Fungal Pathogen Macrophomina Phaseolina Research Articles

Effect of drought stress during seed development on charcoal rot and yield of soybean.

The primary controls for charcoal rot in soybean, caused by the fungal pathogen Macrophomina phaseolina, are to avoid drought stress and to plant a moderately resistant cultivar. The effects of irrigation and cultivar were determined in 2011 and 2013 at the Lon Mann Cotton Research Station, Marianna, AR. Four soybean cultivars (Hutcheson, Osage, Ozark, and R01581F), were planted in plots with or without added M. phaseolina inoculum and subjected to three furrow irrigation regimes: full season irrigation (Full), irrigation terminated at R5 (CutR5), and non-irrigated (NonIrr). Normalized difference vegetative index (NDVI) was measured at R3 and R6. At harvest, plants and yields were collected. Roots and stems were split and the extent of visible colonization by M. phaseolina microsclerotia was assessed in the roots with a 1-5 scale (RSS) and the percent plant height stem discoloration (PHSD) measured. Precipitation in September and October was 54 and 65% below the 30-year average in 2011 and 2013, respectively. The CutR5 irrigation treatment resulted in one less irrigation than Full each year, but CutR5 NDVI's at R6 and yields were significantly lower than those with Full and not significantly different than those of NonIrr. The CutR5 RSS ratings were greater than either Full or NonIrr. Plant colonization by M. phaseolina was negatively correlated to yield in 2011 but not in 2013. No premature plant death caused by charcoal rot was observed in either year. These results indicated that late season drought stress may be more important to charcoal rot development than drought stress throughout the season, but other factors are needed to trigger early plant death and subsequent yield losses observed in grower fields.

Model-Based Community Analyses Identify Fungal Endophytes that May Modulate Symptom Development of Charcoal Rot Disease in Soybean

Charcoal rot disease of soybean is a major threat to soybean harvests in the United States. This disease, caused by the fungal pathogen Macrophomina phaseolina (MP), cannot be economically treated in agronomic field conditions, and breeding of resistant cultivars has been largely unsuccessful due to multiple gene resistance. For difficult-to-treat phytopathogens, nascent research has emphasized the potential utility of endophyte modulation of disease symptoms. Most research into biocontrol of MP in soybeans has focused on in vitro or limited greenhouse/pot experiments, which may not emulate field conditions. Here, using a paired framework of diseased and asymptomatic soybeans exposed to MP in a production field setting, coupled with model-based community analyses, we identify several fungal endophytic taxa that apparently modulate disease pathogenicity. We use a multilevel analytical framework to provide evidence of taxa that respond to the disease state by querying plants across years and plant compartments. Additional work is needed to test the mechanisms by which these identified taxa may modulate MP, but this work provides the strongest evidence to date that endophytes may modulate charcoal rot disease levels in production field conditions. We posit that breeding for improved colonization of disease-modulating endophytes is a promising option to manage charcoal rot in soybean. [Formula: see text] Copyright © 2024 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license .

Amplicon sequencing identified a putative pathogen, Macrophomina phaseolina, causing wilt in African eggplant (Solanum aethiopicum) grown in Tanzania and Uganda

African eggplant (Solanum aethiopicum L.) is one of the most common traditional vegetables in Tanzania and Uganda, but its productivity is severely affected by wilt diseases caused by a number of pathogens. Plant stem and root samples were collected in several fields from many neighboring diseased and healthy plants of the Gilo group in Tanzania and from the Shum group in Uganda to identify putative pathogens causing wilt on African eggplants. Through amplicon sequencing of sampled diseased and healthy tissues, we identified putative causal pathogens for the wilt symptoms. Wilting of S. aethiopicum in Uganda is most likely caused by the bacterial pathogen Ralstonia solanacearum whereas, in Tanzania, wilt is most likely caused by the fungal pathogen Macrophomina phaseolina, infecting roots. Infection of stems by Fusarium solani may also contribute to the wilt symptoms in Tanzania. Further artificial inoculation under controlled conditions confirmed that M. phaseolina can cause typical wilting symptoms on S. aethiopcium genotypes. The discovery of different putative causal agents of wilt in the crop demonstrates the need for site specific etiological analysis of wilt before developing and implementing effective control methods. Further research is needed to confirm the results and develop appropriate management measures against specific wilt pathogens.

