With the aim of preparing highly labeled material, the incorporation of [ 32P]-orthophosphate into mitochondral and cytosol ribosomal RNA was examined in germinating wheat embryos. Nucleic acids were extracted from mitochondria and from post-mitochondrial supernatant (cytosol) prepared from homogenates of viable embryos (8 g) imbibed for 24 h in a medium containing [ 32P]orthophosphate (100 mCi). High-molecular-weight ribosomal RNA was selectively precipitated in the presence of 3 M NaCl and was further resolved on sucrose density gradients and polyacrylamide gels. Both the mitochondrial and cytosol NaCl-insoluble RNA fractions were found to contain two major radioactive components, corresponding to the large (26 S) and small (18 S) rRNA species. On non-denaturing gels, these species had apparent molecular weights of 1.3 and 0.67 million daltons (cytosol) and 1.3 and 0.75 million daltons (mitochondrial). The individual, purified [ 32P]rRNA components (isolated from sucrose gradients) had specific activities of 2–3 · 10 6 cpm A 260 unit, and were suitable for analysis of nucleotide composition and sequence. By hydrolyzing the individual [ 32P]RNA specimens with purified snake venom phosphodiesterase and resolving the products by two-dimensional paper chromatography, it was possible to determine the specific activities (cpm/μmol) of the four major 5′-nucleotide constituents. The results indicated that there had been no differential 32P-labeling of the nuclear and mitochondrial pools of ribonucleoside 5′-triphosphates (rNTP) during the 24 h imbibition period; however, as previously observed in this system (Lau, R.Y., Kennedy, T.D. and Lane, B.G. (1974) Can. J. Biochem. 52, 1110–1123), there had been unequal 32P-labeling of the individual rNTPs in both the mitochondria and nucleus. The relative specific activities of the 5′-nucleotide constituents of the mitochondrial and cytosol rRNA species were essentially the same, and in the order pA ⋍ pU > pG > pC . By making suitable corrections for these differences in specific activity, the nucleotide composition of each of the [ 32P]rRNA specimens could be calculated. Only minor differences in the proportions of the four major 5′-nucleotide constituents and in the overall G + C content were apparent when the cytosol rRNA components were compared with their mitochondrial counterparts. However, the mitochondrial RNA species were found to have a markedly lower content of modified nucleoside constituents (pseudouridine and O 2′-methylnucleosides). These data provide further evidence for the existence of distinctive species of high-molecular-weight ribosomal RNA in wheat embryo mitochondria, and demonstrate the utility of the wheat embryo system for the production of isotopically labeled, higher plant mitochondrial RNAs.