Global Nutrient Cycles Research Articles

Effects of temporal, spatial, and environmental factors on ciliates community in northeastern South China Sea, with notes on co-occurrence patterns of environment, phytoplankton, and ciliate.

Ciliates are important components of microplanktons and play a crucial role in global nutrient cycling. There is still large knowledge gap on their structuring mechanisms from continental shelf to deep basin. We revealed the distribution patterns of ciliate community in neSCS and assessed the relative contribution of temporal, spatial, and environmental factors for their community structuring. Compared with temp-spatial factors, environmental factors take more responsibilities for the ciliate distribution. Among the environmental factors, physical factors showed the largest contribution to community variation. Moreover, the ciliate-environment co-occurrence pattern showed that physical factors contributed more for their relationships. These findings suggested that the physical processes play key roles in temp-spatial dynamics of ciliate community in open ocean.

Mixotrophic protists and ecological stoichiometry: connecting homeostasis and nutrient limitation from organisms to communities

In recent decades, there has been a growing recognition that mixotrophy, the ability to utilize both phototrophy and phagotrophy, is more common among plankton than previously assumed. Even though mixotrophs can become highly abundant, especially under nutrient limitation, and significantly alter nutrient cycling and food-web dynamics due to their dual nutritional modes, a comprehensive synthesis from a stoichiometric perspective is still lacking. We conducted a systematic literature review in which we identified over 130 studies that directly relate nutrient ratios to mixotrophic protists at the organism to community scale. By conceptually linking mixotrophy with the concept of ecological stoichiometry, we provide insights into (1) the role of mixotrophic metabolism and nutrient limitation in regulating cellular homeostasis, (2) mixotroph abundance and community scale responses to nutrient limitation, and (3) the specific case of harmful algal bloom forming mixotrophs. On the organism scale, the existing literature points towards a stabilizing effect of mixotrophic metabolism on elemental composition, and the use of grazing as a compensation mechanism under stoichiometric imbalances in the water and prey. At the community scale, mixotrophs were found to increase in abundance relative to strict autotrophs and heterotrophs in nutrient-limited communities, and provide beneficial food for zooplankton grazers by maintaining relatively low and stable stoichiometry. Furthermore, global-scale models and studies of harmful algal blooms reveal the increasing importance of mixotrophs under climate change – highlighting the need for continued research addressing the interactions between mixotrophs and dynamic stoichiometry to understand the impacts of mixotrophs on global nutrient cycles.

Transcriptomic analyses of bacterial growth on fungal necromass reveal different microbial community niches during degradation.

Bacteria are major drivers of organic matter decomposition and play crucial roles in global nutrient cycling. Although the degradation of dead fungal biomass (necromass) is increasingly recognized as an important contributor to soil carbon (C) and nitrogen (N) cycling, the genes and metabolic pathways involved in necromass degradation are less characterized. In particular, how bacteria degrade necromass containing different quantities of melanin, which largely control rates of necromass decomposition in situ, is largely unknown. To address this gap, we conducted a multi-timepoint transcriptomic analysis using three Gram-negative, bacterial species grown on low or high melanin necromass of Hyaloscypha bicolor. The bacterial species, Cellvibrio japonicus, Chitinophaga pinensis, and Serratia marcescens, belong to genera known to degrade necromass in situ. We found that while bacterial growth was consistently higher on low than high melanin necromass, the CAZyme-encoding gene expression response of the three species was similar between the two necromass types. Interestingly, this trend was not shared for genes encoding nitrogen utilization, which varied in C. pinensis and S. marcescens during growth on high vs low melanin necromass. Additionally, this study tested the metabolic capabilities of these bacterial species to grow on a diversity of C and N sources and found that the three bacteria have substantially different utilization patterns. Collectively, our data suggest that as necromass changes chemically over the course of degradation, certain bacterial species are favored based on their differential metabolic capacities.IMPORTANCEFungal necromass is a major component of the carbon (C) in soils as well as an important source of nitrogen (N) for plant and microbial growth. Bacteria associated with necromass represent a distinct subset of the soil microbiome and characterizing their functional capacities is the critical next step toward understanding how they influence necromass turnover. This is particularly important for necromass varying in melanin content, which has been observed to control the rate of necromass decomposition across a variety of ecosystems. Here we assessed the gene expression of three necromass-degrading bacteria grown on low or high melanin necromass and characterized their metabolic capacities to grow on different C and N substrates. These transcriptomic and metabolic studies provide the first steps toward assessing the physiological relevance of up-regulated CAZyme-encoding genes in necromass decomposition and provide foundational data for generating a predictive model of the molecular mechanisms underpinning necromass decomposition by soil bacteria.

