Fusarium Ear Rot Research Articles

Comparative genomics of Fusarium species causing Fusarium ear rot of maize.

Fusarium ear rot (FER), caused by the fungal pathogen Fusarium verticillioides, stands as one of the most economically burdensome and pervasive diseases affecting maize worldwide. Its impact on food security is particularly pronounced due to the production of fumonisins, toxic secondary metabolites that pose serious health risks, especially for livestock. FER disease severity is complex and polygenic, with few resistance (R) genes being identified for use in breeding resistant varieties. While FER is the subject of several breeding programs, only a few studies have investigated entire populations of F. verticillioides with corresponding virulence data to better understand and characterize the pathogenomics. Here, we sequenced and compared the genomes of 50 Fusarium isolates (43 F. verticillioides and 7 other Fusarium spp.) that were used to inoculate a diverse maize population. Our objectives were to elucidate the genome size and composition of F. verticillioides, explore the variable relationship between fumonisin production and visual disease severity, and shed light on the phylogenetic relationships among the isolates. Additionally, we conducted a comparative analysis of the nucleotide variants (SNPs) and the isolates' effectoromes to uncover potential genetic determinants of pathogenicity. Our findings revealed several promising leads, notably the association of certain gene groups, such as pectate lyase, with disease severity. These genes should be investigated further as putative alleles for breeding resistant maize varieties. We suggest that, beyond validation of the alleles identified in this study, researchers validate each phenotypic dataset on an individual basis, particularly if considering fumonisin concentrations and when using diverse populations. Our study underscores the importance of genomic analysis in tackling FER and offers insights that could inform the development of resilient maize cultivars. By leveraging advances in genomics and incorporating pathogen populations into breeding programs, resistance to FER can be advanced.

First Report of Leaf Rot on Catalpa bungei caused by Fusarium verticillioides in China.

Catalpa bungei originates from China. Because of its well-developed root system and strong resistance to wind and soil, it is one of the top ten recommended species of ecological management (Jian et al., 2022). In September 2023, a severe leaf rot of C. bungei was observed at Lanlake farm (500 acres) in Nanyang (33°3'23" N, 112°28'50" E), China. The incidence rate of leaf rot reached 45% (n = 100). The pale-yellow spots initially appeared on the adaxial surface of leaf margins, subsequently enlarging to form irregular black rot lesions, with the yellow halos around the necrotic area of the lesion, ultimately causing the entire leaves to wither. Diseased leaves (20) were collected, cut into pieces, sterilized, and then placed on potato dextrose agar (PDA). A total of 25 purified fungal strains were isolated, and three strains (QS2-1, QS2-2, QS2-3) from distinct areas were selected for further analysis. Each strain produced abundant aerial mycelium, initially white, which later developed purple pigments. The aerial conidiophores were sparsely branched, ending with verticillate phialides. The strains generally produced many more microconidia than macroconidia on PDA media. Microconidia were clavate and measured 3.9 to 6.6 × 1.1 to 2.4 μm (n = 50). To produce macroconidia, we used YPG liquid medium (0.3% yeast extract, 1% peptone, and 2% glucose) with shaking (200 r.p.m.) for 5 days. Macroconidia were slender, straight, and measured 19.5 to 27.1 × 1.9 to 3.5 μm, with 3 to 5 septa (n = 50). The morphological characteristics matched the species description of Fusarium verticillioides (Sacc.) Nirenberg 1976 (Leslie and Summerell, 2006). The rDNA internal transcribed spacer (ITS), β-tubulin gene (tub2), translation elongation factor 1-alpha gene (tef1), calmodulin (cmdA), RNA polymerase II largest subunit (rpb1), and RNA polymerase II second largest subunit (rpb2) were amplified for molecular identification (O'Donnell et al., 2022). The sequences were submitted to GenBank with accession numbers OR741762, OR741763, OR741765 (ITS), OR762222, OR762223, OR939807 (tub2), OR939799, OR939800, PQ035927 (tef1), OR778611, OR939808, OR939809 (cmdA), PQ035921, PQ035922, PQ035923 (rpb1), and PQ035924, PQ035925, PQ035926 (rpb2). BLASTn analysis of QS2-1 sequences exhibited 99% similarity with F. verticillioides sequences (strains CBS 576.78) MT010888 of cmdA (711/713, 99%), MT010956 of rpb1 (1790/1791, 99%), and MT010972 of rpb2 (868/870, 99%). A phylogenetic tree was constructed using concatenated sequences along with the sequences of the type strains employing the neighbor-joining method, showing the three strains formed a clade with the type strain CBS 576.78. Pathogenicity was tested on 10 healthy potted seedlings by spraying them with a conidial suspension (106 conidia ml-1), while 5 seedlings were sprayed with sterilized water as a control. The plants were placed in climate incubators. Ten days after inoculation, typical lesions were observed on the treated plants, but not on the control group. The reisolated strains were identified as F. verticillioides through morphological characterization, thus fulfilling Koch's postulates. F. verticillioides is known to cause Fusarium ear rot on maize, and other plants including Brassica rapa (Akram et al., 2020) and Schizonepeta tenuifolia (Li et al., 2024). This is the first documented instance of F. verticillioides causing leaf rot on C. bungei globally. Identifying the pathogen is critical to implementing effective disease management strategies, especially in choosing proper pesticide agents and screening disease-resistant varieties.

