Geometric Morphometric Shape Analysis Research Articles

Geometric Morphometric Shape Analysis of Mandibular Post-Canine Dentition

Background: Genetic and epigenetic alterations have significant impacts on the morphology of permanent mandibular premolars and molars. Geometric morphometry is a powerful technique, which can be utilized to identify specific landmarks that exhibit variation and that are associated with ancestry and dimorphism. Methods: The geometric and anatomic landmarks of mandibular premolars and molars were extracted from 3D digital replicas of diagnostic dental casts prepared for model analysis (n = 160). Tooth shape analysis was conducted using various techniques, including Procrustes superimposition, Procrustes ANOVA, discriminant function analysis, and the regression of shape over the centroid size. Results: Procrustes ANOVA showed that centroid size was not significantly different between the two sexes, but shape was significantly different in the two-cusp-type second premolars (p = 0.0035) and in the first/second molars (p < 0.001). The three-cusp type of the second premolars showed the highest degree of allometry, with 3.35%, followed by the mandibular second molars, with 3%, indicating that distal class types have a tendency to exhibit allometry. The distal and lingual components of the tooth showed more variability, and females tended to have sharper cusp configurations. Conclusions: This study shows how landmarks vary in permanent human post-canine dentition, a crucial finding for anatomic reconstruction and restorative dentistry. In particular, the molars and premolars of the mandible post-canine teeth are critical for achieving optimal masticatory efficiency and overall health. Additionally, a higher degree of allometry and the later formation of cusps correlate with greater shape variation, particularly on the distal and lingual sides. For precise restorative procedures, a thorough understanding of the anatomy of these teeth is required.

Stock discrimination of Paphia malabarica from South Konkan Coast, Maharashtra, India by geometric morphometric shape and size analysis

Stock discrimination of Paphia malabarica from South Konkan Coast, Maharashtra, India by geometric morphometric shape and size analysis

A systematic review of the Iberian springsnail subgenus Alzoniella (Navarriella) (Caenogastropoda: Hydrobiidae), with the description of a new potentially relict subfamily

Abstract The threatened springsnail subgenus Alzoniella (Navarriella) in the Iberian Peninsula has been suggested to be an old and relict lineage of the family Hydrobiidae. The subgenus is represented by two morphological species, both endemic to the Pyrenees and their southern foothills. We conducted phylogenetic analyses based on mitochondrial and nuclear gene fragments of topotypes and other populations, four molecular species delimitation methods, and morphological examinations to clarify the uncertain systematic position of the subgenus within the family, assess its species diversity, and understand the population genetic structure of the two geographically restricted species. Our phylogenetic results revealed that Alzoniella (Navarriella) is distantly related to all other species of Alzoniella, even belonging to an independent subfamily-level clade, for which we introduce the new genus Navarriella and the new subfamily Navarriellinae subfam. nov. Molecular methods and geometric morphometric analysis of shell shape identified a single species in the new genus. The significant phylogenetic distance from other hydrobiid taxa, narrow distribution, and limited gene flow among its populations (estimated from mitochondrial cytochrome c oxidase subunit I sequences) highlight Navarriella as an isolated lineage within the family that requires urgent conservation attention. Furthermore, our results cast a new light on the northern Iberian Mountains as a dispersal barrier for ancient spring lineages.

Using Geometric Morphometric Analysis of Magnetic Resonance Imaging to Assess the Anatomy of the Eustachian Tube in Children with and without Otitis Media.

Otitis media (OM) is among the most common of childhood illnesses. It has long been hypothesized that children under age two are predisposed to OM due to differences in the anatomy of the Eustachian tube (ET), including the angle of the ET. OM in later childhood is less common but does occur, begging the question, are there shape differences in the ET that persist underlying later occurrences of OM? To answer this question, a novel method, which applied geometric and morphometric shape analysis to landmarks obtained from MRI data, was used. MRI scans were performed on 16 children (5 control, 3 cOME, and 8 rAOM) between 2011 and 2015. Sixteen landmarks representing the shape of the ET, cranial base, and palate were analyzed. The results of a Procrustes ANOVA indicate that the shape of the ET varies significantly (p < 0.01) between the OM and control groups. The shape differences between the OM group and the control are a medial and low attachment site of the tensor veli palatini (TVP) muscle, a posterior and high torus tubarius, and an anteriorly projected palate. These results support previous findings that a relatively horizontal ET is associated with a predisposition for OM. This study used a novel approach to examine anatomical differences in children with and without OM. First, the data set is unique in that it includes MRI scans of children with a confirmed OM diagnosis. Second, the use of MRI scans in craniofacial anatomy OM research is novel and allows for the collection of soft tissue landmarks and the visualization of soft tissue structures. Third, geometric morphometric shape analysis is a statistical method that captures shape differences, offering a more universal picture of nuanced changes within the entire set of landmarks, in contrast to more traditional linear and angular measurements used in prior OM studies examining craniofacial anatomy.

