This paper proposes a method that considers the bus net Fuzzy control strategy quickly and accurately for power. Due to the intermittent and fluctuating characteristics of distributed generation units in microgrid, the power quality will be reduced and the normal operation of microgrid will be affected. In this paper, empirical modal analysis fused with convolutional neural network algorithm is applied to the power control strategy of microgrid energy storage system to improve the economy and reliability of microgrid. The design process of the controller is analyzed, and fuzzy rules and membership functions are designed according to the effect requirements of the controller. Then, the center of gravity method is used to obtain the output power of the energy storage system. The simulation results show that the configuration scheme based on the optimization of the hybrid energy storage system in the whole life cycle in this paper not only ensures the stability of the energy storage system but also effectively avoids power fluctuations and stabilizes the peak shaving and valley filling rate. While improving the economy of the energy storage system, it also increases the service life of the energy storage system.