Assessing the effect of provitamin a on maize field resistance to aflatoxin and fumonisin contamination

Vitamin A deficiency in sub-Saharan Africa is mainly being addressed through crop biofortification. Several high provitamin A (PVA) maize varieties have been released as part of these measures. However, these varieties are grown in areas where Aspergillus ear rot (AER) and Fusarium ear rot (FER) frequently occur, leading to contamination with mycotoxins, which in turn reduce the yield and grain quality. Chronic mycotoxin exposure leads to serious public health problems. Therefore, PVA maize varieties should be resistant to mycotoxin contamination. In a previous study, we generated 120 PVA hybrids by crossing 60 PVA inbreds and two testers with contrasting PVA content. Several inbreds resistant to aflatoxin were detected through laboratory-based kernel screening assays. In the current study, 21 PVA inbred lines with varying carotenoid content inoculated with toxigenic isolates of A. flavus and F. verticillioides were evaluated in field trials conducted at two locations in Nigeria for resistance to ear rots and mycotoxin production. Inbred lines resistant to AER, FER, aflatoxin and fumonisin contamination were identified. High PVA inbred lines were less susceptible to the ear rots, aflatoxin, and fumonisin than those with low PVA content. There were negative correlations between PVA content and each of AER (r = −0.28, P < 0.0001), FER (r = −0.37, P < 0.0001), aflatoxin (r = −0.15, P < 0.05), and fumonisin (r = −0.27, P < 0.0001). Three promising inbred lines were resistant to both aflatoxin and fumonisin. Moreover, the inbred TZI1715 combined resistance to AER, FER, aflatoxin, and fumonisin with desirable general combining ability for high β-carotene and total PVA content. These results suggest that the PVA biofortified maize developed to address vitamin A deficiency can also contribute to reduced exposure to aflatoxin and fumonisin.

First report of Fusarium verticillioides causing leaf rot on Artemisia argyi in China.