Geometric morphometric analysis of Neolithic wheat grains: insights into the early development of free-threshing forms

Current knowledge of the origins and routes of introduction of both tetraploid and hexaploid free-threshing wheats (FTWs) from western Asia into Europe remains imprecise. Archaeobotanical distinction of ploidy level is often dependent on sparsely recovered rachis segments, while more specific identification of cultivars within ploidy groups using morphological characteristics of either grain or chaff is generally considered unreliable. This study offers a complementary approach by using geometric morphometric (GMM) analysis of grain shape to assess taxonomic and variety level distinctions in archaeobotanical FTW remains. Two substantial and well-preserved assemblages of Neolithic FTW grains from 7th millennium bce Çatalhöyük (central Anatolia, Turkey) and 6th millennium Kouphovouno (Peloponnese, Greece) were analysed with the aim of shedding light on the naked wheats cultivated by these early agricultural communities. While chaff remains from Çatalhöyük indicate a hexaploid FTW crop, no such diagnostic remains were recovered from Kouphovouno. GMM analysis of the archaeobotanical grains has corroborated early cultivation of hexaploid naked wheat at Çatalhöyük, whilst revealing that a tetraploid wheat, most closely resembling ‘unimproved’ durum wheat, was likely grown at Kouphovouno. The Kouphovouno findings are contextualised within existing theories of a Mediterranean route for introduction of tetraploid FTWs from western Asia to south-western Europe. At both sites, an assessment of the role of FTWs over time suggests changes in the cultural value attributed to these crops and/or the sustainability of the agricultural regimes they were associated with.

Sharpening the mesowear tool: geometric morphometric analysis of cusp shape and diet in ruminants

Mesowear is a dietary proxy that relates attritive wear and abrasive wear to the shape of worn tooth cusps of ungulates. Traditional mesowear methods categorize cusps according to relief and sharpness. A geometric morphometric approach has the potential to measure shape with higher precision and to discover unrecognized aspects of cusp shape, possibly improving the efficacy of mesowear. We quantified mesowear in extant Ruminantia, using a 2-D semilandmark outline technique on upper second molar metacones generated from photographs. Among the 91 species sampled, 65 were preassigned to dietary categories, browser, grazer, mixed feeder, and frugivore based on substantiated documentation of diet in the wildlife literature. Metacone cusp shape and metacone mesowear score were found to be independent of size. Principal component and discriminant function analyses of Procrustes transformed semilandmark coordinates revealed two diet-related components of cusp shape. The primary component is related to the traditional mesowear variables of cusp height and side steepness. The secondary shape component reveals variation in the mesiodistal symmetry of the metacone and may relate to a proal vector during the power stroke phase or the relative orientation of the cusps with respect to the chewing stroke vector. Discriminant function analysis of semilandmark data accurately classified the diets of species more frequently (67.2%) than the traditional mesowear method (56.1%). The semilandmark data successfully recognized the diets of grazing and browsing species with correct classification rates ranging from 69% to 95%. The diets of frugivorous and mixed feeding species were less frequently correctly recognized (33%–53%). Mixed feeding diets may be more difficult to recognize due to more heterogeneous diets when compared to browsers and grazers. Frugivores are more difficult to recognize because their rounded cusp apices resemble those of mixed feeders and grazers. We conclude that quantitative shape analysis improves the potential of mesowear. When used as a dietary proxy, we anticipate that mesowear analysis will correctly categorize the diets of most species. When misclassifications are made, they may most often be misclassifications of generalist mixed feeders and frugivores as either browsers or grazers.

