Genetic Variation In Natural Populations Research Articles

Spatial Pattern of Genetic Diversity and Demographic History Revealed by Population Genomic Analysis: Resilience to Climate Fluctuations of Acer truncatum Bunge

Whole genome sequencing techniques are capable of providing insights into plant genetic adaptation to climate oscillations. Acer truncatum Bunge is a new resource tree for food with ornamental, timber and medicinal value. However, it has been listed as a near-threatened species because of the decreasing number of natural populations. In order to develop conservation strategies and sustainable innovative utilization for genetic resources, spatial pattern of genetic diversity and demographic history of A. truncatum from 13 natural populations, which cover the entire range, were analyzed by 9,086,353 single nucleotide polymorphisms (SNPs) through whole genome resequencing. The genetic diversity of natural populations was high (He = 0.289, I = 0.449), and genetic variations mainly resided within populations (82.47%) by AMOVA analysis. Cluster analysis showed that 13 natural populations mainly originated from three common gene pools. Therefore, it is recommended that the natural populations (LBGM, BTM, WLS and DQT) with high genetic diversity in different groups were given priority for in situ conservation and the genetic resources from these populations were collected for ex situ conservation. The effective population size of A. truncatum experienced two large-scale sharp contractions and currently decreased to its bottom in history. Nonetheless, A. truncatum could have expanded its effective population size to its historical peak after the last glacial period, indicating that it is highly resilient to fluctuations of temperature and humidity.

Local scale extreme low pH conditions and genetic differences shape phenotypic variation in a broad dispersal copepod species

Extreme low pH events in estuaries and upwelling areas can modulate the phenotypic and genetic diversity of natural populations. To test this hypothesis, we explored the linkage between local scale extreme low pH events, genetic diversity, and variation in fecundity-related traits (body size, egg size, and egg production rate) in the broad-dispersal copepod Acartia tonsa. We assessed genetic and phenotypic characteristics of populations by contrasting extreme low pH environments (upwelling and temperate estuary) in the coastal Southeast Pacific, under natural and experimental conditions. These populations showed significant genetic differentiation with higher diversity in mitochondrial and nuclear loci (encoding mtCOI and 18S rRNA) in the estuarine population. Copepods from this population are exposed to more frequent extreme low pH events (< 7.7), and the adult females exhibit consistent phenotypic variation in body size, egg size, and egg production rate across different cohorts. Experimental acclimation to extreme low pH conditions revealed no significant differences in fecundity-related traits between A. tonsa populations. Although these results partially support our hypothesis, the experimental findings suggest other drivers might also influence phenotypic differences in the local environments.

Genetic Diversity in Natural Populations of the Near-Threatened Species Lignobrycon myersi (Characiformes, Triportheidae): Implications for Species Conservation.

The river basins of Brazil contain a highly diverse ichthyofauna of remarkable endemism, including several threatened species. Accordingly, Lignobrycon myersi is a fish species distributed only in a few rivers from the state of Bahia, northeastern Brazil. Since this species is classified as Near Threatened and is poorly studied, efforts to understand the genetic structure of populations and putative cryptic forms should help define efficient strategies of management and conservation. Herein, the molecular identification and the population genetic diversity of specimens of L. myersi across their range (Almada, Contas, and Cachoeira river basins) were assessed using mitochondrial markers (16S rDNA and D-Loop, respectively). The inferences based on phylogenetics, genetic distance, and species delimitation methods invariably identified all samples as L. myersi. In addition, sequencing of D-loop fragments revealed significant haplotype diversity and a considerable level of population genetic structure. Despite their geographic isolation, these data suggested that populations from Almada and Contas rivers represent a single evolutionary lineage that could be managed as a whole. In contrast, the population from Cachoeira River was highly differentiated from the others and should be managed separately as a unique and endemic unit, particularly focused on the conservation of native habitats.