Artemisia argyi is a perennial herb native to East Asia. It is an important traditional Chinese medicinal plant known for its strong flavor and medicinal effects. It is rich in active ingredients and has a wide range of biological activities, including anti-inflammatory, antioxidant, and immune regulation properties. From May to July in 2023, a serious leaf rot outbreak occurred on A. argyi in several farms (approximately 200 acres) in Tanghe county (32°46'44" N, 112°43'13" E), Henan Province, China. The incidence rate reached 65% (n=200). Pale yellow spots (1-2 cm in diameter) first appeared on the leaves, then expanded to form irregular yellowish-brown lesions, eventually causing the entire leaves to wither. Diseased leaves (30) were collected and cut into 5 x 5 mm2 pieces in the areas between infected and healthy tissues. The excised plant tissues were sterilized in 75% ethanol and 1% sodium hypochlorite solution for 30 seconds and one minute, respectively. The tissues were then rinsed with sterile water and placed on potato dextrose agar (PDA) followed by incubating at 25 °C for 3 days. The isolated strains belonged to the genera Fusarium and Alternaria. After pathogenicity verification, 25 purified Fusarium strains were obtained. Three representative strains (AC-Q, AC-X, AC-Y) from different regions were used for further studies. Each strain formed abundant aerial mycelium that was initially white and later developed into purple pigments. Aerial conidiophores were sparsely branched, terminating with verticillate phialides. Macroconidia were slender, straight, and measured 21.8 to 47.5 × 3.1 to 4.4 μm, with two to four septa. Microconidia were clavate and measured 8.31 to 11.6 × 2.1 to 3.5 μm. Morphological characteristics were consistent with the species description of Fusarium verticillioides (Sacc.) Nirenberg 1976 (Leslie and Summerell, 2006). The rDNA internal transcribed spacer (ITS), β-tubulin gene (tub2), translation elongation factor 1-alpha gene (tef1), calmodulin (cmdA), RNA polymerase II largest subunit (rpb1) and RNA polymerase II second largest subunit (rpb2) were amplified for molecular identification (O'Donnell et al., 2022). The sequences were deposited in GenBank with accession Nos. OR960548, OR960552, OR960555 (ITS), OR972413, OR972414, OR972415 (tub2), OR797685, OR797686, OR797687 (tef1), OR972410, OR972411, OR972412 (cmdA), PP035106, PP035107, PP035108 (rpb1), and PP035109, PP035110, PP035111 (rpb2). BLASTn analysis of AC-Q sequences exhibited 99 to 100% similarity with F. verticillioides sequences (strains CBS 576.78) MT010888 of cmdA, MT0109566 of rpb1, and MT010972 of rpb2. A phylogenetic tree was constructed with concatenated sequences (tub2, tef1, cmdA, rpb1, rpb2), alongside the sequences of the type strains using the neighbor-joining method. The three strains formed a clade with the type strain CBS 576.78 of F. verticillioides, and were separated from other Fusarium spp. These morphological and molecular identifications indicated that the pathogen was F. verticillioides. Pathogenicity was tested on 10 healthy 2-month-old potted seedlings by spraying them with a conidial suspension (106 conidia ml-1), and 5 seedlings were sprayed with sterilized water as a control. The plants were placed in a climate incubator at 28°C and a relative humidity of approximately 90%. Ten days after seedling inoculation, typical lesions were observed on the treated plants, except in the control group. The reisolated strains were identified as F. verticillioides by morphological and molecular characterization, fulfilling Koch's postulates. F. verticillioides is known to cause Fusarium ear rot on maize, as well as diseases on other plants in China such as Brassica rapa (Akram et al., 2020) and Schizonepeta tenuifolia (Li et al., 2024). This is the first report of F. verticillioides causing leaf rot on A. argyi worldwide. Identification of the pathogen is crucial for implementing management approaches to reduce yield losses.

Comprehensive diallel analysis of combining ability and heterosis to Fusarium verticillioides ear rot resistance in maize

AbstractMaize (Zea mays L.) Fusarium ear rot (FER), which is caused by the fungal pathogen Fusarium verticillioides, is a major ear disease affecting maize production in China. Developing resistant maize hybrids is a cost‐effective and environmentally friendly method of reducing yield losses due to FER. Using the nail punch inoculation method, 17 highly resistant and 16 highly susceptible inbred lines were identified in this study, and a large‐scale maize hybrid consisting of 528 F1’s was produced using a half‐diallel cross model. The hybrids were inoculated with F. verticillioides in 6 year–location environment combinations during 2020–2022. Our results showed that estimates of genotypic, environmental, and genotype × environment interaction variance components were very significant (p &lt; 0.001). All the crosses generated from highly resistant inbred lines exhibited high kernel resistance, whereas those generated from highly susceptible inbred lines mostly exhibited high susceptibility to FER. Crosses between resistant and susceptible inbred lines showed intermediate resistance to FER. The general combining ability (GCA) effect was greater than the specific combining ability effect across multiple environments, indicating that the inheritance of FER resistance was mainly influenced by additive genetic effects. The correlation coefficient between the expected GCA value and hybrid resistance was 0.789, whereas that between the mid‐parent value and hybrid resistance was only 0.644. Inbred performance per se and their corresponding hybrids across multiple environments were significantly correlated (r = 0.823). However, no relationship was observed between the FER resistance of F1’s and that of their parental heterotic groups.