The importance of source data in river network connectivity modeling: A review

AbstractRiver network connectivity (RC) describes the hydrologic exchange of water, nutrients, sediments, and pollutants between the river channel and other “sites” via heterogenous flowpaths along the river corridor. As water moves downstream it carries these constituents, creating a stream‐to‐ocean continuum of connectivity that regulates global water, carbon, and nutrient cycling. River network connectivity models have developed over many decades, culminating in recent years with network‐scale RC models that explicitly simulate the transport and exchange of water and elements from headwaters to coasts, sometimes requiring models to contain tens of millions of river reaches. These advances provide transformative insights into the aggregate effects of RC on water and material transport across scales from local to global. Yet, recent reviews have pointed to several challenges that need to be overcome to continue advancing network‐scale RC modeling. In service of these goals, I summarize recent network‐scale RC maps and models to identify similarities and differences across the large‐scale RC modeling landscape. Although our computational and upscaling abilities have significantly improved and have revealed new insights, current models are still limited by the quantity, quality, resolution, and lack of standardization of the available in situ databases and source data maps necessary for the modeling. This suggests that we can extend recent advances if we keep improving these source datasets, while continuously revisiting our physics and theory to explain those new data. In doing so, we will continue to expand the role of network‐scale RC models in informing water quality modeling and management into the future.

Global patterns and controlling factors of tree bark C : N : P stoichiometry in forest ecosystems consistent with biogeochemical niche hypothesis.

Bark serves crucial roles in safeguarding trees physically and chemically, while also contributing to nutrient cycling and carbon sequestration. Despite its importance, the broader biogeographical patterns and the potential factors influencing bark C : N : P stoichiometry in forest ecosystems remain largely unknown. In this study, we compiled a comprehensive dataset comprising carbon (C), nitrogen (N), and phosphorus (P) concentrations in bark with 1240 records from 550 diverse forest sites to systematically analyze the large-scale patterns and the factors controlling bark C : N : P stoichiometry. The geometric means of bark C, N, and P concentrations were found to be 493.17 ± 1.75, 3.91 ± 0.09, and 0.2 ± 0.01 mg g-1, respectively. Correspondingly, the C : N, C : P, and N : P mass ratios were 135.51 ± 8.11, 3313.19 ± 210.16, and 19.16 ± 0.6, respectively. Bark C : N : P stoichiometry exhibited conspicuous latitudinal trends, with the exception of N : P ratios. These patterns were primarily shaped by the significant impacts of climate, soil conditions, and plant functional groups. However, the impact of evolutionary history in shaping bark C : N : P stoichiometry outweigh climate, soil, and plant functional group, aligning with the biogeochemical niche (BN) hypothesis. These finding enhance our understanding of the spatial distribution of bark nutrient stoichiometry and have important implications for modeling of global forest ecosystem nutrient cycles in a changing environment.

