Patient-specific scapular shape in functional posture can be highly relevant to clinical research. Biplanar radiography is a relevant modality for that purpose with already two existing assessment methods. However, they are either time-consuming or lack accuracy. The aim of this study was to propose a new, more user-friendly and accurate method to determine scapular shape. The proposed method relied on simplified manual inputs and an upgraded version of the first 3D estimate based on statistical inferences and Moving-Least Square (MLS) deformation of a template. Then, manual adjustments, with real-time MLS algorithm and contour matching adjustments with an adapted minimal path method, were added to improve the match between the projected 3D model and the radiographic contours. The accuracy and reproducibility of the method were assessed (with 6 and 12 subjects, respectively). The shape accuracy was in average under 2mm (1.3mm in the glenoid region). The reproducibility study on the clinical parameters found intra-observer 95% confidence intervals under 3mm or 3° for all parameters, except for glenoid inclination and Critical Shoulder Angle, ranging between 3° and 6°. This method is a first step towards an accurate reconstruction of the scapula to assess clinical parameters in a functional posture. This can already be used in clinical research on non-pathologic bones to investigate the scapulothoracic joint in functional position.