Maize Kernel-Associated Metagenomes Reveal Potential Microbe–Microbe Interactions that Underlie Fusarium Ear Rot Disease

As an alternative to host resistance, transgenic expression of entomocidal and antimicrobial proteins from Bacillus thuringiensis ( Bt) in maize can mitigate Fusarium ear rot (FER). This study evaluated FER in Bt and conventional maize and the role of microbes in the kernel-associated metagenome using quantitative reduced representation sequencing. Our results revealed significant differences in FER severity across environments and varieties and between inoculation treatments. The lower FER scores of conventional maize Spectrum 6416 relative to other varieties highlighted resistant alleles in maize germplasm, whereas strong correlations indicated FER-induced yield loss. Mitigation of FER by transgenes was validated by about threefold enrichment of Fusarium verticillioides ( Fv) postinoculation compared with nonsignificant Fv enrichment in conventional maize. Although the major causal pathogen of FER, Fv, was the most abundant species in the metagenomes ( r = 0.41 to 0.49), a similar degree of correlation was observed between FER and several Fusarium spp. ( r = 0.2 to 0.56). The potential FER-suppressing properties of Talaromyces stipitatus and Ustilago maydis were indicated by negative correlations with FER ( r = –0.22 to –0.42), Fv, and some Fusarium spp. The more FER-resistant varieties consistently enriched for potential FER-suppressing Burkholderia cenocepacia (negatively correlated with Fv). This suggests host genetic background-dependent recruitment of beneficial microbes that suppress pathogens and that microbe–microbe interactions play a role in FER severity. Quantitative and species/strain-level metagenomic profiles hold promise for identifying robust disease-suppressing microbes and microbes that act in synergy with pathogens and for developing holobiont-aware breeding strategies that account for host–microbiome coevolution and host genotype, microbiome/metagenome, and environment interactions. [Formula: see text] Copyright © 2024 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license .

Phenotypic characterisation and evaluation of resistance to Fusarium ear rot, fumonisin contamination and agronomic traits in a collection of maize landraces

Context Maize is a major crop in Italy and is constantly affected by the fungus Fusarium verticillioides, producing ear rot and grain contamination by fumonisins. Finding new genotypes resistant to Fusarium infection is an important goal for the improvement of maize cultivation. Aims The objective of this work was to test a collection of 33 traditional landraces from the Emilia-Romagna (Italy) region for Fusarium ear rot (FER) severity, fumonisin content, and their agronomic performance. Methods Primary ears were artificially inoculated with a toxigenic strain of F. verticillioides in a 2-year experimental trial. The landrace ‘Nostrano di Storo’ and a commercial hybrid of FAO maturity class 300 were also included and used as comparisons representing a well-known and highly valued landrace and a modern flint hybrid, respectively. Key results The collection showed great phenotypic variability for all the agronomic traits assessed and responded differently to the Fusarium infection with percentages of FER ranging from 6.6% to 49.3%, and fumonisins from 4.3 mg/kg to 34.5 mg/kg. Thirteen and six landraces displayed FER percentages and fumonisin content very similar to the hybrid, respectively. Moreover, eight landraces exhibited grain yield values comparable to the hybrid. Interestingly, Va221, Va227 and EMR03 showed the best combination among these three traits. Conclusions This local material can be considered suitable for breeding purposes targeting the development of FER and fumonisin resistant germplasm. Implications The collection may represent a resource for future research aimed at evaluating the response to multiple pathogens and their associated mycotoxins.

Fungal Species and Mycotoxins Associated with Maize Ear Rots Collected from the Eastern Cape in South Africa.

Maize production in South Africa is concentrated in its central provinces. The Eastern Cape contributes less than 1% of total production, but is steadily increasing its production and has been identified as a priority region for future growth. In this study, we surveyed ear rots at maize farms in the Eastern Cape, and mycotoxins were determined to be present in collected samples. Fungal isolations were made from mouldy ears and species identified using morphology and DNA sequences. Cladosporium, Diplodia, Fusarium and Gibberella ear rots were observed during field work, and of these, we collected 78 samples and isolated 83 fungal strains. Fusarium was identified from Fusarium ear rot (FER) and Gibberella ear rot (GER) and Stenocarpella from Diplodia ear rot (DER) samples, respectively. Using LC-MS/MS multi-mycotoxin analysis, it was revealed that 83% of the collected samples contained mycotoxins, and 17% contained no mycotoxins. Fifty percent of samples contained multiple mycotoxins (deoxynivalenol, 15-acetyl-deoxynivalenol, diplodiatoxin and zearalenone) and 33% contained a single mycotoxin. Fusarium verticillioides was not isolated and fumonisins not detected during this survey. This study revealed that ear rots in the Eastern Cape are caused by a wide range of species that may produce various mycotoxins.