Pyramided transgenic jute (Corchorus capsularis) with biotic stress resistance and herbicide tolerance

Jute (Corchorus sp.) is a commercially important bast (stem) fibre–producing crop. The natural, long, lustrous, and strong jute fibres are globally popular for their domestic and industrial utility. Unfortunately, jute fibre production is under continuous threat from three major agricultural challenges: insect infestation (predominantly lepidopteran insects), fungal infection, and weed management issues. Creating jute plants that could themselves overcome these three challenges would be spectacular. Hence, multi–trait transgenic lines were developed by incorporating three genes—cry1Ab/Ac (encodes Bt δ–endotoxin for Lepidopteran insect resistance), chi11 (encodes chitinase for fungus resistance), and bar (encodes phosphinothricin acetyltransferase (PAT) for glufosinate herbicide tolerance)—into the white jute (C. capsularis) cultivar JRC–321 through Agrobacterium–mediated co–transformation. A bioassay–based event selection strategy was applied for the selection of the transformed jute lines. Each plant was tested through consecutive bioassays involving herbicide, insects, and fungus, followed by molecular and biochemical validation. The functions of the three genes, incorporated in the greenhouse–grown transgenic progeny plants, were confirmed for every generation (till the T2 generation). The plants were able to detoxify the glufosinate herbicide Basta®, resist the two devastating lepidopteran pests tested: hairy caterpillars (Spilarctia obliqua) and semiloopers (Anomis sabulifera), and recover from the stem rot–causing fungal pathogen Macrophomina phaseolina, without compromising agronomic characteristics or fibre quality. The white jute lines thus developed may be effectively used to increase the production of quality jute fibres, meet local and global demands, and minimise input cultivation costs.

Evaluating the Response of Glycine soja Accessions to Fungal Pathogen Macrophomina phaseolina during Seedling Growth.

Charcoal rot caused by the fungal pathogen Macrophomina phaseolina (Tassi) Goid is one of various devastating soybean (Glycine max (L.) Merr.) diseases, which can severely reduce crop yield. The investigation into the genetic potential for charcoal rot resistance of wild soybean (Glycine soja) accessions will enrich our understanding of the impact of soybean domestication on disease resistance; moreover, the identified charcoal rot-resistant lines can be used to improve soybean resistance to charcoal rot. The objective of this study was to evaluate the resistance of wild soybean accessions to M. phaseolina at the seedling stage and thereby select the disease-resistant lines. The results show that the fungal pathogen infection reduced the growth of the root and hypocotyl in most G. soja accessions. The accession PI 507794 displayed the highest level of resistance response to M. phaseolina infection among the tested wild soybean accessions, while PI 487431 and PI 483660B were susceptible to charcoal rot in terms of the reduction in root and hypocotyl growth. The mean values of the root and hypocotyl parameters in PI 507794 were significantly higher (p < 0.05) than those of PI 487431 and PI 483460B. A analysis of the resistance of wild soybean accessions to M. phaseolina using the root and hypocotyl as the assessment parameters at the early seedling stage provides an alternative way to rapidly identify potential resistant genotypes and facilitate breeding for soybean resistance to charcoal rot.

Genome-wide association study for charcoal rot resistance in soybean harvested in Kazakhstan.

Charcoal rot (CR) caused by the fungal pathogen Macrophomina phaseolina is a devastating disease affecting soybean (Glycine max (L.) Merrill.) worldwide. Identifying the genetic factors associated with resistance to charcoal rot is crucial for developing disease-resistant soybean cultivars. In this research, we conducted a genome-wide association study (GWAS) using different models and genotypic data to unravel the genetic determinants underlying soybean resistance to сharcoal rot. The study relied on a panel of 252 soybean accessions, comprising commercial cultivars and breeding lines, to capture genetic variations associated with resistance. The phenotypic evaluation was performed under natural conditions during the 2021-2022 period. Disease severity and survival rates were recorded to quantify the resistance levels in the accessions. Genotypic data consisted of two sets: the results of genotyping using the Illumina iSelect 6K SNP (single-nucleotide polymorphism) array and the results of whole-genome resequencing. The GWAS was conducted using four different models (MLM, MLMM, FarmCPU, and BLINK) based on the GAPIT platform. As a result, SNP markers of 11 quantitative trait loci associated with CR resistance were identified. Candidate genes within the identified genomic regions were explored for their functional annotations and potential roles in plant defense responses. The findings from this study may further contribute to the development of molecular breeding strategies for enhancing CR resistance in soybean cultivars. Marker-assisted selection can be efficiently employed to accelerate the breeding process, enabling the development of cultivars with improved resistance to сharcoal rot. Ultimately, deploying resistant cultivars may significantly reduce yield losses and enhance the sustainability of soybean production, benefiting farmers and ensuring a stable supply of this valuable crop.

