Origins Of Geography Research Articles

SNP-based genetic diversity assessment among hungarian bread wheat (Triticum aestivum L.) genotypes

World’s food supply will be a great challenge due to the rapid growth of human population. Therefore, wheat breeders are facing a great task to improve further the crop quality and quantity. Genetic improvement could be the key in this progression, which is based on the exploitation of genetic resources. So it is important to hold exact information about the wheat population structure, especially the genetic diversity of elite crop germplasm. Here, we provide the characterisation of 85 Hungarian wheat varieties from 3 different Hungarian breeding programmes (Szeged, Martonvásár and Karcag) trough Competitive Allele-Specific PCR (KASP) technique. Population structure of these accessions were examined by STRUCTURE software and the ΔK values were calculating by the STRUCTURE HARVESTER. These investigations revealed 3 subgroups in our wheat population with 21, 19 and 45 genotypes in GrI, GrII and GrIII, respectively. We could conclude that the GrI and GrIII subgroups contained genotypes from all three origins while GrII contained genotypes only from Szeged. We also examined the allele distribution of the Xgwm261 locus since the 192 bp allele is reported to be linked to semi-dwarfing gene Rht8, which has important role in the breeding process. Altogether we could observe 5 size variant products, but the 174 bp (22.35%), 192 bp (55.29%), and 198 bp (12.94%) long fragments could be found the most frequently. The present study confirms that population structure and genotype relatedness, based on molecular data, are consistent with the geography origin and available pedigree data. Moreover, this study could be the starting point of a following association mapping work.

Analysis on Genetic Similarity of Japonica Rice Variety from Different Origins of Geography in the World

The genetic similarity and genetic difference among improved japonica rice varieties from different countries (or regions and organizations) were detected. The aim is to provide genetic basis to the breeding of japonica rice varieties. The genetic similarity and cluster of 313 improved japonica varieties from 20 countries (or regions and organizations) were analyzed using the SSR marker. With 34 SSR primers which were polymorphic and uniformly distributed in rice genome, totally 198 alleles were detected among these improved varieties with the average number of alleles per pair of primers of 5.8235. RM320, RM531, RM1, RM21, and RM336 located more alleles, which were 16, 13, 12, 10, and 10 respectively. RM320, RM336, RM286, RM531, and RM21 showed higher genetic diversity indexes, which were 2.3668, 2.0041, 1.9684, 1.9508, and 1.7203, respectively. The genetic similarity for improved japonica varieties among different countries (or regions and organizations) were ranged from 0.279 to 0.918, and the mean value was 0.653. The rice varieties from countries whose latitude and geography position were all nearer were clustered together with higher genetic similarity indexes. The rice varieties from countries who had more different latitude and far geography position were clustered separately with lower genetic similarity indexes. The results indicated the genetic similarity indexes among improved japonica varieties had a close relationship with the geographical position, especially with the latitude.

The Cold War and geography’s quantitative revolution: Some messy reflections on Barnes’ geographical underworld

A response to a recent paper by Barnes, arguing that the origins of geography’s quantitative revolution were not as monofocused as he suggests.

Classic Kaposi's sarcoma in Jews living in Israel, 1961-1989: a population-based incidence study.

The incidence of classic Kaposi's sarcoma (CKS) has been reported to be high in Jewish populations, mostly born in Eastern Europe. To describe the incidence on CKS in Israeli Jews and to determine differences in incidence according to their geography origin. We analysed data on 1098 incident CKS cases with known country of origin occurring between 1961 and 1989 in the Jewish Israeli population. Reporting systems were the Israel Cancer Registry, the medical documentation of all-Kaposi's sarcoma cases and the registry of HIV-seropositive patients. Patients who were seropositive for HIV were excluded from the study population. Population figures for groups of migrants and natives were derived from census surveys (1961, 1972, 1983) and inter-census estimates based on the population registry. The overall age-standardized rate of CKS was 16.9 per million in men and 6.3 per million in women. The ratio between genders remained stable during the study period. In both genders, there was a steep increase in CKS incidence between the late 1960s (age-standardized rates per million: 8.0 in men and 2.2 in women) and the early 1970s (17.9 in men and 6.7 in women). No further increase was present after 1971. Overall, immigrants experienced a relative risk (RR) of 1.17 [95% confidence interval (CI) 0.90-1.521 compared with Jews born in Israel. Immigrants from Morocco, Algeria and Tunisia had the highest incidence (RR 2.01; 95% CI 1.52-2.65) compared with Jews born in Israel, followed by those born in Iraq (RR 1.74; CI 95% 1.27-2.37). The lowest incidence was experienced by immigrants from Iran (RR 0.37; CI 95% 0.18-0.77) and from Central European countries (RR 0.45; CI 95% 0.30-0.66). Immigrants from other countries in Asia, Africa, the Americas and Europe had similar rates as Jews born in Israel. Israeli Jews present one of the highest incidences of CKS reported from developed countries. The incidence varies according to geographical origin. Countries surrounding the Mediterranean sea represent the area of highest CKS incidence.