Biophysical factors and agronomic practices associated with Fusarium ear rot and fumonisin contamination of maize in multiple agroecosystems in Ethiopia

AbstractIn Ethiopia, Fusarium ear rot (FER) reduces yield, quality, and safety of maize and negatively impacts the economics of maize growers. However, there is almost no published information on geographic distribution, severity, or causal agents of FER in Ethiopia or levels of preharvest fumonisin contamination, biophysical factors, and agronomic practices associated with FER. Therefore, we surveyed 480 agricultural fields located in 10 Ethiopian zones to assess the incidence and severity of FER as well as agricultural practices and biophysical factors associated with each field. We also determined the concentration of fumonisin in samples taken from the fields. Results revealed that FER was prevalent with varied disease intensity and yield loss levels among the assessed zones. The highest percent severity index (PSI) was recorded in Mirab Wellega (33.2%), with a correspondingly maximum estimated mean grain yield loss of 13.6%, while the minimum disease severity 11.3% and yield loss 5.4% were recorded from the Ilubabor zone. Fumonisins (FB1, FB2, FB3, and FB4) were detected in 98% of the samples, and the levels ranged from 5 to 7517 μg kg−1 (mean, 540 μg kg−1 and median 82.4 μg kg−1). The mean fumonisin contamination of 1524.4, 1316.8, 744.5, and 742.6 μg kg−1 was recorded for Mirab Welega, Misraq Wellega, Assosa, and Hawassa zones, respectively. In total, about 11.3% of the maize samples exceeded the maximum tolerable total fumonisin limit set by the European Union in maize flour (&gt;1000 μg kg−1) and are not suitable for human consumption. Disease severity highly significantly (p &lt; 0.0001) correlated with biophysical factors such as insect infestation (r = 0.60, p &lt; 0.0001) and weed infestation (r = 0.64, p &lt; 0.0001) and agronomic practices such as nitrogen phosphorus sulfur fertilizer application rate (r = −0.39, p &lt; 0.0001) and insecticide spray frequency (r = −0.55, p &lt; 0.0001). Other agronomic practices such as earlier or later sowing date and inter‐cropping systems significantly reduced (p &lt; 0.001) FER incidence, PSI, and the associated grain yield loss. There was significant (p &lt; 0.0001) variation among maize cultivars currently under production in reaction against FER disease intensity. Moreover, the result of the present study attests a strong positive association (p &lt; 0.001) between disease intensity and maize fumonisin concentrations. Generally, the study revealed a wider distribution of FER and fumonisin contamination of maize in the southwest major maize‐growing belts of Ethiopia. Thus, appropriate integrated pre‐harvest ear rot management strategies including the use of resistant cultivars and suitable agronomic practices are recommended for the management of FER and the associated mycotoxins in Ethiopia.

Behavior of Some Maize Hybrids to the Attack of the European Corn Borer (Ostrinia nubilalis Hbn.) and Fusarium Ear Rot (Fusarium sp.)

European corn borer (Ostrinia nubilalis Hbn.) is the most important pest of maize, for the conditions on Romania. Through injuries produced, both on the stem and ears, it favors the penetration of the spores of Fusarium sp. in the plant. In this paper, some results were presented regarding the reaction of the new maize creations and some perspective hybrids from Agriculture Research and Development Station Turda (ARDS Turda), to the attack of the European corn borer (Ostrinia nubilalis Hbn.) larva and the fusarium ear rot (Fusarium sp.), in the period 2020-2022. The climatic conditions during the summer period, recorded at ARDS Turda, were more favorable to the attack in 2021 and 2022 compared to 2020 for the European corn borer, respectively, more favorable to the attack in 2022 compared to 2021 for the fusarium ear rot. Turda 380 and Turda 2020 hybrids showed a tolerance to the attack of European corn borer larva and the lowest values of fusarium ear rot attack. Turda 332, HST A483-11 and HST A483-39 hybrids were more sensitive both to the attack of Ostrinia nubilalis and Fusarium sp.

