Abstract. Long time series of spatiotemporally continuous phytoplankton functional type (PFT) data are essential for understanding marine ecosystems and global biogeochemical cycles as well as for effective marine management. In this study, we integrated artificial intelligence (AI) technology with multisource marine big data to develop a spatial–temporal–ecological ensemble model based on deep learning (STEE-DL). This model generated the first AI-driven global daily gap-free 4 km PFT chlorophyll a concentration product from 1998 to 2023 (AIGD-PFT). The AIGD-PFT significantly enhances the accuracy and spatiotemporal coverage of quantifying eight major PFTs: diatoms, dinoflagellates, haptophytes, pelagophytes, cryptophytes, green algae, prokaryotes, and Prochlorococcus. The model input encompasses (1) physical oceanographic, biogeochemical, and spatiotemporal information and (2) ocean colour data (OC-CCI v6.0) that have been gap-filled using a discrete cosine transform–penalized least squares (DCT-PLS) approach. The STEE-DL model utilizes an ensemble strategy with 100 residual neural network (ResNet) models, applying Monte Carlo and bootstrapping methods to estimate the optimal PFT chlorophyll a concentration and assess the model uncertainty through ensemble means and standard deviations. The model's performance was validated using multiple cross-validation strategies – random, spatial-block, and temporal-block methods – combined with in situ data, demonstrating STEE-DL's robustness and generalization capability. The daily updates and seamless nature of the AIGD-PFT data product capture the complex dynamics of coastal regions effectively. Finally, through a comparative analysis using a triple-collocation analysis (TCA) approach, the competitive advantages of the AIGD-PFT data product over existing products were validated. The complete product dataset (1998–2023) can be freely downloaded from https://doi.org/10.11888/RemoteSen.tpdc.301164 (Zhang and Shen, 2024a).