Influence of submarine groundwater discharge on the nutrient dynamics of a fringing-reef lagoon

Study regionThis study investigates nutrient distribution and flux dynamics in a coral reef lagoon in Quintana Roo, Mexico, located on a permeable limestone coast of the Mesoamerican Barrier Reef System. Study FocusEmphasis is placed on submarine groundwater discharge (SGD) as a crucial contributor to nutrient pathways, including ammonium (NH4+), nitrate and nitrite (NOx-), hydrogen silicate (HSiO3-), hydrogen phosphate (HPO42-), and urea. Inputs vary with SGD magnitudes and sources and by proximity to active spring discharges. Groundwater multi-tracer analysis and multiple linear regression identify 226Ra as explaining NH4+ variability due to long-term groundwater processes, while 223Ra predicts NOx-, HSiO3-, and urea due to short-term inputs. No significant relationship was found between HPO42- and any radium isotope, indicating complex behavior in coastal karst aquifers. New hydrological insights for the regionThe findings highlight complex nutrient dynamics in coastal karst settings, with SGD-derived fluxes primarily consisting of dissolved inorganic nitrogen (DIN) and HSiO3-. Although lower in concentration, HPO42- and urea fluxes are significant compared to other karst environments. Radium isotopes distinguish between short-term and long-term, as well as new and recycled nutrient inputs. Groundwater inputs transport fresh nutrients to healthier reefs, whereas processed, recycled inputs were detected near degraded reefs. These insights are essential for understanding global nutrient cycles and coral health, particularly in the context of global change and anthropogenic disturbances affecting coral reef ecosystems.

Spatial and environmental drivers of temperate estuarine archaeal communities

Archaea play a crucial role in the global biogeochemical cycling of elements and nutrients, helping to maintain the functional stability of estuarine systems. This study characterised the abundance and diversity of archaeal communities and identified the environmental conditions shaping these microbial communities within six temperate estuaries along approximately 500 km of the New South Wales coastline, Australia. Estuarine sediments were found to exhibit significantly higher species richness than planktonic communities, with representative sequences from the Crenarchaeota phylum characterising each environment. Ordinate analyses revealed catchment characteristics as the strongest drivers of community variability. Our results also provide evidence supporting distance-decay patterns of archaeal biogeography across intermediate scales within and between temperate estuaries, contributing to a growing body of evidence revealing the extent spatial scales play in shaping microbial communities. This study expands our understanding of microbial diversity in temperate estuaries, with a specific focus on archaeal community structure and their role in maintaining ecosystem stability.

Creating sustainable capacity for river science in the Congo basin through the CRuHM project.

In this article, we examine the scientific and sustainable research capacity outcomes of the 'Congo River: user Hydraulics and Morphology' or CRuHM project, a six-year effort supported by the Royal Society's Africa Capacity Building Initiative. This project brought together a consortium of African and UK universities to undertake the first large-scale scientific expeditions to the Congo basin of the modern era in order to better understand the hydraulics and geomorphology of this understudied but globally important river. The river is essential for navigation, irrigation, drinking water and hydroelectric power generation for the 10 basin countries and is critically important for biodiversity and global nutrient, carbon and climatological cycles. This article summarizes the new scientific understanding contributed by the project and the steps taken to ensure a meaningful legacy that would continue long beyond the finite lifetime of available funding. Actions taken to achieve this include establishing a new hydrology research centre at the University of Kinshasa as well as steps to build a wider international community of Congo basin researchers. In this way, we hope to build momentum for future funding initiatives and collaboration.

Soil biodiversity is essential for building environmental resilience

Soil biodiversity is essential for building environmental resilience The School of Agriculture and Environment and Institute of Agriculture at the University of Western Australia recognise the importance of soil biodiversity in managing soil conditions and building resilience against environmental changes. Soil is a biodiversity ‘hotspot.’ The diversity of organisms in soil is even greater than that found in above-ground ecosystems. Soil biodiversity is dictated by its surroundings, and the communities present comprise groups of organisms that are interdependent. Indeed, soil organisms are represented in all six Kingdoms (Monera, Archaea, Protista, Fungi, Animalia, and Plantae) and fulfill key roles in important processes relevant to soil health, including those that regulate global nutrient and climate cycles.

Environmental conditions play a key role in controlling the composition and diversity of Colombian biocrust microbiomes.