Morphology and taxonomic assessment of eight genetic clades of Mercuria Boeters, 1971 (Caenogastropoda, Hydrobiidae), with the description of five new species

The freshwater snail genus Mercuria is widely distributed in lowland waters across Western Europe, Northern Africa and the Mediterranean islands. Approximately two-thirds of the currently recognised species are described based on their shell morphology, which may vary within species due to biotic and abiotic factors. Recent molecular phylogenies that included numerous previously documented populations recovered 14 species clades, nine of which correspond to nominal species and five, to undescribed taxa. Here, we formally describe the five undescribed taxa as new species and provide morphological descriptions of the shell and other anatomical structures for three of the other inferred clades and for the species M. maceana to elucidate their taxonomic status and assess the utility of morphological characters for species delimitation in Mercuria. Taken together, the morphological and molecular evidence suggest new identifications and synonymies, having implications on the known geographic range of the studied species, including the type species M. similis. Anatomical measurements and geometric morphometric analysis of shell shape revealed no clear differentiation among the species analysed, predicting the importance of molecular data in elucidating the species diversity of the genus.

Geometric Morphometric Analysis of Wing Shape to Identify Populations of Apis mellifera in Camagüey, Cuba.

A total of 45 Apis mellifera colonies were sampled from nine centers for rearing queens in the Camagüey province, Cuba. Wing geometric morphometric analysis was used to determine the ancestry and identify Africanization processes at different altitudes in managed honeybee populations on the island. A total of 350 reference wings were obtained from the pure subspecies: Apis mellifera mellifera, Apis mellifera carnica, Apis mellifera ligustica, Apis mellifera caucasia, Apis mellifera iberiensis, Apis mellifera intermissa, and Apis mellifera scutellata for the study. Our results showed that altitude influences wing shape; and that 96.0% (432) of the individuals were classified as Cuban hybrids, with a tendency to the formation of a new morphotype. In addition, a great similarity was found with the subspecies Apis mellifera mellifera, and it was confirmed that there is no Africanization due to the low presence of 0.44% (2) of this morphotype in the population under study. The greatest Mahalanobis distances were obtained for the comparisons between the center rearing of queens in the Camagüey province with the subspecies A. m. scutellata (D2 = 5.18); A. m. caucasia (D2 = 6.08); A. m. ligustica (D2 = 6.27); and A. m. carnica (D2 = 6.62). The well-defined pattern of wing shape produced by honeybee populations in Camagüey's centers for queen rearing suggests a Cuban hybrid. Moreover, it is essential to note that the populations of bees under investigation lack Africanized morphotypes, indicating that Camagüey bees have not interacted with the African lineage.

Evaluating the Fluted Points from Spring Lake, Texas: A Geometric Morphometric Shape Analysis of Clovis Affinity

ABSTRACT The Spring Lake Site (41HY160) in San Marcos, located along the Balcones Escarpment in central Texas, produced fluted points that appear diagnostic of Clovis technology as well as ice-age megafauna remains. Unfortunately, these materials were recovered in what appears to be mixed deposits within the lake itself. For over 40 years, researchers have hypothesized that the points represent Clovis technology and presence at the site. We use a two-dimensional landmark approach to geometric morphometric shape analysis to test the typological context of the artifacts against a dataset of well-dated Clovis point specimens. We examine whether they fall within a morphological range of variation in planview shape documented in point assemblages from Clovis sites organized geographically into the Southwest, Northwest, and Northeast regions. Results suggest that the Spring Lake points possess particular affinity in shape to Clovis points found in the Southwest region.

Another mention of Meadow Vole (&lt;i&gt;Microtus pennsylvanicus&lt;/i&gt;) found in pellets of Snowy Owl (&lt;i&gt;Bubo scandiacus&lt;/i&gt;) in northern Ungava Peninsula, Canada

The examination of raptor pellets can be used to evaluate Arctic biodiversity. We found the remains of Meadow Vole (Microtus pennsylvanicus) and Ungava Collared Lemming (Dicrostonyx hudsonius) in pellets from Snowy Owl (Bubo scandiacus) nesting in the northern part of the Ungava Peninsula. We differentiated the two species by visual identification and geometric morphometric analysis of molar shape. The results of our study combined with historical data suggest that most commonly used range maps of Meadow Vole should be revised.