Chemical and genetic diversity of Baccharis dracunculifolia DC. (Asteraceae) from the Cerrado biome

The essential oil of four populations of Baccharis dracunculifolia was analyzed for their chemical composition by CG/MS and the study of genetic diversity was conducted by analyzing the DNA polymorphism using microsatellite markers. The predominant compounds were E-nerolidol, cis-β-guaiene, germacrene D, E-caryophyllene, limonene, α-pinene, β-myrcene, δ-cadinene, β-pinene and spathulenol. The E-nerolidol substance was the most abundant among the compounds present in the essential oil in all populations. Genetic analysis showed that most of the diversity of B. dracunculifolia was within populations, and the diversity among populations is not expressive. All the populations evaluated in this study were in a process of extensive fragmentation, this might be the main cause of reduced genetic diversity of this specie in Cerrado biome. The comparison between PCA of genotypes and chemodiversity reinforces the unique profile for each population despite the environmental similarity observed and genetic analysis. The results obtained in this work, using microsatellite markers, made it possible to assess the genetic variability in natural populations of B. dracunculifolia.

DIVERSIDAD DEL MAÍZ EN TRES ZONAS GEOMORFOLÓGICAS DE YUCATÁN, MÉXICO

<p><strong>Background: </strong>Maize (<em>Zea mays</em> L.) is the main sustenance in the daily diet of Mexican families. As a crop, it is one of the most important in the country of Mexico, and in Yucatan state, it is grown under rainfed conditions in milpas with no mechanizable lands. In this study, an analysis of the phenotypic variability from cob collects of native maize from Yucatan state was carried out, with ethnobotanical information collected within passport data. <strong>Objectives:</strong> To introduce the genetic diversity of maize into a germplasm bank, to know the genetic diversity of native populations based on the characteristics of cob, to know its distribution, to find the potential populations in each collection area for its use in genetic improvement programs. <strong>Methodology: </strong>66 Tuxpeños, 13 Dzit bacal, 6 Nal tel, 13 Xmejen nal, and 2 Nal xoy were collected in the southern, central, and eastern regions of the state, from January to March 2020, by sampling the four cardinal points in each community visited. A vector map of collections in Yucatan was developed and quantitative data of 13 biometric cob variables were recorded in 100 populations (crop cycles: late n=68; intermediate n=26; early n=6), a general data analysis of variance (ANOVA) and by crop cycles were made, principal component analysis (PCA), hierarchically clustered with the average linkage method and discriminant analysis were made. Qualitative data from ethnobotanical surveys with mixed questions applied to milperos at the time of collection are presented. <strong>Results: </strong>The diversity of native maize in Yucatan is made up of three main groups based on the crop cycle: late, intermediate, and early. The southern and eastern regions of Yucatan preserve greater diversity, representing 44 and 40% of the total collections, respectively. There were significant differences in all ear variables; in a late growth cycle, only the grain thickness did not show differences between populations, and in the early growth cycle the grain thickness, width, and length variables were not significant. The PCA explained 80% of the total variation, seven different groups were formed, with greater differentiation in early maize Nal tel, intermediate Xmejen nal and Dzit bacal, contrary to the Tuxpeños late maize. Ten promising populations were identified for selection in each geomorphological region: eight correspond to the southern, two to the eastern, and one to the center of Yucatan state. The main factors to select for sowing corn in the region are: white and yellow maize for yield, the resistance to weevil attack for red maize, and the perception of color and palatability in purple maize. <strong>Implications: </strong>A complete phenotypic characterization in the field is required with a special interest in red-pigmented maize.<strong> Conclusions: </strong>The interest of the milperos in conserving and sowing the different native maize are based on the color of the grain, the benefits and uses that they can obtain from them, which determine the planting area in the milpas of the different races/varieties of maize. Red grain maize is being planted in a lower area in relation to other colors. The southern and eastern geomorphological regions showed a genetic flow between them.</p>

Differentiation and decreased genetic diversity in field contaminated oysters Crassostrea hongkongensis: Identification of selection signatures

