The general tectonic structural architecture of southern Africa is an ensemble comprised of Kalahari Craton, a vast range of mosaics of the best-preserved geological Belts, and exposed crustal blocks. In the region, demarcation of geological boundaries, tracing of magnetic and gravitational bodies, and detrending lineaments are essential to understanding the structural limits. The study presents the prevalent gravitational and magnetic investigation of major geological Belts, enhancing edges of Cratons, and evaluation of surface invariants to improve the geological understanding and evaluate the correlation of structures with the general structural tectonic framework. The utilized filter methods in the gravity maps are the Directional derivatives along x, y, and z-directions, the Modulus tensor, the Total horizontal derivative, and the Tilt angle techniques.The phase-based filters used in the magnetic section include the Total horizontal derivative, Analytical signal, Tilt angle method, Tilt of total horizontal derivative, Theta method, Horizontal tilt angle method, Enhanced tilt filter, and Enhanced total derivative of the tilt angle. The Directional derivatives of the gravity field and the Modulus of the gravity gradient tensor demarcate the boundaries of geological structures. The Total horizontal derivative method gives an immediate and easy-to-read image of the linear structures and fault systems. The signal cluster on the Analytical signal and Tilt angle maps delineate the boundaries of causative geological sources. The Theta map is comparable with the enhanced total derivative of the tilt angle. The Tilt of the total horizontal derivative, Theta map, and Enhanced tilt filter accentuate the traces of magnetic bodies, including the Cratons. The study finds regional lineaments surrounding the Cratons and concentrated along the geological Belts. The approach of using joint elegant filters is effective and increases the certainty of the interpretation.