Microbiome Network Connectivity and Composition Linked to Disease Resistance in Strawberry Plants

Plants recruit diverse microbial communities from the soil to their roots. Intermicrobial interactions and connectivity in the root microbiome play essential roles in plant health by promoting resistance to soilborne pathogens. However, the understanding of these interactions under field conditions is still scarce. Using a strawberry crop model, we characterized the prokaryotic and the fungal communities in the rhizosphere and the roots of three strawberry cultivars grown under field conditions and displaying varying degrees of resistance to the soilborne fungal pathogen Macrophomina phaseolina. We tested the hypothesis that resistant cultivars assemble distinct bacterial and fungal communities that foster microbial connectivity and mediate disease resistance. Our results show that the soilborne pathogen M. phaseolina does not alter the root microbiome of the three strawberry cultivars. Microbiome comparative analysis indicated that the highly susceptible cultivar Sweet Ann assembled a distinct rhizosphere and root microbiome, whereas the microbiome of the strawberry cultivars Marquis and Manresa were more similar and enriched with potential beneficial microbes. Cooccurrence network analysis revealed that the fungal pathogen M. phaseolina was more peripheral in the microbial network of Sweet Ann compared with Manresa and Marquis. Collectively, these results stress the role of the plant microbiome in mediating resistance against soilborne pathogens and further suggest the role of plant genetic traits in the assembly of beneficial microbiome members. Our study reinforces the eminent role of the plant microbiome as trait selection in breeding programs and the need for further understanding of the genetic and biological mechanisms that mediate microbiome assembly. Uncovering these mechanisms will be key for the future success of plant breeding programs in their fight against soilborne pathogens. [Formula: see text] Copyright © 2023 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license .

Synthesis and Antimicrobial Analysis of High Surface Area Strontium-Substituted Calcium Phosphate Nanostructures for Bone Regeneration.

Continuous microwave-assisted flow synthesis has been used as a simple, more efficient, and low-cost route to fabricate a range of nanosized (<100 nm) strontium-substituted calcium phosphates. In this study, fine nanopowder was synthesized via a continuous flow synthesis with microwave assistance from the solutions of calcium nitrate tetrahydrate (with strontium nitrate as Sr2+ ion source) and diammonium hydrogen phosphate at pH 10 with a time duration of 5 min. The morphological characterization of the obtained powder has been carried out by employing techniques such as transmission electron microscopy, X-ray diffraction, and Brunauer-Emmett-Teller surface area analysis. The chemical structural analysis to evaluate the surface properties was made by using X-ray photoelectron spectroscopy. Zeta potential analysis was performed to evaluate the colloidal stability of the particles. Antimicrobial studies were performed for all the compositions using four bacterial strains and an opportunistic human fungal pathogen Macrophomina phaseolina. It was found that the nanoproduct with high strontium content (15 wt% of strontium) showed pronounced antibacterial potential against M. luteus while it completely arrested the fungal growth after 48 h by all of its concentrations. Thus the synthesis strategy described herein facilitated the rapid production of nanosized Sr-substituted CaPs with excellent biological performance suitable for a bone replacement application.

MicroRNA397 regulates tolerance to drought and fungal infection by regulating lignin deposition in chickpea root.