The extent to which chemical contamination affects the population structure and genetic diversity of natural populations remains elusive. Here, we used the whole-genome resequencing and transcriptome to diagnose the effects of long-term exposure to multiple elevated chemical pollutants on the population differentiation and genetic diversity in oysters Crassostrea hongkongensis in a typically polluted Pearl River Estuary (PRE) of Southern China. Population structure revealed an obvious differentiation between the PRE oysters and those collected from a nearby clean Beihai (BH) individuals, while no significant differentiation was observed among individuals collected from the three pollution sites within PRE due to the high gene flow. The decreased genetic diversity in the PRE oysters reflected the long-term effects of chemical pollutants. Selective sweeps between BH and PRE oysters revealed that chemical defensome genes, including glutathione S-transferase, zinc transporter, were responsible for their differentiation, sharing common metabolic process of other pollutants. Combined with the genome-wide association analysis, 25 regions containing 77 genes were identified to be responsible for the direct selection regions of metals. Linkage disequilibrium blocks and haplotypes within these regions provided the biomarkers of permanent effects. Our results provide important insights to the genetic mechanisms underlying the rapid evolution under chemical contamination in marine bivalves.

Tropical forest loss and geographic location drive the functional genomic diversity of an endangered palm tree.

Human activity has diminished forests in different terrestrial ecosystems. This is well illustrated in the Brazilian Atlantic Forest, which still hosts high levels of species richness and endemism, even with only 28% of its original extent remaining. The consequences of such forest loss in remaining populations can be investigated with several approaches, including the genomic perspective, which allows a broader understanding of how human disturbance influences the genetic variability in natural populations. In this context, our study investigated the genomic responses of Euterpe edulis Martius, an endangered palm tree, in forest remnants located in landscapes presenting different forest cover amount and composed by distinct bird assemblage that disperse its seeds. We sampled 22 areas of the Brazilian Atlantic Forest in four regions using SNP markers inserted into transcribed regions of the genome of E.edulis, distinguishing neutral loci from those putatively under natural selection (outlier). We demonstrate that populations show patterns of structure and genetic variability that differ between regions, as a possible reflection of deforestation and biogeographic histories. Deforested landscapes still maintain high neutral genetic diversity due to gene flow over short distances. Overall, we not only support previous evidence with microsatellite markers, but also show that deforestation can influence the genetic variability outlier, in the scenario of selective pressures imposed by these stressful environments. Based on our findings, we suggest that, to protect genetic diversity in the long term, it is necessary to reforest and enrich deforested areas, using seeds from populations in the same management target region.

Genomics reveal the origins and current structure of a genetically depauperate freshwater species in its introduced Alaskan range.

Invasive species are a major threat to global biodiversity, yet also represent large-scale unplanned ecological and evolutionary experiments to address fundamental questions in nature. Here we analyzed both native and invasive populations of predatory northern pike (Esox lucius) to characterize landscape genetic variation, determine the most likely origins of introduced populations, and investigate a presumably postglacial population from Southeast Alaska of unclear provenance. Using a set of 4329 SNPs from 351 individual Alaskan northern pike representing the most widespread geographic sampling to date, our results confirm low levels of genetic diversity in native populations (average 𝝅 of 3.18 × 10-4) and even less in invasive populations (average 𝝅 of 2.68 × 10-4) consistent with bottleneck effects. Our analyses indicate that invasive northern pike likely came from multiple introductions from different native Alaskan populations and subsequently dispersed from original introduction sites. At the broadest scale, invasive populations appear to have been founded from two distinct regions of Alaska, indicative of two independent introduction events. Genetic admixture resulting from introductions from multiple source populations may have mitigated the negative effects associated with genetic bottlenecks in this species with naturally low levels of genetic diversity. Genomic signatures strongly suggest an excess of rare, population-specific alleles, pointing to a small number of founding individuals in both native and introduced populations consistent with a species' life history of limited dispersal and gene flow. Lastly, the results strongly suggest that a small isolated population of pike, located in Southeast Alaska, is native in origin rather than stemming from a contemporary introduction event. Although theory predicts that lack of genetic variation may limit colonization success of novel environments, we detected no evidence that a lack of standing variation limited the success of this genetically depauperate apex predator.

Contrasts in riverscape patterns of intraspecific genetic variation in a diverse Neotropical fish community of high conservation value.