Drylands soils worldwide are naturally colonized by microbial communities known as biocrusts. These soil microbiomes render important ecosystem services associated with soil fertility, water holding capacity, and stability to the areas they cover. Because of the importance of biocrusts in the global cycling of nutrients, there is a growing interest in describing the many microbial configurations these communities display worldwide. However, comprehensive 16S rRNA genes surveys of biocrust communities do not exist for much of the planet: for example, in the continents of South America and the northern part of Africa. The absence of a global understanding of biocrust biodiversity has lead us to assign a general importance to community members that may, in fact, be regional. Here we report for the first time the presence of biocrusts in Colombia (South America) through 16S rRNA genes surveys across an arid, a semi-arid and a dry subtropical region within the country. Our results constitute the first glance of the Bacterial/Archaeal communities associated with South American biocrust microbiomes. Communities where cyanobacteria other than Microcoleus vaginatus prevail, despite the latter being considered a key species elsewhere, illustrate differentiable results in these surveys. We also find that the coastal biocrust communities in Colombia include halo-tolerant and halophilic species, and that niche preference of some nitrogen fixing organisms deviate from previously described global trends. In addition, we identified a high proportion (ranging from 5 to 70%, in average) of cyanobacterial sequences that did not match any formally described cyanobacterial species. Our investigation of Colombian biocrusts points to highly diverse communities with climatic regions controlling taxonomic configurations. They also highlight an extensive local diversity to be discovered which is central to better design management and restoration strategies for drylands soils currently undergoing disturbances due to land use and global warming. Finally, this field study highlights the need for an improved mechanistic understanding of the response of key biocrust community members to changes in moisture and temperature.

Uranium Isotope Constraints on the Pre‐Deposition Time of Asian Dust to the North Pacific Ocean: Implications for Provenance and Iron Supply

AbstractAsian dust delivers highly reactive iron (FeHR) to the Pacific Ocean, affecting marine biogeochemical cycles and Earth's climate. Tracing the source of dust deposited in the Pacific is vital for assessing global nutrient cycles but poses challenges. This work applies the (234U/238U) activity ratio to determine the pre‐deposition time and provenance of dust in North Pacific Ocean sediments (Ocean Drilling Program site 1209B). Results indicate a consistent dust pre‐deposition time (134 ± 10 ka) over the past 300,000 years, except during Marine Isotope Stage 7 when volcanic ash input shortened it to 31 ± 19 ka. Comparing the dust pre‐deposition times to those of the potential source deserts, we identify the dust transported to the North Pacific Ocean was primarily from the Taklamakan Desert, which contains higher FeHR content than other deserts. This finding enhances our understanding of soluble Fe supplied to the oceans, especially in dust circulation models.

Soil adsorption potential: Harnessing Earth's living skin for mitigating climate change and greenhouse gas dynamics

Soil adsorption, which could be seen as a crucial ecosystem service, plays a pivotal role in regulating environmental quality and climate dynamics. However, despite its significance, it is often undervalued within the realms of research and policy frameworks. This article delves into the multifaceted aspects of soil adsorption, incorporating insights from chemistry and material science, ecological perspectives, and recent advancements in the field. In exploring soil components and their adsorption capacities, the review highlights how organic and inorganic constituents orchestrate soil's aptitude for pollutant mitigation and nutrient retention/release. Innovative materials and technologies such as biochar are evaluated for their efficacy in enhancing these natural processes, drawing a link with the sustainability of agricultural systems. The symbiosis between soil microbial diversity and adsorption mechanisms is examined, emphasizing the potential for leveraging this interaction to bolster soil health and resilience. The impact of soil adsorption on global nutrient cycles and water quality underscores the environmental implications, portraying it as a sentinel in the face of escalating anthropogenic activities. The complex interplay between soil adsorption mechanisms and climate change is elaborated, identifying research gaps and advocating for future investigations to elucidate the dynamics underpinning this relation. Policy and socioeconomic aspects form a crucial counterpart to the scientific discourse, with the review assessing how effective governance, incentivization, and community engagement are essential for translating soil adsorption's functionality into tangible climate change mitigation and sustainable land-use strategies. Integrating these diverse but interconnected strata, the article presents a comprehensive overview that not only charts the current state of soil adsorption research but also casts a vision for its future trajectory. It calls for an integrated approach combining scientific inquiry, technological innovation, and proactive policy to leverage soil adsorption's full potential to address environmental challenges and catalyze a transition towards a more sustainable and resilient future.