Evaluating corn for resistance to the main fungal pathogens and the Asian corn borer

The paper presents the results of a study on 36 corn genotypes of Russian and foreign breeding origin under the conditions of the south of the Russian Far East. The research goal was to select corn varieties (hybrids) with the highest resistance to fungal pathogens and Ostrinia furnacalis Guenee for further use as breeding material. Diseases and pests cause significant damage to corn under the conditions of Primorsky kray. The research identified the following specimens that had the highest tolerance (the frequency of occurrence did not exceed 45%; the degree of disease progression was below 10%) to northern corn leaf blight (Helminthosporium turcicum Pass) and Fusarium ear rot (Fusarium moniliforme Scheldon): Krasnodarsky 291, LONG KEN 134, LONG KEN 1108, LONG KEN 1110, and KENDGY 717. Ostrinia furnacalis Guenee caused little damage (the degree of damage was 0.2-0.5) to Mashuk 175, Mashuk 250, Mashuk 300, N’yuton, KENDGY 717, DEMEYA 4, KENDGY 515, KENDGY 510, and LONG KEN 1110. High yield (7.2-8.8 t/ha) characterized Mashuk 250, N’yuton, Stella, KENDGY 717, KENDGY 510, DEMEYA 4, KENDGY 515, LONG KEN 134, and LONG KEN 1110.

Field evaluation of specimens from a corn collection for resistance to Helminthosporium turcicum Pass and Fusarium moniliforme Scheldon

The paper presents research data on the spread and development of the main fungal pathogens of corn. Corn holds a prominent place among the other grain crops grown in Primorsky kray. Corn is susceptible to more than 120 different pathogens. Helminthosporium turcicum Pass and Fusarium moniliforme Scheldon cause significant damage to zea mays plants under the conditions of the south of the Russian Far East. The research evaluated 148 corn genotypes. The progression degree of northern leaf blight ranged from 8 to 70% at the kernel milk stage depending on the specimen (the prevalence was 38-100%); the occurrence frequency of Fusarium ear rot varied within 0-90%. The conducted research resulted in the identification of genotypes with resistance to these pathogens. The following genotypes might be valuable for further breeding: S-1847, k-23428 B, k-24825, R-nj purple, k-22077, k-21477, S-430 V, MP-162-B, and varieties Sakharnaya and Indeiskaya krakhmalistaya.

Atoxigenic Aspergillus flavus (Aflasafe KE01) application reduces Fumonisin contamination in maize in lower Eastern Kenya

Management of fumonisin contamination in maize has been a challenge largely because there are no effective management measures for Fusarium ear rots. Maize varieties that are resistant to fumonisin contamination are also lacking. This study was conducted to determine the efficacy of atoxigenic Aspergillus flavus (Aflasafe KE01) on fumonisin contamination of maize. The study was carried out in four sub-counties in lower Eastern Kenya. Twenty-four maize fields were selected in each sub-county; where 12 fields were treated with Aflasafe KE01, while 12 fields comprised the untreated controls. Aflasafe KE01 was applied at a rate of 5 kg/ha and 10kg/ha by hand broadcasting in maize fields two to three weeks before tasselling of maize. Fumonisin level in the maize samples was determined using Accuscan Pro-reader enzyme-linked immunosorbent assay (ELISA). The results showed that application of Aflasafe KE01 reduced fumonisin in the maize from the Aflasafe KE01 treated fields by up to 68% compared to samples from untreated fields. About 62.5% of the maize fields treated with 5kg/ha of Aflasafe KE01 met the European Commission regulatory threshold of ≤2ppm for total fumonisin as compared to about 45% from the control fields. This indicates that Aflasafe KE01 is a potential biopesticide for the management of fumonisin in maize. Therefore, efficacy of Aflasafe KE01 to reduce fumonisin contamination of other key staples in Kenya should also be evaluated. Key words: Aflasafe KE01, atoxigenic Aspergillus sp., fumonisins, maize.

Bacterial endophytes inhabiting desert plants provide protection against seed rot caused by Fusarium verticillioides and promote growth in maize.