Spatial patterns of genetic variation compared across species provide information about the predictability of genetic diversity in natural populations, and areas requiring conservation measures. Due to their remarkable fish diversity, rivers in Neotropical regions are ideal systems to confront theory with observations and would benefit greatly from such approaches given their increasing vulnerability to anthropogenic pressures. We used SNP data from 18 fish species with contrasting life-history traits, co-sampled across 12 sites in the Maroni- a major river system from the Guiana Shield -, to compare patterns of intraspecific genetic variation and identify their underlying drivers. Analyses of covariance revealed a decrease in genetic diversity as distance from the river outlet increased for 5 of the 18 species, illustrating a pattern commonly observed in riverscapes for species with low-to-medium dispersal abilities. However, the mean within-site genetic diversity was lowest in the two easternmost tributaries of the Upper Maroni and around an urbanized location downstream, indicating the need to address the potential influence of local pressures in these areas, such as gold mining or fishing. Finally, the relative influence of isolation by stream distance, isolation by discontinuous river flow, and isolation by spatial heterogeneity in effective size on pairwise genetic differentiation varied across species. Species with similar dispersal and reproductive guilds did not necessarily display shared patterns of population structure. Increasing the knowledge of specific life history traits and ecological requirements of fish species in these remote areas should help further understand factors that influence their current patterns of genetic variation.

Genetic Diversity in Natural Populations of Rhodiola Species of Different Adaptation Strategies.

Representatives of the Crassulaceae family's genus Rhodiola are succulents, making them distinctive in a changing environment. One of the most significant tools for analyzing plant resources, including numerous genetic processes in wild populations, is the analysis of molecular genetic polymorphism. This work aimed to look at the polymorphisms of allelic variations of the superoxide dismutase (SOD) and auxin response factor (ARF) gene families, as well as the genetic diversity of five Rhodiola species, using the retrotransposons-based fingerprinting approach. The multi-locus exon-primed intron-crossing (EPIC-PCR) profiling approach was used to examine allelic variations in the SOD and ARF gene families. We implemented the inter-primer binding site (iPBS) PCR amplification technique for genome profiling, which demonstrated a significant level of polymorphism in the Rhodiola samples studied. Natural populations of Rhodiola species have a great capacity for adaptation to unfavorable environmental influences. The genetic variety of wild populations of Rhodiola species leads to their improved tolerance of opposing environmental circumstances and species evolutionary divergence based on the diversity of reproductive systems.

Complexities of recapitulating polygenic effects in natural populations: replication of genetic effects on wing shape in artificially selected and wild-caught populations of Drosophila melanogaster.

Identifying the genetic architecture of complex traits is important to many geneticists, including those interested in human disease, plant and animal breeding, and evolutionary genetics. Advances in sequencing technology and statistical methods for genome-wide association studies have allowed for the identification of more variants with smaller effect sizes, however, many of these identified polymorphisms fail to be replicated in subsequent studies. In addition to sampling variation, this failure to replicate reflects the complexities introduced by factors including environmental variation, genetic background, and differences in allele frequencies among populations. Using Drosophila melanogaster wing shape, we ask if we can replicate allelic effects of polymorphisms first identified in a genome-wide association studies in three genes: dachsous, extra-macrochaete, and neuralized, using artificial selection in the lab, and bulk segregant mapping in natural populations. We demonstrate that multivariate wing shape changes associated with these genes are aligned with major axes of phenotypic and genetic variation in natural populations. Following seven generations of artificial selection along the dachsous shape change vector, we observe genetic differentiation of variants in dachsous and genomic regions containing other genes in the hippo signaling pathway. This suggests a shared direction of effects within a developmental network. We also performed artificial selection with the extra-macrochaete shape change vector, which is not a part of the hippo signaling network, but showed a largely shared direction of effects. The response to selection along the emc vector was similar to that of dachsous, suggesting that the available genetic diversity of a population, summarized by the genetic (co)variance matrix (G), influenced alleles captured by selection. Despite the success with artificial selection, bulk segregant analysis using natural populations did not detect these same variants, likely due to the contribution of environmental variation and low minor allele frequencies, coupled with small effect sizes of the contributing variants.

