Fungal Community Richness Research Articles

Ectomycorrhizal fungal community response to warming and rainfall reduction differs between co-occurring temperate-boreal ecotonal Pinus saplings.

Understanding the responses of ectomycorrhizal (ECM) fungi and their tree hosts to warming and reduced soil water availability under realistic future climate scenarios is essential, yet few studies have investigated how combined global change stressors impact ECM fungal community richness and composition as well as host performance. In this study, we leveraged a long-term factorial warming (ambient, + 1.7 ºC, + 3.2 ºC) and rainfall reduction (ambient, 30% reduced rainfall) experiment in northern Minnesota, USA to investigate the responses of two congeneric hosts with varying drought tolerances and their associated ECM fungal communities to a gradient of soil moisture induced by a combination of warming and rainfall reduction. Soil drying had host-specific effects; the less drought tolerant Pinus strobus had decreased stem growth and lower ECM fungal community richness (fewer ECM fungal Operational Taxonomic Units, OTUs), while the more drought tolerant Pinus banksiana experienced no decline in stem growth but had an altered ECM fungal community composition under drier, warmer soils. Taken together, the results of this study suggest that the combined effects of warming and decreased precipitation will largely be additive in terms of their impact on host performance and ECM fungal community richness, but that drier and warmer soil conditions may also differentially impact specific ECM fungal genera independently of host performance.

Diversity and Functional Characteristics of Fungal Communities and Influencing Factors in Typical Paddy Fields of China

To investigate the structure, diversity, and function of different paddy soil fungal communities and the factors affecting them in typical paddy cropping areas in China, five typical Chinese paddy soils were selected in this study, and the composition and diversity of soil fungal communities were comparatively analyzed using high-throughput sequencing technology and functionally predicted using the FUNGuild microecological tool. The results showed that： ① The fungal community diversity of soil samples from Heilongjiang （HLJ） was significantly lower than that of the other four regions （P<0.05）； the highest fungal community richness was found in paddy soils from Yunnan （YN）, which was significantly higher than that of the other regions （P<0.05）； and the soil samples from Hainan （HN）, Jiangxi （JX）, and Shandong （SD） were relatively close to each other. The highest average relative abundance at the level of the five typical paddy phyla was Ascomycota, and the genus with the highest average relative abundance was Tausonia. ② Fungi had the largest proportion of saprophytic trophic types, and their corresponding environmental functions were stronger. ③ The species abundance of soil fungi was highly significantly correlated with soil TP, EC, and BD （P<0.01）, and redundancy analyses also showed that soil TP was the main driver of the fungal community as well as the saprophytic functional taxa. The above results showed that the soil fungal community diversity and structure varied greatly among samples, and the relative abundance of fungal genera was affected by soil physical and chemical properties and altered the fungal community structure in paddy fields. The development of this study will provide theoretical references for the sustainable management based on fungal diversity and function of paddy fields.

Processes of assembly of endophytic prokaryotic and rhizosphere fungal communities in table grape are preponderantly deterministic

Understanding the assemblage of microbial communities is important for the health maintenance and post-harvest quality of fruit crops. However, systematic studies on the core microbiomes of table grapes and microbial community assembly of soil-plant continuum are still rare. To address this, samples were collected and analyzed from key microbiome compartments (bulk soil, rhizosphere of new roots and old roots, endosphere of new and old roots, and endosphere of leaves and fruits) of five table grape cultivars (Balado Black, Jingya, Fujimino, Victoria and Kyoho) at the swelling stage and harvest stage in the field plots. Prokaryotic and fungal communities were analyzed using 16S rRNA and ITS rRNA high-throughput sequencing, respectively. The compartment was the major factor attributable to the variations in both prokaryotic (52.5 %) and fungal communities (23.2 %), respectively. The richness and phylogenetic diversity of both prokaryotic and fungal communities decreased significantly along the compartment continuum from soil to fruit endosphere, but did not differ between the five cultivars across all samples. Occupancy-abundance distribution was used to define 97 core bacteria, 29 core fungi for rhizosphere soil and five core bacteria, 172 core fungi for endosphere. Functional annotations of the rhizosphere core bacteria were mostly associated with ureolysis and chemoheterotrophy, while endophytic core bacteria were mostly fermentative and symbiotic. Rhizosphere core fungi were saprophytic and the endophytic fungi were putatively pathogens. From rhizosphere soil to aboveground organs, the relative importance of deterministic processes for prokaryotic community assembly gradually increased but the contribution of stochastic processes increased for fungal community assembly. These findings highlight niche-specific microbial communities and shared core microbiomes in different grapevine cultivars. The deterministic processes contribute more to the assembly of prokaryotic communities in the aboveground than in the belowground while the assembly of fungal communities exhibits opposite trends. Management practices aiming at niche-specific microbiome should be developed for sustainable grape production.