Plants deposit lignin in the secondary cell wall as a common response to drought and pathogen attacks. Cell wall localised multicopper oxidase family enzymes LACCASES (LACs) catalyse the formation of monolignol radicals and facilitate lignin formation. We show an upregulation of the expression of several LAC genes and a downregulation of microRNA397 (CamiR397) in response to natural drought in chickpea roots. CamiR397 was found to target LAC4 and LAC17L out of twenty annotated LACs in chickpea. CamiR397 and its target genes are expressed in the root. Overexpression of CamiR397 reduced expression of LAC4 and LAC17L and lignin deposition in chickpea root xylem causing reduction in xylem wall thickness. Downregulation of CamiR397 activity by expressing a short tandem target mimic (STTM397) construct increased root lignin deposition in chickpea. CamiR397-overexpressing and STTM397 chickpea lines showed sensitivity and tolerance, respectively, towards natural drought. Infection with a fungal pathogen Macrophomina phaseolina, responsible for dry root rot (DRR) disease in chickpea, induced local lignin deposition and LAC gene expression. CamiR397-overexpressing and STTM397 chickpea lines showed more sensitivity and tolerance, respectively, to DRR. Our results demonstrated the regulatory role of CamiR397 in root lignification during drought and DRR in an agriculturally important crop chickpea.

Interactions Among Heterodera glycines, Macrophomina phaseolina, and Soybean Genotype.

Heterodera glycines, the soybean cyst nematode (SCN), and fungal pathogen Macrophomina phaseolina are economically important soybean pathogens that may coinfest fields. Resistance remains the most effective management tactic for SCN, and the rhg1-b resistance allele derived from plant introduction 88788 is most commonly deployed in the northern United States. The concomitant effects of SCN and M. phaseolina on soybean performance, as well as the effect of the rhg1-b allele in two different genetic backgrounds, were evaluated in three environments (during 2013 to 2015) and a greenhouse bioassay. Within two soybean populations, half of the lines had the rhg1-b allele, and the other half had the susceptible allele in the backgrounds of the cultivars IA3023 and LD00-3309. Significant interactions between soybean rhg1-b allele and M. phaseolina-infested plots were observed in 2014. In all experiments, initial SCN populations (Pi) and M. phaseolina in roots were associated with reduced soybean yield. SCN reproduction factor (RF = final population/Pi) was affected by SCN Pi, rhg1-b, and genetic background. A background-by-genotype interaction on yield was observed only in 2015, with a stronger rhg1-b effect in the LD00-3309 background, which suggested that the susceptible parent 'IA3023' is tolerant to SCN. SCN female index from greenhouse experiments was compared with field RF, and Lin's concordance and Pearson's correlation coefficients decreased with increasing field SCN Pi in soil. In this study, both SCN and M. phaseolina reduced soybean yield asymptomatically, and the impact of SCN rhg1-b resistance was dependent on SCN virulence but also population density.

Histopathological changes in root and stem of mungbean exposed to Macrophomina phaseolina and dry biomass of Chenopodium quinoa.

Mungbean production is affected by a fungal pathogen Macrophomina phaseolina. A pot experiment was carried out to check the effect of quinoa (Chenopodium quinoa Willd.) dry biomass on the histopathological features of mungbean exposed to M. phaseolina. For this, 1%, 2% and 3% (wt/wt) of C. quinoa dry biomass was mixed in the soil inoculated with M. phaseolina. The highest disease incidence (36%) was recorded in the positive control (only M. phaseolina). Different treatments of quinoa dry mass reduced disease incidence to 4-7%. After 4 weeks of germination, stem and root sections were stained in phloroglucinol-HCl, ferric chloride and Lugol's iodine stains for the detection of lignin, polyphenols and starch granules, respectively, and studied under light microscope. Plants of positive control showed damaged cells, and heavy deposition of lignin, phenolics and starch granules as compared to plants of the negative control and those grown in the soil amended with different doses of dry biomass of quinoa. For better understanding, plant root and stem sections were studied under a scanning electron microscope. Plant sections from positive control exhibited the presence of M. phaseolina sclerotial bodies and hyphal growth, whereas in negative control normal cell structures were observed. However, C. quinoa amended stem and root sections revealed the presence of high gel deposition with normal cell structures and no pathogen establishment. This study concludes that application of C. quinoa is an effective and natural remedy to activate the resistance mechanism in plants and to combat the adverse effects of M. phaseolina. HIGHLIGHTS: Macrophomina phaseolina causes charcoal rot in mungbean. Chenopodium quinoa amendment significantly reduced incidence of charcoal rot disease. M. phaeolina increased concentrations of polyphenols, lignin and starch granules in mungbean.