Rewilding soil and litter invertebrates and fungi increases decomposition rates and alters detritivore communities.

Habitat degradation and associated reductions in ecosystem functions can be reversed by reintroducing or 'rewilding' keystone species. Rewilding projects have historically targeted restoration of processes such as grazing regimes or top-down predation effects. Few projects focus on restoring decomposition efficiency, despite the pivotal role decomposition plays in global carbon sequestration and nutrient cycling. Here, we tested whether rewilding entire communities of detritivorous invertebrates and fungi can improve litter decomposition efficiency and restore detritivore communities during ecological restoration. Rewilding was conducted by transplanting leaf litter and soil, including associated invertebrate and fungal communities from species-rich remnant sites into species-poor, and geographically isolated, revegetated farmland sites in a temperate woodland region of southeastern Australia. We compared communities in sites under the following treatments: remnant (conservation area and source of litter transplant), rewilded revegetation (revegetated farmland site with litter transplant) and control revegetation (revegetated site, no transplant). In one 'before' and three 'after' sampling periods, we measured litter decomposition and the abundance and diversity of detritivorous invertebrates and fungi. We quantified the effect of detritivores on the rate of litter decomposition using piecewise Structural Equation Modelling. Decomposition was significantly faster in rewilding sites than in both control and remnant areas and was largely driven by a greater abundance of invertebrate detritivores. Similarly, the abundance of invertebrate detritivores in rewilding revegetation sites exceeded the level of remnant communities, whereas there was little difference between control and remnant sites. In contrast, rewilding did not increase saprotrophic fungi relative abundance/diversity and there was no strong relationship between decomposition and fungal diversity. Our findings suggest the relatively simple act of transplanting leaf litter and soil can increase functional efficiency during restoration and alter community composition. Our methods may prove important across a range of contexts where other restoration methods have failed to restore ecosystem processes to pre-degradation levels.

Ubiquitous filter feeders shape open ocean microbial community structure and function.

The mechanism of mortality plays a large role in how microorganisms in the open ocean contribute to global energy and nutrient cycling. Salps are ubiquitous pelagic tunicates that are a well-known mortality source for large phototrophic microorganisms in coastal and high-latitude systems, but their impact on the immense populations of smaller prokaryotes in the tropical and subtropical open ocean gyres is not well quantified. We used robustly quantitative techniques to measure salp clearance and enrichment of specific microbial functional groups in the North Pacific Subtropical Gyre, one of the largest ecosystems on Earth. We discovered that salps are a previously unknown predator of the globally abundant nitrogen fixer Crocosphaera; thus, salps restrain new nitrogen delivery to the marine ecosystem. We show that the ocean's two numerically dominant cells, Prochlorococcus and SAR11, are not consumed by salps, which offers a new explanation for the dominance of small cells in open ocean systems. We also identified a double bonus for Prochlorococcus, wherein it not only escapes salp predation but the salps also remove one of its major mixotrophic predators, the prymnesiophyte Chrysochromulina. When we modeled the interaction between salp mesh and particles, we found that cell size alone could not account for these prey selection patterns. Instead, the results suggest that alternative mechanisms, such as surface property, shape, nutritional quality, or even prey behavior, determine which microbial cells are consumed by salps. Together, these results identify salps as a major factor in shaping the structure, function, and ecology of open ocean microbial communities.

Cell-to-cell heterogeneity drives host-virus coexistence in a bloom-forming alga.

