy on the single molecular conductance between theoretical calculations and experimental measurements. In this paper, first-principle density functional theory combined with nonequilibrium Green’s function approach is employed; we studied electronic structures, molecular lengths, and interfacial interactions of three kinds of molecular junctions, alkanedithiols, oligo(1,4-phenylene-ethynylene)s, and 1,4-benzene-di(n-alkylthiol) (BDnT), embedding in nanogaps of gold electrodes. First, our approach can accurately describe the binding interaction between the thiol group and gold electrode so that the conductance of alkanedithiol in a gold junction can be well predicted. We found that a previous underestimation of HOMO–LUMO gaps in the junction system leads to the overestimated conductance for conjugate molecules with sulfur atoms binding to gold electrodes. In the...