Fusarium maize ear and root rot disease caused by Fusarium verticillioides has become one of the most serious fungal diseases associated with maize production. Due to their abilities to promote plant development and manage diseases, bacterial endophytes provide a more promising approach for treating this vascular disease. This work was undertaken for the selection and identification of promising isolates as plant growth promoters and biocontrol agents against F. verticillioides in maize agroecosystems. A screening procedure consisting of in vitro and in situ tests was applied to 27 endophytic strains originating from desert plants: Euphorbia antiquorum, Calotropis procera, and Alcasia albida. In vitro studies indicated that the bacteria exhibited variable results in biocontrol, endophytism, and plant growth-promoting traits. In addition, in situ plant growth promotion and biocontrol experiments allowed the identification of the most promising bacterial endophytes. In vitro and in situ comparative study results indicated a low correlation. Our data revealed that in situ screening must be used as the method of selection of biocontrol agents against Fusarium ear and root rot disease. Based on in situ results, seven potent strains were selected and identified as Bacillus subtilis, Bacillus velezensis, Bacillus tequilensis, Stenotrophomonas maltophilia, and Klebsiella pneumoniae. The results of this study showed that the selected strains seem to be promising candidates to be exploited as biofertilizers and biocontrol agents against Fusarium maize ear and root rot disease. © 2023 Society of Chemical Industry.

Genome-wide association study and pathway analysis to decipher loci associated with Fusarium ear rot resistance in tropical maize germplasm

Breeding for host resistance is the most efficient and environmentally safe method to curb the spread of fusarium ear rot (FER). However, conventional breeding for resistance to FER is hampered by the complex polygenic nature of this trait, which is highly influenced by environmental conditions. This study aimed to identify genomic regions, single nucleotide polymorphisms (SNPs), and putative candidate genes associated with FER resistance as well as candidate metabolic pathways and pathway genes involved in it. A panel of 151 tropical inbred maize lines were used to assess the genetic architecture of FER resistance over two seasons. During the study period, seven SNPs associated with FER resistance were identified on chromosomes 1, 2, 4, 5, and 9, accounting for 4–11% of the phenotypic variance. These significant markers were annotated into four genes. Seven significant metabolic pathways involved in FER resistance were identified using the Pathway Association Study Tool, the most significant being the superpathway of the glyoxylate cycle. Overall, this study confirmed that resistance to FER is indeed a complex mechanism controlled by several small to medium-effect loci. Our findings may contribute to fast-tracking the efforts to develop disease-resistant maize lines through marker-assisted selection.

Needle inoculation: an efficient cob inoculation technique for Fusarium ear rot of maize

Needle inoculation: an efficient cob inoculation technique for Fusarium ear rot of maize

Development of an RPA-based CRISPR/Cas12a assay in combination with a lateral flow strip for rapid detection of toxigenic Fusarium verticillioides in maize

Fusarium verticillioides is an important phytopathogenic fungus that poses a threat to maize yield and quality in global maize-growing regions by causing Fusarium ear and stalk rot. The fungus is known to produce fumonisins, which are toxic secondary metabolites and have been associated with high incidences of esophageal cancer. The FUM1 gene is responsible for producing a crucial polyketide synthase required for fumonisin biosynthesis and is present in all pathogenic strains of F. verticillioides. This study aims to develop a rapid and accurate detection assay for F. verticillioides based on the FUM1 gene, by utilizing Chelex-100 resin for DNA extraction, recombinase polymerase amplification coupled with CRISPR/Cas12a cleavage and lateral flow detection (RPA-Cas12a-LFD) assay. The developed RPA-Cas12a-LFD assay exhibited remarkable specificity for F. verticillioides, and the lowest limit of detection was 2 ag DNA of F. verticillioides. The entire diagnostic process was completed in just 73 min, including sample DNA extraction, RPA reaction, Cas12a cleavage, and result readout. Furthermore, RPA-Cas12a-LFD assay was found to be equivalent to single-spore isolation and partial translation elongation factor 1α gene (TEF-1α) sequencing in identifying diseased samples in the field. In summary, this accurate and portable detection equipment has great potential for detecting and recognizing F. verticillioides, especially in areas where sophisticated lab equipment is not available.

Fusarium ear rot resistance in South American popcorn lines

Fusarium ear rot resistance in South American popcorn lines

Maize kernel metabolome involved in resistance to fusarium ear rot and fumonisin contamination.