Algal blooms drive global biogeochemical cycles of key nutrients and serve as hotspots for biological interactions in the ocean. The massive blooms of the cosmopolitan coccolithophore Emiliania huxleyi are often infected by the lytic E. huxleyi virus, which is a major mortality agent triggering bloom demise. This multi-annual "boom and bust" pattern of E. huxleyi blooms suggests that coexistence is essential for these host-virus dynamics. To investigate host-virus coexistence, we developed a new model system from an E. huxleyi culture that recovered from viral infection. The recovered population coexists with the virus, as host cells continue to divide in parallel to viral production. By applying single-molecule fluorescence in situ hybridization (smFISH) to quantify the fraction of infected cells, and assessing infection-specific lipid biomarkers, we identified a small subpopulation of cells that were infected and produced new virions, whereas most of the host population could resist infection. To further assess population heterogeneity, we generated clonal strain collections using single-cell sorting and subsequently phenotyped their susceptibility to E. huxleyi virus infection. This unraveled substantial cell-to-cell heterogeneity across a continuum of susceptibility to resistance, highlighting that infection outcome may vary depending on the individual cell. These results add a new dimension to our understanding of the complexity of host-virus interactions that are commonly assessed in bulk and described by binary definitions of resistance or susceptibility. We propose that phenotypic heterogeneity drives the host-virus coexistence and demonstrate how the coexistence with a lytic virus provides an ecological advantage for the host by killing competing strains.

Divergent Fate and Roles of Dissolved Organic Matter from Spatially Varied Grassland Soils in China During Long-Term Biogeochemical Processes.

Terrestrial dissolved organic matter (DOM) is critical to global carbon and nutrient cycling, climate change, and human health. However, how the spatial and compositional differences of soil DOM affect its dynamics and fate in water during the carbon cycle is largely unclear. Herein, the biodegradation of DOM from 14 spatially distributed grassland soils in China with diverse organic composition was investigated by 165 days of incubation experiments. The results showed that although the high humified fraction (high-HS) regions were featured by high humic-like fractions of 4-25 kDa molecular weight, especially the abundant condensed aromatics and tannins, they unexpectedly displayed greater DOM degradation during 45-165 days. In contrast, the unique proteinaceous and 25-100 kDa fractions enriched in the low humified fraction (low-HS) regions were drastically depleted and improved the decay of bulk DOM but only during 0-45 days. Together, DOM from the high-HS regions would cause lower CO2 outgassing to the atmosphere but higher organic loads for drinking water production in the short term than that from the low-HS regions. However, this would be reversed for the two regions during the long-term transformation processes. These findings highlight the importance of spatial and temporal variability of DOM biogeochemistry to mitigate the negative impacts of grassland soil DOM on climate, waters, and humans.

Spatiotemporal high-resolution mapping of biological production in the Southern Ocean

The Southern Ocean is considered to play an important role in the global biogeochemical cycles of carbon and nutrients. It is still unclear how biological production there impacts climate change owing to the remarkable gap between the current and the ideal state of research. Here, we proposed a new concept of combining Neural Network based parameterization of dissolved inorganic carbon with Biogeochemical Argo floats, showing simultaneously spatiotemporal distributions of net community production and resupply of carbon from the deep ocean based on the dissolved inorganic carbon change. It indicated a total net community production of 4.1 ± 0.3 Pg-C year−1 over the Southern Ocean, which accounts for 45% of global annual oceanic carbon export and is 20% higher than the previous estimates. Furthermore, net community production in the Southern Ocean has decreased by 0.8% year−1 since the 2010s, indicating that it may be contributing as positive feedback to global warming.