Ovariectomized rat model and shape variation in the bony labyrinth.

Postmenopausal osteoporosis is a serious concern in aging individuals, but has not been explored for its potential to alter the shape of the inner ear by way of increased remodeling in the otic capsule. The otic capsule, or bony labyrinth, is thought to experience uniquely limited remodeling after development due to high levels of osteoprotegerin. On this basis, despite the widespread remodeling that accompanies osteoporosis, we hypothesize that both the shape and volume of the semicircular canals will resist such changes. To test this hypothesis, we conducted three-dimensional geometric morphometric shape analysis on microcomputed tomographic data collected on the semicircular canals of an ovariectomized (OVX) rat model. A Procrustes ANOVA found no statistically significant differences in shape between surgery and sham groups, and morphological disparity testing likewise found no differences in shape variation. Univariate testing found no differences in semicircular volume between OVX and control groups. The range of variation in the OVX group, however, is greater than in the sham group but this difference does not reach statistical significance, perhaps because of a combination of small effect size and low sample size. This finding suggests that labyrinthine shape remains a tool for assessing phylogeny and function in the fossil record, but that it is possible that osteoporosis may be contributing to intraspecific shape variation in the bony labyrinth. This effect warrants further exploration at a microstructural level with continued focus on variables related to remodeling.

Reevaluation of the Classification Scheme of the Acheulian in the Levant - 50 Years Later: A Morpho-Technological Analysis of Handaxe Variability

The chrono-cultural scheme of the Acheulian Technocomplex in the Levant, developed in the 1970's on the basis of handaxe typological variability, still serves as the main framework for the description of this cultural entity and as a benchmark for the classification of new Acheulian assemblages. It consists of a tripartite division into Early, Middle, and Late Acheulian and it postulates a development in the shapes, sizes, and refinement of handaxes, suggesting that they become rounder, smaller, and more 'finely made' over time. The following study applies new analytical approaches, a 3D geometric morphometric shape analysis, a typo-technological attribute analysis, and diacritic diagrams to a large collection of handaxes from five sites in Israel in order to test the validity of the tripartite division, and to provide a detailed characterization of the nature of diachronic changes in handaxe properties. The results suggest that the general chrono-cultural division is valid, as assemblages pertaining to each of its three phases indeed differ significantly in terms of morphology and production technologies. In addition, they indicate a complex trend of change, in which the Middle Acheulian assemblage presents higher values of morpho-technological aspects associated with craftsmanship than some of the Late Acheulian assemblages. Lastly, the quantitative and objective nature of the approach and availability of the raw data establish a foundation for future expansion of this study by additional samples from different regions and chronologies.

Homo naledi pollical metacarpal shaft morphology is distinctive and intermediate between that of australopiths and other members of the genus Homo

Homo naledi fossils from the Rising Star cave system provide important insights into the diversity of hand morphology within the genus Homo. Notably, the pollical (thumb) metacarpal (Mc1) displays an unusual suite of characteristics including a median longitudinal crest, a narrow proximal base, and broad flaring intrinsic muscle flanges. The present study evaluates the affinities of H. naledi Mc1 morphology via 3D geometric morphometric analysis of shaft shape using a broader comparative sample (n = 337) of fossil hominins, recent humans, apes, and cercopithecoid monkeys than in prior work. Results confirm that the H. naledi Mc1 is distinctive from most other hominins in being narrow at the proximal end but surmounted by flaring muscle flanges distally. Only StW 418 (Australopithecus cf. africanus) is similar in these aspects of shape. The gracile proximal shaft is most similar to cercopithecoids, Pan, Pongo, Australopithecus afarensis, and Australopithecus sediba, suggesting that H. naledi retains the condition primitive for the genus Homo. In contrast, Neandertal Mc1s are characterized by wide proximal bases and shafts, pinched midshafts, and broad distal flanges, while those of recent humans generally have straight shafts, less robust muscle flanges, and wide proximal shafts/bases. Although uncertainties remain regarding character polarity, the morphology of the H. naledi thumb might be interpreted as a retained intermediate state in a transformation series between the overall gracility of the shaft and the robust shafts of later hominins. Such a model suggests that the addition of broad medial and lateral muscle flanges to a primitively slender shaft was the first modification in transforming the Mc1 into the overall more robust structure exhibited by other Homo taxa including Neandertals and recent Homo sapiens in whose shared lineage the bases and proximal shafts became expanded, possibly as an adaptation to the repeated recruitment of powerful intrinsic pollical muscles.