Diversified crop rotations improve soil microbial communities and functions in a six-year field experiment

Diversified crop rotations can help mitigate the negative impacts of increased agricultural intensity on the sustainability of agroecosystems. However, the impact of crop rotation diversity on the complexity of soil microbial association networks and ecological functions is still not well understood. In this study, a 6-year field experiment was conducted to evaluate how six different crop rotations change the composition and network complexity of soil microbial communities, as well as their related ecological functions. Microbial traits were measured in six crop rotations with different crop diversity index (CDI) during 2016–2022, including winter wheat–summer maize (CDI 1, WM) as the control, sweet potato→winter wheat–summer maize (CDI 1.5, SpWM), peanut→winter wheat–summer maize (CDI 1.5, PWM), soybean→winter wheat–summer maize (CDI 1.5, SWM), spring maize→winter wheat–summer maize (CDI 1.5, SmWM), and ryegrass–sweet sorghum→winter wheat–summer maize (CDI 2, RSWM). The study findings indicated that diversified crop rotations significantly increased ASV richness of both bacterial and fungal communities after 6-year treatments, and the β-diversity profiles of bacterial and fungal communities significantly distinguished at the year of 2022 from 2016. The relative abundance of Acidobacteria and Chloroflexi was significantly enriched in SpWM rotation at 2022, while Basidiomycota significantly declined in five diversified rotations compared to WM. Diversified crop rotations at 2022 increased the complexity and density of bacterial and fungal networks than 2016. SpWM and PWM rotations had the highest functional groups involved in chemoheterotrophy and saprotroph, respectively. Structural equation modelling (SEM) also revealed that diversified crop rotations increased soil nutrients through improving the composition of bacterial communities and the augmented intricacy of the interconnections within both bacterial and fungal communities. This research underscores the importance of preserving the diversity and ecological functions of soil microorganisms in the nutrient-recycling processes for efficient agricultural practices.

Conservation Agricultural Practices Increase Soil Fungal Diversity and Network Complexity in a 13-Year-Duration Conservation Agriculture System in the Loess Plateau of China

Agricultural practices can affect the diversity and community structure of soil fungi. This study investigates the impact of long-term agricultural practices on soil fungal diversity in the Loess Plateau of northwestern China. Different tillage practices have been implemented for 13 years, and their impact on soil fungi is assessed using high-throughput Illumina Sequencing. This study found a total of 2071 fungal Amplicon Sequence Variants (ASVs), and these were assigned to 25 different phyla, 372 families, and 496 genera. The fungal communities were dominated by Ascomycota (52.1%), followed by Zygomycota (14.3%) and Basidiomycota (9.0%). In general, the soil exhibited higher fungal community abundance, richness, and diversity in winter than in summer. Notably, no-tillage or stubble retention resulted in greater diversity than conventional tillage, with no-tillage combined with stubble retention resulting in the highest fungal richness, diversity, and network complexity in both summer and winter. These findings indicate that no-tillage with stubble retention is beneficial for biological soil components, which favors the establishment of abundant and diverse soil fungal communities in the Loess Plateau of China. The present study expands the knowledge of fungal communities in agro-ecosystems and the long-term ecosystem benefits of tillage practices.

Soil pathogenic fungal groups and soil nutrient cycling under land use practices in Liupanshan Mountain in China

AbstractDifferent land‐use practices in temperate forests strongly affect soil quality and soil microbial communities, whereas the assembly and interactions of soil functional fungal communities provide positive feedback. Therefore, the effects of forest ecosystem degradation on the composition of functional soil fungal community and soil nutrient cycling are of particular importance. We studied forest ecosystems in the Liupanshan Mountains in the northwestern part of the Loess Plateau and analyzed the relationship of soil fungal community and soil nutrient cycling under different land use practices (natural forest [NF], plantation forest, and farmland [FL]). The results showed that soil pH and electrical conductivity were the highest in FL, whereas the soil carbon cycle index and nitrogen cycle index decreased. The soil total phosphorus content did not change significantly with an increase in available phosphorus content. The change from NF to FL significantly increased the number of operational taxonomic units, diversity, and richness of soil fungal communities. The composition of the soil fungal communities was also strongly influenced by carbon and nitrogen cycle indices. In addition, FL reclamation increased the complexity of the soil microorganism co‐occurrence network, and the interrelationships between soil functional fungal community were enhanced. Pathogenic fungal communities were enriched in FLs, and their relative abundance was significantly regulated by environmental factors such as pH and the ratio of nitrogen to phosphorus. The soil pathogenic fungal community affected carbon and nitrogen cycle indices to varying degrees.