Viruses under the Antarctic Ice Shelf are active and potentially involved in global nutrient cycles

Viruses play an important role in the marine ecosystem. However, our comprehension of viruses inhabiting the dark ocean, and in particular, under the Antarctic Ice Shelves, remains limited. Here, we mine single-cell genomic, transcriptomic, and metagenomic data to uncover the viral diversity, biogeography, activity, and their role as metabolic facilitators of microbes beneath the Ross Ice Shelf. This is the largest Antarctic ice shelf with a major impact on global carbon cycle. The viral community found in the cavity under the ice shelf mainly comprises endemic viruses adapted to polar and mesopelagic environments. The low abundance of genes related to lysogenic lifestyle (<3%) does not support a predominance of the Piggyback-the-Winner hypothesis, consistent with a low-productivity habitat. Our results indicate a viral community actively infecting key ammonium and sulfur-oxidizing chemolithoautotrophs (e.g. Nitrosopumilus spp, Thioglobus spp.), supporting a “kill-the-winner” dynamic. Based on genome analysis, these viruses carry specific auxiliary metabolic genes potentially involved in nitrogen, sulfur, and phosphorus acquisition. Altogether, the viruses under Antarctic ice shelves are putatively involved in programming the metabolism of ecologically relevant microbes that maintain primary production in these chemosynthetically-driven ecosystems, which have a major role in global nutrient cycles.

Improving litter nutrients import/export modeling in a forested watershed through enhanced forest growth representation

Nutrient release from litter significantly contributes to the global nutrient cycle and the nutritional status of river systems. Simulating the diffuse nutrients from litterfall at the watershed scale is extremely uncertain, owing partly to a lack of measurements covering a variety of features and underlying terrain and insufficient modeling methods. We quantified annual litter production (ALP) simulation at the basin and sub-basin scales by improving the Soil and Water Assessment Tool (SWAT) for forest nutrient cycling, including the forest growth module, tree biomass accumulation, and parametrization scheme. The modified model was comprehensively constrained and calibrated for tree biomass, ALP, monthly dynamics of nutrient mineralization, monthly stream flow, sediment yield, nitrate nitrogen (NO3-N), dissolved organic nitrogen (DON), and total phosphorus (TP) in the Tumen River Basin (TRB). Results showed that the modified SWAT increases the ALP simulation from 132.13 ± 21.73 g/m2 to 351.88 ± 18.28 g/m2 and the relative error of spatial ALP decreased from −50.65 %∼66.59 % to −11.18 %∼27.62 %. The accuracy of nitrate improved notably (coefficient of determination (R2) increased by 0.2–0.25, Nash-Sutcliffe Efficiency (NSE) increased by 0.09–0.19), and that of runoff simulation improved modestly (R2 increased by 0.05 and NSE increased by 0.08 for validation period). A comparison with the original simulation of nutrient dynamics also indicated that the modified SWAT model could reasonably identify the dynamics and interactions between litter nutrients and climate factors. Increased mineralization caused by warming and snow melting in spring is the main factor contributing to nitrate accumulation and soluble phosphorus (soluble P) loss in the soil. Improved forest nutrient cycles are expected to help enhance future applications of SWAT for investigating the biogeochemical consequences of climate change.

Mutualism reduces the severity of gene disruptions in predictable ways across microbial communities

Predicting evolution in microbial communities is critical for problems from human health to global nutrient cycling. Understanding how species interactions impact the distribution of fitness effects for a focal population would enhance our ability to predict evolution. Specifically, does the type of ecological interaction, such as mutualism or competition, change the average effect of a mutation (i.e., the mean of the distribution of fitness effects)? Furthermore, how often does increasing community complexity alter the impact of species interactions on mutant fitness? To address these questions, we created a transposon mutant library in Salmonella enterica and measured the fitness of loss of function mutations in 3,550 genes when grown alone versus competitive co-culture or mutualistic co-culture with Escherichia coli and Methylorubrum extorquens. We found that mutualism reduces the average impact of mutations, while competition had no effect. Additionally, mutant fitness in the 3-species communities can be predicted by averaging the fitness in each 2-species community. Finally, we discovered that in the mutualism S. enterica obtained vitamins and more amino acids than previously known. Our results suggest that species interactions can predictably impact fitness effect distributions, in turn suggesting that evolution may ultimately be predictable in multi-species communities.