Landmark-based geometric morphometric analysis of wing size and wing shape among Aedes albopictus (Skuse, 1894) populations in Turkey.

Aedes albopictus (Skuse, 1894) has a widespread distribution that includes both temperate and tropical climates. It is a potential vector of several important worldwide arboviruses, including chikungunya, zika, and dengue, and its geographical distribution expands rapidly. Despite its vectorial importance, the bioecological features of this species in newly established environments are still not very well known. Thus, this study investigated phenotypic variations among Ae. albopictus populations from different regions in Turkey. This is the first comparative morphological study of Ae. albopictus populations in Turkey. The procrustes distances phenogram derived from wing data indicates that the shape differences among some populations and the population from the Aegean coast differ from the Black Sea populations. Size differences were also detected between some populations.

A new fanged frog in the Limnonectes kuhlii complex (Anura: Dicroglossidae) from northeastern Cambodia.

The Limnonectes kuhlii complex is a group of morphologically similar species of fanged frogs distributed across much of mainland and insular Southeast Asia. Many new species in this complex have been described in recent years, primarily on the basis of mitochondrial DNA divergence corroborated by differences in linear measurements and qualitative characters. Males in this species complex develop enlarged heads at sexual maturity, but the degree of head enlargement varies among mature males, even within the same population. We evaluated the utility of body length (snout-vent length minus head length) in descriptive statistics and in size-adjusting measurements for traditional morphometric analysis, as well as a landmark-based geometric morphometric analysis of male head shape, in Indochinese species of the L. kuhlii complex. The analyses supported quantitative and qualitative morphological distinction of a divergent mitochondrial lineage of the L. kuhlii complex in northeastern Cambodia, and the lineage is described as a new species. Limnonectes fastigatus sp. nov. differs from its closest relatives and from geographically proximate members of the complex by having the combination of elongated, slender odontoids; nuptial pads on the first finger; immaculate belly; significantly different body length-adjusted measurements in both sexes; and a significantly different male head shape. The new species is the only member of the L. kuhlii complex known from Cambodia.

Patterns of bilateral asymmetry and allometry in Late Devonian Polygnathus conodonts

AbstractConodont animals were early jawless vertebrates equipped with a feeding apparatus composed of several tooth‐like elements. The P1 elements, at the rear of the apparatus, were characterized by a robust shape and rapid morphological evolution. Occlusion occurred between paired right and left P1 elements, occasioning some bilateral asymmetry, which, together with allometric growth, may partially obliterate the temporal differences. The present study aims to disentangle these different components of morphological variation in Late Devonian Polygnathus P1 conodont elements. An extensive 2D geometric morphometric analysis of the platform shape was performed through the Famennian record of two outcrops. This analysis was completed by a 3D study on a subset of conodont elements. The 2D and 3D morphometric quantifications provided highly congruent results, showing that the 2D shape constitutes a good approximation of the element geometry. The 3D analysis delivered further insights into the relationship between the geometry of the elements and the constraints related to occlusion. The 2D analysis allowed a quantitative assessment of the variation among species and through time. Allometry and bilateral asymmetry were differently expressed depending on the species considered, suggesting that constraints imposed on pairing by the morphology of the elements varied even among related species. The within‐species variation was so important that it largely obliterated temporal trends; a relationship of Polygnathus shape and conodont biofacies variations through the Famennian nevertheless suggested an evolution driven by ecological interactions between conodont genera.