Litter application increases soil multinutrient cycling in alpine meadow ecosystems on the Tibetan Plateau

In soil, multiple nutrients are cycled simultaneously (multinutrient cycling), rather than a single measurable process. While the impact of litter decomposition on individual soil nutrient cycling in alpine meadow ecosystems on the Tibetan Plateau is well-documented, its effects on soil multinutrient cycling remain unclear. We deployed a three-year litter application experiment in an alpine meadow on the Tibetan Plateau to examine the responses of soil microclimate, extracellular enzyme activities, and bacterial and fungal communities to litter applications, as well as the correlations between these vital factors with soil multinutrient cycling induced by litter application. We showed that litter application raised the soil multinutrient cycling index, temperature, and moisture content by an average of 190 %, 1.2 °C, and 12 %, respectively. Litter application increased the activities of soil extracellular enzyme β-1,4-glucosidase, β-1,4-xylosidase, β-D-cellobiosidase, L-leucine aminopeptidase, acid phosphatase, and phenol oxidase. Moreover, litter application increased the richness and diversity of both soil bacterial and fungal communities, and altered their community structure, but with larger effects on bacterial communities (R2 = 0.43 for bacterial community and R2 = 0.19 for fungal community). This indicates that bacterial communities are more responsive to litter application than fungal communities in alpine meadow soils on the Tibetan plateau. Partial least-square path modeling indicated that soil bacterial and fungal communities and extracellular enzyme activities were significantly positively correlated with soil multinutrient cycling after litter application. The relative abundances of bacterial phyla of Proteobacteria, Actinobacteria, and Verrucomicrobiota, and fungal phyla of Basidiomycota were positively related to most of the critical soil nutrients, indicating that those microbial taxa are the main drivers of soil multinutrient cycling. Overall, this study provides explicit evidence that litter application accelerates Tibetan meadow soil multinutrient cycling, which contributes to an enhanced understanding of the role of litter in sustaining the functions and services of alpine meadow ecosystems on the Tibetan Plateau.

Analysis of the Fungal Community Composition in Endemic Orchids with Terrestrial Habitat in Subtropical Regions.

Habenaria and Liparis are well-known orchid genera that grow in terrestrial habitats in the tropics, subtropics or temperate zones. Three species have been found in subtropical regions of China, inhabiting terrestrial to epiphytic habitats. This study focuses on three species, H. dentata (distributed in Asia), H. yachangensis, and L. gigantea. For H. yachangensis and L. gigantea, there is no information about the mycorrhizal community in these species. This study aims to conduct the fungal community screening of Chinese ground orchids from subtropical regions. We performed a comparative analysis of the fungal community among H. dentata, H. yachangensis, and L. gigantea, determining their ITS regions using NGS paired-end sequences. The results clarified the diversity and the predominance of fungal genera. Ascomycota was abundant compared to Basidiomycota or other fungi groups in all communities, with a high dominance in all populations, especially for L. gigantea. At different root spatial locations, the fungal community diversity and richness were higher in the soil than in the rhizosphere or inner root. However, the results suggest that L. gigantea has a different fungal community compared to Habenaria species. In this order, the subtropical terrestrial orchids have a different fungal network compared to the northern terrestrial orchids. Also, there is a high probability of co-existence and co-evolution of endophytic fungi in these terrestrial orchids, indicating the potential role of host plants in selecting an endophytic fungal community. Furthermore, our results highlight the need to elucidate the microbe interactions of these unique orchids for long-term purposes, such as isolating indigenous fungi for suitable inoculants for further orchid propagation, restoration, and conservation.

Structure and Function of Fungal Community in Channel Sediments of Different Sections of Jialing River

This study aimed to explore the effects of different disturbances on the fungal communities in the sediments of the Jialing River in order to provide scientific basis for the protection of the river ecosystem. The fungal community in the sediments of the main stream of the Jialing River was taken as the research object, and high-throughput sequencing and bioinformatics techniques were used to analyze the differences in the composition and function of fungal communities in river sediment of different types of disturbance （project disturbance, tributary disturbance, sand mining disturbance, and reclamation disturbance） and non-disturbance sections. The results showed that： ① The reclamation and project disturbances significantly inhibited the diversity and richness of fungal communities （P<0.05）. The tributary disturbance increased the richness of fungal communities, whereas the impact of sand mining disturbance on sediment fungal communities was not significant. ② The diversity and composition of fungal communities tended to be similar at the different sampling sites in the section with low input of exogenous substances （non-disturbance and sand mining disturbance）, whereas there were obvious differences in the diversity of fungal communities at the different sampling sites of high input of external substances （tributary disturbance, project disturbance, and reclamation disturbance） sections. ③ Ascomycota, Rozellomycota, and Basidiomycota were the main dominant fungal phyla in the sediments of the Jialing River. The relative abundance of Rozellomycota was the highest in the sand mining interference section, and the relative abundance of Basidiomycota was the highest in the tributary interference section. Project disturbance significantly increased the relative abundance of saprotrophs, animal pathogens, plant pathogens, and dung saprotrophs, whereas other disturbances inhibited the relative abundance of fungal parasitic fungi, plant pathogens, and plant saprophytes. In conclusion, human disturbance has caused changes in fungal diversity, community structure, and function in the sediment of the Jialing River, and xenobiotic input was a key factor contributing to this phenomenon. The results can provide a reference for predicting and evaluating the ecological quality of river sediments.