Chloroplast genomic characterization and phylogenetic analysis of Castanopsis hystrix

The structure and size of the chloroplast genome of Castanopsis hystrix was determined by Illumina HiSeq 2500 sequencing platform to understand the difference between C. hystrix and the chloroplast genome of the same genus, and the evolutionary position of C. hystrix in the genus, so as to facilitate species identification, genetic diversity analysis and resource conservation of the genus. Bioinformatics analysis was used to perform sequence assembly, annotation and characteristic analysis. R, Python, MISA, CodonW and MEGA 6 bioinformatics software were used to analyze the genome structure and number, codon bias, sequence repeats, simple sequence repeat (SSR) loci and phylogeny. The genome size of C. hystrix chloroplast was 153 754 bp, showing tetrad structure. A total of 130 genes were identified, including 85 coding genes, 37 tRNA genes and 8 rRNA genes. According to codon bias analysis, the average number of effective codons was 55.5, indicating that the codons were highly random and low in bias. Forty-five repeats and 111 SSR loci were detected by SSR and long repeat fragment analysis. Compared with the related species, chloroplast genome sequences were highly conserved, especially the protein coding sequences. Phylogenetic analysis showed that C. hystrix is closely related to the Hainanese cone. In summary, we obtained the basic information and phylogenetic position of the chloroplast genome of red cone, which will provide a preliminary basis for species identification, genetic diversity of natural populations and functional genomics research of C. hystrix.

Modeling the genetic footprint of fluctuating balancing selection: from the local to the genomic scale.

Natural selection not only affects the actual loci under selection but also leaves "footprints" in patterns of genetic variation in linked genetic regions. This offers exciting opportunities for inferring selection and for understanding the processes shaping levels of genetic variation in natural populations. Here, we develop analytical approximations based on coalescent theory to characterize the genetic footprint of a complex, but potentially common type of natural selection: balancing selection with seasonally fluctuating allele frequencies. As we show analytically and confirm with stochastic simulations, seasonal allele frequency fluctuations can have important (and partly unexpected) consequences for the genetic footprint of balancing selection. Fluctuating balancing selection generally leads to an increase in genetic diversity close to the selected site, the effect of balancing selection, but reduces diversity further away from the selected site, which is a consequence of the allele-frequency fluctuations effectively producing recurrent bottlenecks of allelic backgrounds. This medium- and long-range reduction usually outweighs the short-range increase when averaging diversity levels across the entire chromosome. Strong fluctuating balancing selection even induces a loss of genetic variation in unlinked regions, e.g. on different chromosomes. If many loci in the genome are simultaneously under fluctuating balancing selection this can lead to substantial genome-wide reductions in genetic diversity, even when allele-frequency fluctuations are small and local footprints are difficult to detect. Thus, together with genetic drift, selective sweeps and background selection, fluctuating selection could be a major force shaping levels of genetic diversity in natural populations.

Structure and molecular genetic diversity in natural populations and active germplasm banks of Passiflora cincinnata Mast.

Structure and molecular genetic diversity in natural populations and active germplasm banks of Passiflora cincinnata Mast.

Ecological niche, genetic variation in natural populations, and harvest maturity of Senegalia macrostachya (Rchb. ex DC) Kayl. & Boatwr., a promising wild and perennial edible-seeded crop