Geometric morphometric analysis of Japanese female facial shape in relation to psychological impression space

Facial appearance has essential consequences in various social interactions. Previous studies have shown that although people can perceive a variety of impressions from a face, these impressions may form from a relatively small number of core dimensions in the psychological impression space (e.g., valence and dominance). However, few studies have thus far examined which facial shape features contribute to perceptions of the core trait impression dimensions for Asian female faces. This study aimed to identify the commonalities between various facial impressions of Japanese female faces and determine the facial shape components associated with such impressions by applying geometric morphometric (GMM) analysis. In Experiment 1 (Modeling study), Japanese female faces were evaluated in terms of 18 trait adjectives that are frequently used to describe facial appearance in daily life. We found that Japanese female facial appearance is indeed evaluated mainly on the valence and dominance dimensions. In Experiment 2 (Validation study), we confirmed that all the trait impressions were quantitatively manipulated by transforming the facial shape features associated with valence and dominance. Our results provide evidence that various facial impressions derived from these two underlying dimensions can be quantitatively manipulated by transforming facial shape using the GMM techniques.

Combining chemical and lead isotope analyses with 3-D geometric–morphometric shape analysis: A methodological case study of socketed bronze arrowheads from the southern Levant

In this study, the shape of socketed bronze arrowheads is analysed and expressed as a series of mathematical trends which are then compared to chemical and lead isotope composition, as well as to the categorization of traditional non-computerized typology. It is shown that while traditional typology has statistical validation, additional important information can be gleaned from 3-D geometric morphometric shape analysis (3DGM), particularly when combined with material analyses. For example, arrowheads that are traditionally categorized as a single type demonstrate minute shape differences that correlate with the sites where they were found. This micro-variability, detected only through 3DGM, has potential cultural, chronological and regional implications. Most importantly, this pilot study shows that chemical and isotopic composition is correlated to a specific shape trend, revealed through computerized analysis, rather than to the traditional typological classification. This opens up new vistas for a more advanced analysis of archaeological finds.

Predator-specific inducible morphological defenses of a water flea against two freshwater predators.

The expression of inducible morphological defenses in Daphnia in response to a single predator is a well-known phenomenon. However, predator-specific modifications of the same defensive traits as an adaption to different predator regimes is so far only described for Daphnia barbata. It is unknown if this accounts only for this species or if it is a more widespread, general adaptive response in the genus Daphnia. In the present study, we therefore investigated whether a clone of the pond-dwelling species Daphnia similis responds to different predatory invertebrates (Triops cancriformis; Notonecta maculata) with the expression of predator-specific modifications of the same defensive traits. We showed that Triops-exposed individuals express a significantly longer tail-spine, while body width decreased in comparison to control individuals. Additionally, they also expressed inconspicuous defenses, that is, significantly longer spinules on the dorsal ridge. The Notonecta-exposed D. similis showed a significantly longer tail-spine, longer spinules and a larger spinules bearing area on the dorsal ridge than control individuals as well. However, a geometric morphometric analysis of the head shape revealed significant, predator-specific changes. Triops-exposed individuals expressed a flattened head shape with a pronounced dorsal edge, while Notonecta-exposed individuals developed a high and strongly rounded head. Our study describes so far unrecognized inducible defenses of D. similis against two predators in temporary waters. Furthermore, the predator-dependent change in head shape is in concordance with the 'concept of modality', which highlights the qualitative aspect of natural selection caused by predators.

Anatomy and shell shape variability in a land snail Bostryx torallyi (Stylommatophora: Bulimulidae)

Introduction: The gastropod Bostryx torallyi shows high variability in shell shape and coloration. Subspecies of this organism have been described based on shell characters but, since they were slightly different, they were synonymized afterwards. Until now, shell variability has been analyzed only descriptively and its anatomy is still unknown. Objective: In this study, I provide anatomical information of B. torallyi and apply a geometric morphometric analysis to evaluate the shell shape variation among specimens. Methods: To accomplish this, type material and numerous lots were examined and dissected out. Additionally, relative warp analysis, based on 9 landmarks in ventral view of the shell, was performed using 80 specimens of 9 localities from Bolivia and Argentina. Results: According to our results, geometric morphometrics is a suitable method to evaluate differences in shell shape among localities; for instance, distinctions in the shell were noticeable between gastropods of low and high altitudes. On the other hand, it was established that the coloration of this species is independent of large-scale factors since the examined specimens came from environments with similar conditions. Furthermore, the sculpture of the protoconch and anatomy of B. torallyi coincided with the other Argentinian species of the genus. Conclusions: Therefore, I concluded that a geometric morphometric analysis of shell shape is a good complement to traditional qualitative description of the characteristics of the shell in this species.