Fusarium verticillioides poses a threat to worldwide maize production due to its ability to infect maize kernel and synthesize fumonisins that can be accumulated above safety levels for humans and animals. Maize breeding has been proposed as key tool to decrease kernel contamination with fumonisins, but metabolic studies complementary to genomic approaches are necessary to disclose the complexity of maize resistance. An untargeted metabolomic study was proposed using inbreds genetically related but with contrasting levels of resistance in order to uncover pathways implicated in resistance to Fusarium ear rot (FER) and fumonisin contamination in the maize kernel and to look for possible biomarkers. Metabolite determinations were performed in kernels collected at 3 and 10 days after inoculation with F. verticillioides (dat). Discriminant metabolites between resistant and susceptible RILs were rather found at 10 than 3 dat, although metabolite differences at later stages of colonization could be driven by subtle variations at earlier stages of infection. Within this context, differences for membrane lipid homeostasis, methionine metabolism, and indolacetic acid conjugation seemed highly relevant to distinguish between resistant and susceptible inbreds, confirming the polygenic nature of resistance to FER and fumonisin contamination in the maize kernels. Nevertheless, some specific metabolites such as the polyamine spermidine and/or the alkaloid isoquinoline seemed to be promising indirect selection traits to improve resistance to FER and reduce fumonisin accumulation. Therefore, in vitro and in vivo experiments will be necessary to validate the inhibitory effects of these compounds on fumonisins biosynthesis.

First report ofFusarium meridionalecausing Fusarium head blight of wheat in Henan Province, China.

Fusarium graminearum and F. asiaticum have been found as a major cause of Fusarium head blight (FHB) of wheat (Triticum aestivum L.), especially in Henan Province of China (Zhang et al. 2014; Xu et al. 2021). In May 2021, a survey to determine the composition of Fusarium species infecting wheat heads was conducted in commercial fields in Henan. A total of 395 diseased spikes with premature whitening symptom were collected from 31 commercial fields in Henan. Symptomatic spikelets were excised, surface-sterilized for 10 s in 70% ethanol followed by 1 min in 3% sodium hypochlorite, rinsed three times with autoclaved distilled water, and then plated onto potato dextrose agar (PDA) medium. Isolated colonies that resembled Fusarium species were transferred to fresh PDA plates and purified using a single spore method. Species were identified based on sequence analysis of the translation elongation factor-1α (TEF) and trichothecene 3-Oacetyltransferase (Tri 101) gene (Proctor et al. 2009). The results indicated that F. graminearum (43.3%), F. asiaticum (47.8%), F. pseudograminearum (6.6%) were the main causal agents of FHB in Henan. However, nine isolates (2.3%) were found to be identical to F. meridionale by sequence comparison in GenBank, and eight isolates of which came from three fields with 1% to 2% diseased spikes near Reservoir Luhun (34.1255° N, 112.1111° E, altitude: 388 m above sea level), Songxian County of Henan. The isolates of F. meridionale were transferred onto carnation leaf agar (CLA) and incubated at 20℃ under black light blue illumination. Macroconidia were abundant, relatively slender, curved to almost straight, commonly six- to seven-septate, and 27.0 to 61.0 (average 44.0) μm × 3.2 to 6.8 (average 5.3) μm. Microconidia were not observed. The TEF sequences (Accession nos. OM460748 to OM460756) and the Tri 101 sequences (OM460759 to OM460767) of the nine isolates showed 99 to 100% similarity with the TEF and Tri 101 sequences of F. meridionale NRRL 28436 and NRRL 28723 (AF212435 and AF212436 (TEF); AF212582 and AF212683 (Tri 101)). To complete Koch's postulates, the pathogenicity of the fungus was tested by using the single floret inoculation method by injecting 20-μl conidial suspension (5 × 105 conidia per milliliter) into healthy inflorescences of wheat cultivar Bainong 207 at anthesis in the field. Another 30 healthy inflorescences were injected with sterile distilled water. The heads were covered with polyethylene bags that were removed after 2 days. Twenty days after inoculation, while control inflorescences were asymptomatic, the F.meridionale-inoculated inflorescences showed 12% bleached spikelets per spike. By using the methodology described above, the fungus was re-isolated from infected spikelets of inoculated wheat heads but not from the controls. Although F.meridionalehas frequently been reported in association with Fusariumear rot (FER) of maize in Chongqing City and Gansu Province (Zhang et al. 2014; Zhou et al. 2018), and riceFER in Sichuan Province (Dong et al. 2020), to our knowledge, this is the first report of F. meridionale from diseased wheat heads in Henan, China. Further investigation is needed to gain a better understanding of this species by collecting isolates from different cropping system in Henan, which maize-wheat and rice-wheat rotation fields have coexisted in the region.