Senegalia macrostachya is a wild, perennial, and promising legume that can help alleviate food insecurity in sub-Saharan Africa’s drought-prone regions. However, it has been for a long time overlooked, underutilized, and scarcely studied. This study shed light on its ecological niche, genetic variation in natural populations, and seeds’ harvest maturity. Three populations of S. macrostachya were selected along an environmental gradient, and their structures, based on their plants’ pod characteristics (i.e., unique morphological differentiation trait amongst the plants), were assessed. Then, the seeds’ development was investigated following their morphological transformation, mass accumulation, and the mobilization of their proteins and secondary metabolites. S. macrostachya has revealed low genetic variation and fitness to poor soils, warm and semi-arid climates in sub-Saharan Africa, prone to droughts and low to medium agricultural productivity. The maturation of the seeds involved the accumulation of specific late embryogenesis abundant proteins (60, 48, and 14 kDa), identified as chilling-responsive dehydrins, and the degradation of the chlorophylls and carotenoids, which could be used as biochemical landmarks of the harvest maturity. Besides, an aging symptom (high seed abortion rate (14–20%)) was observed in the study populations. This work provides unprecedented information that will assist in predicting the eco-climate suitability and climate resilience, identifying the conservation strategies, and planning the harvesting, reforestation programs, and domestication of S. macrostachya. In parallel, the dehydrins identified from S. macrostachya can be tapped into for drought-resistant crop development. Further research is needed to evaluate the impacts of the mother plants’ aging and larger climate gradient on the performance (i.e., seed productivity and regeneration ability) of S. macrostachya.

VARIABILIDADE GENÉTICA DE POPULAÇÕES DE Parkia platycephala: SUBSÍDIO PARA DEFINIR ÁREAS DE COLETA DE SEMENTES

ABSTRACT Loss of genetic variability in natural populations affects negatively the adaptive and evolutive process of plant species. In this context, the objective of this work was to evaluate the existing genetic variability between and within natural populations of P. platycephala, using biometric characters of fruits and seeds and physiological characters of seeds and seedlings, and, thus, assess the potential for selection of mother trees, indicate areas for seed collection and use, and generate support for conservation and pre-breeding of plant species. A completely randomized experimental design was used, with 45 treatments (progenies) and four replications of 25 seeds. The progenies were evaluated in laboratory, using seeds collected from 45 mother trees sampled in three natural populations. The following characters were evaluated: seed germination percentage, germination speed index, and mean germination time; shoot and main root lengths; and seedling shoot and root dry weights. The data were subjected to RELM/BLUP analysis for estimating genetic parameters and correlations and to analyses of genetic divergence (UPGMA). The populations present genetic differences to each other and a significant variation between progenies for all characters evaluated, and the variation was greater within the populations. The characters evaluated present high genetic control; therefore, they can be used in analysis of genetic variability of populations and progenies of P. platycephala, thus assisting in the identification of areas for seed collection, conservation programs, and pre-breeding of the species.

A conservation genetics perspective on supportive breeding: A case study of the common nase (Chondrostoma nasus)

Abstract Supportive breeding programmes are becoming increasingly crucial for the conservation of many declining freshwater fishes such as the European common nase, Chondrostoma nasus. However, small relict populations are genetically highly vulnerable, and supportive breeding can have a detrimental impact on the genetic composition of the cultured offspring (e.g. as a result of inbreeding, genetic drift, and adaptation to captivity). This study monitored the genetic effects of a continuing supportive breeding programme of common nase by comparing the genetic diversity of two wild spawning populations with the respective wild offspring and the progeny from captive breeding originating from spawners of the two wild populations, considering genetic variability, genetic differentiation, and inbreeding effects using nine microsatellite markers. Despite low genetic differentiation, the offspring from captive breeding and from one of the natural populations (River Sims) were remarkably different genetically, as indicated by pairwise analyses of genetic divergence (FST from 0.028 to 0.070; Jost's DEST from 0.080 to 0.205) and the discriminant analysis of principal components. The mean number of alleles and mean allelic richness in the captive‐bred offspring and also in the wild offspring of the River Sims were lower than for wild populations of spawners and natural offspring of the River Mangfall, and signs of inbreeding effects were detected (F = 0.106 for captive bred and 0.048 for natural offspring). The observed effects can probably be attributed to the limited number of spawners (two females and three males) used for captive breeding. In addition, the results support previous evidence on recruitment problems of the Sims population, such as a reduced hatching success. Collecting fertilized eggs from the wild and rearing them in captivity (repatriation approach) could be an alternative to stripping a limited number of spawners and thereby to improve the conservation of genetic diversity of natural populations.