Diagnosis and Inhibition of the Virulence Factor Phaseolenone of the Pathogenic Fungus Macrophomina phaseolina Using Some Chemical and Biological Methods

Al-Jbory, A.A.A. and A.A Hasan. 2021. Diagnosis and Inhibition of the Virulence Factor Phaseolenone of the Pathogenic Fungus Macrophomina phaseolina Using Some Chemical and Biological Methods. Arab Journal of Plant Protection, 39(4): 252-256. https://doi.org/10.22268/AJPP-039.4.252256 Results obtained in this study confirmed the efficacy of some chemical and biological factors in reducing the concentration of Phaseolenone toxin produced by the fungal pathogen Macrophomina phaseolina grown on potato dextrose broth medium. The toxin concentrations were measured in different treatments using high performance liquid chromatography (HPLC). The citric acid treatment at 5% concentration surpassed the other treatments (lactic acid, acetic acid, SDS salts, EDTA, bacterial filtrates of Pseudomonas fluorescens and Bacillus subtilis). Citric acid treatment reduced by 5% the toxin concentration to 1.74 microgram/ml compared to 6.94 microgram/ml for the control treatment. This reduction in Phaseolenone concentration was also noticed through the reduction of the area under the curve which amounted to 1.684% for the citric acid treatment compared with 6.814% for the control treatment. Keywords: Phaseolenone, Macrophomina Phaseolina, charcoal rot, mycotoxin.

Complete Genome Sequence Resource for the Endophytic Burkholderia sp. Strain MS389 Isolated from a Healthy Soybean Growing Adjacent to Charcoal Rot Disease Patch.

Burkholderia sp. strain MS389, an endophytic bacterium, was isolated from a healthy soybean plant growing adjacent to a patch of plants affected by charcoal rot disease, caused by the fungal pathogen Macrophomina phaseolina. Preliminary studies demonstrated that strain MS389 possesses antimicrobial activities against multiple plant pathogens. Burkholderia sp. strain MS389 was found to have three circular chromosomes of 3,563,380 bp, 3,002,449 bp, and 1,180,421 bp in size, respectively. The 7,746,250-bp genome, with 66.73% G+C content, harbors 6,756 protein coding genes in the predicted 6,985 genes. In total, 18 rRNAs, 68 tRNAs, and four ncRNAs were identified and 139 pseudogenes were annotated as well. The findings of this study will provide valuable data to explore the antimicrobial mechanisms of the endophytic bacterial strain.

HYPERSPECTRAL SPECTROSCOPY TO DETECT DIFFERENT RESPONSES OF TWO SOYBEAN (GLYCINE MAX) CULTIVARS TO CHARCOAL ROT (MACROPHOMINA PHASEOLINA) TOXIN

Previous studies have confirmed the potential of hyperspectral spectroscopy (HS) to detect charcoal rot toxin effect on soybean (Glycine max). However, there is no evidence that it can differentiate among difference responses to that effect. This research tested the potential of HS (900–2400 nm) to differentiate different responses to charcoal rot effect caused by the fungal pathogen Macrophomina phaseolina. Known susceptible ‘Pharaoh’ and resistant ‘Spencer’ cultivars of soybean seedlings at the V1 stage were tested, and HS reflectance was measured in each treatment at 0 h (just before toxin treatment), 24 h, and 36 h after toxin treatment. For both cultivars, reflectance generally decreased up to 10% over time for controls and increased for treated seedlings up to 22%. Pharaoh had significant increases in reflectance 24 and 36 h after treatment, while Spencer did not exhibit significant changes in reflectance over the 24 and 36-h periods. The ratio of Al-Ahmadi et al. (2018) was also evaluated. Spencer showed a higher ratio than Pharaoh. Based on our results, HS can be used to compare the relative resistance of soybean cultivars to charcoal rot and is a potential screening technique to classify soybean cultivars based on their resistance to charcoal rot toxin.

