For a high production rate of microalgae, a high-cell-density culture is an effective strategy for reducing the light intensity per dry weight in the culture to avoid photoinhibition under high light conditions. However, under high cell density microalgae are exposed to nutrient-deficient conditions, resulting in a reduced biomass production rate. To enhance the production rate of high-value bioactives such as fucoxanthin and eicosatetraenoic acid (EPA) by the diatom Chaetoceros gracilis, a perfusion culture was operated at harvesting rates of 10â40 % under light intensities of 300â2000 ÎŒmol mâ2 sâ1. At a harvesting rate of 20 % under a high light intensity of 2000 ÎŒmol mâ2 sâ1, the dry weight increased, and the areal productivity reached 15.6 ± 1.3 g-dry weight (dw) mâ2 dâ1, which is comparable to the maximum value previously reported in diatoms. The high biomass production, even at a low harvesting rate of 20 %, could result from sufficient nutrient supply by perfusion culture. At a harvesting rate of 20 %, the EPA areal productivity achieved 183 mg-dw mâ2 dâ1 even under 2000 ÎŒmol mâ2 sâ1 due to the increase in the dry weight using the perfusion culture. However, the fucoxanthin content decreased under 2000 ÎŒmol mâ2 sâ1. A strong relationship was observed between the specific light intensity per dry weight and fucoxanthin content in C. gracilis. This relationship indicates that the fucoxanthin content does not increase unless the specific light intensity per dry weight is adjusted below 20 ÎŒmol g-dwâ1 sâ1. Thus, perfusion culture proved to be useful to control the biomass-specific light intensity for the effective production of EPA and fucoxanthin in C. gracilis under high light conditions expected for outdoor culture.