Genetic Diversity and Fine-Scale Spatial Genetic Structure of the Endangered Shrub Birch (Betula humilis Schrk.) Populations in Protected and Unprotected Areas

The genetic diversity of natural populations is a key factor in the success of long-term ecosystem protection. We studied the genetic diversity and spatial genetic structure (SGS) in three endangered shrub birch (Betula humilis) populations using seven nuclear microsatellite loci. The highest genetic variation was found in the restored Szuszalewo population in Biebrza National Park, where active prevention of thicket forest succession was recently conducted. The results of bottleneck tests were not statistically significant in each locality, although a genetic indication for population reduction was detected in the Rospuda stand, which is not actively protected. The Bayesian clustering, principal coordinates analysis, and FST estimates revealed the greatest difference between Magdzie Bagno and Rospuda samples. SGS was found in all B. humilis stands; however, it was the strongest in the Rospuda locality, where pollen and seed dispersal was limited by dense clusters of shrub birch ramets scattered among forest and brushwood plants. The weakest SGS, also supported by finding some sibling pairs in distant locations, was observed in the Szuszalewo population. The aforementioned results indicate that the active protection practices may impose an immediate beneficial effect on the restoration and maintenance of the B. humilis populations.

Multi-year evidence of unbiased sex ratios in hatchery and wild-reared age-0 lake sturgeon (Acipenser fulvescens)

Assessment of population sex ratios allows managers to forecast recruitment dynamics and loss of genetic diversity in natural populations and is important when the focal population is in low abundance and subject to demographic stochasticity. If levels of natural or artificial selection differ for males and females and levels of mortality likewise vary, lower levels of population recruitment, loss of genetic diversity, and genetic drift can occur. Lake sturgeon (Acipenser fulvescens) are a species of conservation concern, where restoration efforts increasingly rely on hatchery supplementation. Raising larvae to the juvenile stage can increase survival during important early life stages; however, knowledge is lacking concerning effects of artificial rearing environments on differential sex-specific survival before release. We genetically determined the sex of 1459 age-0 lake sturgeon from three cohorts (2016 through 2018) using PCR assays of the ALLWSex2 acipenserid sexing marker. Sexed individuals represented three groups: (1) wild-captured dispersing larvae that died during hatchery rearing, (2) wild-captured dispersing larvae that survived hatchery rearing to release, and (3) wild-captured, wild-raised age-0 individuals. Sex ratios of wild-captured larvae (dead + live) were nearly 50:50 in all years surveyed. We observed slight, but non-significant, directionality in sex ratios in the live and dead hatchery-reared larvae and in wild-captured age-0 individuals. Genetic sexing methods allow for analyses during prolonged pre-reproductive periods and associated variable environmental and demographic circumstances, in situations where physical determination of sex is not possible.

Impacts of Chronic Habitat Fragmentation on Genetic Diversity of Natural Populations of Prunus persica in China.

Wild peach is an important resource for improving existing peach varieties. However, the extant populations of wild peach show fragmented distribution due to human disturbance and geographic isolation. In this study, we used natural populations (or wild populations) of Prunus persica (Rosaceae) to assess the genetic effects of habitat fragmentation. A total of 368 individuals sampled from 16 natural populations were analyzed using 23 polymorphic simple sequence repeat (SSR) markers. Prunus persica maintained low within-population genetic variation and high level of genetic differentiation. Two genetic clusters were revealed based on three different methods (UPGMA, PCoA, and STRUCTURE). All populations showed a significant heterozygosity deficiency and most extant populations experienced recent reduction in population size. A significant isolation by distance (IBD) was observed with Mantel’s test. Compared to historical gene flow, contemporary gene flow was restricted among the studied populations, suggesting a decrease in gene flow due to habitat fragmentation. Habitat fragmentation has impacted population genetic variation and genetic structure of P. persica. For breeding and conservation purpose, collecting as many individuals as possible from multiple populations to maximize genetic diversity was recommended during the process of germplasm collection. In addition, populations from central China had higher genetic diversity, suggesting these populations should be given priority for conservation and germplasm collection.