Protection of Strawberry Plants against Charcoal Rot Disease (Macrophomina phaseolina) Induced by Azospirillum brasilense

Some Plant Growth-Promoting Rhizobacteria (PGPR) can induce protection against pathogens, increasing plant tolerance to various diseases. This so-called biocontrol activity is replacing harmful practices in agriculture caused by the use of agrochemicals. Azospirillum brasilense is one of the PGPR already effectively used as a resistance inducer in several crops. The aim of this study was to evaluate the protective effect of PGPR A. brasilense strains isolated from strawberry and petunia plants (REC3, 2A1, 2A2, and 2E1) against the fungal pathogen Macrophomina phaseolina, which is the causal agent of the strawberry charcoal rot disease. In vitro antagonism assays and enzymatic tests on Petri dishes revealed no direct inhibition on M. phaseolina growth by any of the A. brasilense strains. However, strawberry plants treated with REC3 and 2A1 strains increased callose and lignin deposition and stomatal closure compared to untreated plants. In addition, treatments with either bacterial strains induced a defense response in strawberry plants against virulent isolates of M. phaseolina evidenced by an increased tolerance to the charcoal rot disease. These results suggest that A. brasilense REC3 and 2A1 strains can be used for the activation of innate immunity in strawberry plants as a strategy for managing charcoal rot in a sustainable and environmentally friendly way.

Synthesis and crystal structure of phosphonic acid and bisphosphoramidate derivatives: QSAR studies of their anti-fungal potential on Macrophomina Phaseolina (Tassi) Goid

A series of phosphonic acid and bisphosphoramidate derivatives were synthesized and characterized. The bioactivities against the fungal pathogen Macrophomina phaseolina and human acetylcholinesterase AChE enzyme were studied using QSAR based on multiple linear regression. L17, with (p-Cl–C6H4–NH) (p-Cl–C6H4)C(H)P(O)(OC2H5)2 skeleton, demonstrated a great mortality on the M. phaseolina mycelial growth by 83% inhibition at 150 mg/L; the other tested derivative showed moderate to weak antifungal activity against the fungus. QSAR model based on the GA-MLR method revealed the importance of 3D descriptors (De, Mor18e, H8m, and Mor30p) on the antifungal activity. It showed good capability in predicting the fungicidal activity of the studied molecules. Another derivative, L5, with (m-CH3–NC5H4–NH)(m-CH3–C6H4)C(H)P(O)(OCH3)2 skeleton displays the most potent anti-AChE activity. The electronic parameters, ΔEL-H, and ELUMO, have the highest contribution of human AChE. The authors suggest that these models could be usefully employed in designing more effective crop protection compounds without side effects on non-target organisms.

Metabolites of Trichoderma longibrachiatum EF5 inhibits soil borne pathogen, Macrophomina phaseolina by triggering amino sugar metabolism

An endophytic fungal antagonist Trichoderma longibrachiatum EF5 exhibited biocontrol activity against a soil-borne fungal pathogen Macrophomina phaseolina. Under dual co-culture, T. longibrachiatum EF5 showed 58% inhibition against M. phaseolina. Crude soluble metabolites (SMs) extracted from EF5 exhibited biocontrol activity (61%), which is more significant than the cell-free extract. Dual culture of both T. longibrachiatum EF5 and M. phaseolina displayed entangled mycelial structures and retarded hyphal growth. The metabolites responsible for antibiosis and pathogenic activity profiled through GC-MS revealed a total of 131 SMs from axenic culture and upon the interaction of T. longibrachiatum EF5 and M. phaseolina. Interestingly, potential plant-growth-promoting and antimicrobial compounds such as 1- pentanol, 1-hexanol, myristonyl pantothenate, bisabolol, d-Alanine, and diethyl trisulphide were unique with T. longibrachiatum EF5. Few compounds that were not observed or produced minimally under axenic culture were increased during their interaction (e.g., 1,6-anhydro-á-d-Glucopyranose and 5-heptyl dihydro-2(3H)-Furanone), suggesting antimicrobial action against the pathogen. This study also unraveled the induction of amino sugar metabolism when T. longibrachiatum EF5 interacts with M. phaseolina, which is responsible for colonization and counterfeiting the pathogen. Hence T. longibrachiatum EF5 could be a potential biocontrol agent employed for defense priming and plant growth promotion.

Detection of charcoal rot (Macrophomina phaseolina) toxin effects in soybean (Glycine max) seedlings using hyperspectral spectroscopy

Charcoal rot caused by the fungal pathogen Macrophomina phaseolina is an important disease of soybean and the use of resistant cultivars is recommended to manage the disease. Since symptoms, including leaf wilt, typically occur as soybeans reach maturity, screening varieties for tolerance to charcoal rot can be time-consuming, requiring nearly an entire growing season. In this study, soybean seedlings (V1) were exposed to a culture filtrate of M. phaseolina containing toxin(s) produced by the fungal pathogen. The effect on the seedlings was measured with hyperspectral spectroscopy on leaves. Two spectrometers integrated with a fiber optic light source and a 6.35 mm diameter probe yielding 480–850 nm and 900–2400 nm ranges after preprocessing were used. The spectra of the untreated plants measured at 0 h, 4 h, 8 h, 12 h, and 24 h post-exposure to the fungal extract were nearly indistinguishable. In contrast, the toxin-treated plants had significantly different spectra from the untreated plants at each of the 4 h, 8 h, 12 h, and 24 h measurements. Reflectance increased in the NIR (900–2400 nm) region with extended exposure to the fungal extract. This change was most noticeable in the 1450 nm and 1940 nm wavebands. Across the spectra, the 24 h reflectance was significantly higher than that of 12 h, which was significantly higher than those of 8 h, 4 h, and 0 h. Jeffries-Matusita (JM) distance, quantifying class separability, was used as a feature selection method and the 24 h measurement had the highest JM distance values, which indicated good separability. Based on JM Distance the most sensitive wavebands were in the regions of 1370–2400 nm. A ratio of the reflectance at 0 h to reflectance at the other times for each of the wavebands was calculated. The ratio curves had two noticeable troughs centered on 1450 nm and 1940 nm, with respective ratios of 0.47 and 0.32 for the 24 h measurement. The 1940 nm ratio at 24 h was proposed as a relative measure of charcoal rot susceptibility of soybean varieties. A ratio of 1.0 indicated no susceptibility with lower ratios indicating greater susceptibility to charcoal rot toxin(s). This study has implications in terms of developing tools to screen for soybean varieties tolerant to charcoal rot and potentially for other biotic or abiotic factors that induce foliar wilting.

Resistance to Charcoal Rot Identified in Ancestral Soybean Germplasm

ABSTRACTCharcoal rot, caused by the fungal pathogen Macrophomina phaseolina, is an economically important disease on soybean and other crops including maize (Zea mays L.), sorghum [Sorghum bicolor (L.) Moench], and sunflower (Helianthus annuus L.). Without effective cultural or chemical options to control charcoal rot in soybean [Glycine max (L.) Merr.], finding sources of genetic resistance is of high interest. In this study, 70 ancestral soybean genotypes were screened for resistance to M. phaseolina using a cut‐stem inoculation technique under semi‐controlled greenhouse conditions. Lesion progression on the stems in the first experiment was measured 7 to 15 d after inoculation. Three follow‐up experiments were conducted to select and confirm the genotypes with the strongest partial resistance. Two experiments evaluated lesion lengths and the third experiment evaluated seedling survival. In the two experiments measuring lesion lengths, PI 548302 (42 and 38 mm) and PI 548414 (36 and 52 mm) had significantly shorter lesion lengths than the moderately resistant genotype, DT97‐4290 (58 and 87 mm). In the fourth experiment, percentage survival of PI 548414 (88%), PI 548302 (81%), and PI 548178 (66%) were significantly higher than survival of DT97‐4290 (32%). These three genotypes may be useful as parents for developing soybean cultivars with charcoal rot resistance.

Genetic Mechanisms of Host–Pathogen Interactions for Charcoal Rot in Soybean

Soybean is a leading agronomic crop and contributes to food and agricultural security with expanding production areas in diverse regions around the world. Although soybean is challenged by several diseases and pests and progress has been made in understanding and managing some of these pathogens and pests, charcoal rot, incited by the soil-borne fungal pathogen Macrophomina phaseolina, has received little attention. M. phaseolina has a broad host range and is capable of attacking and infecting several groups of plant species, including soybean. Charcoal rot symptoms on soybean appear more commonly during hot and dry weather conditions, and are associated with drought stress. In recent years, it has become more important to develop management strategies to control charcoal rot in soybean fields. Understanding the genetics of this pathogen as well as its interactions with plant hosts will help in developing effective control and management strategies. The biology of M. phaseolina, its genetics, and plant–fungal relationships are reviewed herein. In addition, a discussion of potential opportunities utilizing modern tools to enhance genetic resistance against charcoal rot is also presented.