Response of Soil Fungal Community in Coastal Saline Soil to Short-Term Water Management Combined with Bio-Organic Fertilizer

This study aimed to elucidate the response of soil microbial communities to saline soil amelioration via biological organic fertilizer. A year-long experiment was conducted on coastal saline soil, employing water and fertilizer strategies. Three treatments were compared: dry field (control, CK), paddy field (W), and combined dry and irrigated fields with biological organic fertilizer (BW). Soil DNA was extracted and sequenced using high-throughput methods, revealing significant reductions in soil electrical conductivity (EC) and pH with W and BW treatments. Moreover, the BW treatment notably increased soil organic carbon content by 17.2%, as well as soil urease and alkaline phosphatase activity. Fungal community richness increased, with the BW treatment showing a 36% rise in the ACE index and a 24% increase in the Shannon index, while the Simpson index decreased by 59%. Dominant fungal phyla were Ascomycota, Mortierellomycota, and Basidiomycota, with Basidiomycota prevailing at the genus level. Redundancy analysis (RDA) indicated that soil pH, EC, and organic carbon were key determinants of fungal community distribution, with the BW treatment correlating negatively with pH and salt and positively with soil organic carbon (SOC). Fungal functional groups varied among treatments, with saprophytic fungi predominating, but the BW treatment showed a higher relative abundance of animal pathogenic fungi. In summary, the integration of biological organic fertilizer with flooding ameliorates soil properties and influences the changes in soil fungal community structure and function in the short term. These results could enhance the scientific basis for the efficient utilization and development of saline soil resources in coastal areas.

Nitrogen fertilizer regulates purple rice seed endophytes and grain amino acid accumulation

AbstractThe effects of different nitrogen (N) application levels on seed endophytes and grain nutritional quality are not yet clear. The impact of four N application levels on endophytes and amino acid accumulation in purple rice seeds was examined using 16S rRNA and ITS amplicon sequencing technology. This study integrates 16S rRNA, ITS amplicon sequencing technology and amino acid‐targeted detection to explore the effects of four different nitrogen application levels (0 kg hm−2, Y1N0; 180 kg hm−2, Y1N1; 270 kg hm−2, Y1N2; 360 kg hm−2, Y1N3) on the accumulation of endophytic bacteria, fungi and amino acid content in purple rice seeds and their interaction mechanisms. The findings indicated an increase in the contents of most amino acids with increasing N application. The dominant bacterial species in the community were mainly from the phyla Proteobacteria and Actinobacteriota, while the dominant fungal species were from the phyla Ascomycota and Basidiomycota. There was a significant difference in the richness of endophytic fungal communities between Y1N0 and Y1N2. Y1N1 showed significant differences in Mucoromycota compared to Y1N3. The quantity of operational taxonomic units (OTUs) in the bacterial and fungal community co‐occurrence network increased with increasing N fertilizer, showing strong correlations with Sporidiobolus, Chaetomium, Humicola, Botryotrichum, Ophiosphaeria and Dioszegia for most amino acids. These findings indicate that a high amount of N fertilizer greatly increases amino acid contents in purple rice seeds and improves the diversity and stability of endophytic fungal populations.

Rotation with other crops slow down the fungal process in tobacco-growing soil

Continuous cultivation of tobacco could cause serious soil health problems, which could cause bacterial soil to change to fungal soil. In order to study the diversity and richness of fungal community in tobacco-growing soil under different crop rotation, three treatments were set up in this study: CK (tobacco continuous cropping); B (barley-tobacco rotation cropping) and R (oilseed rape-tobacco rotation cropping). The results of this study showed that rotation with other crops significantly decreased the soil fungal OTUs, and also decreased the community richness, evenness, diversity and coverage of fungal communities. Among them, B decreased the most. In the analysis of the composition and structure of the fungal community, it was found that the proportion of plant pathogens Nectriaceae decreased from 19.67% in CK to 5.63% in B, which greatly reduced the possibility of soil-borne diseases. In the analysis of the correlation between soil environmental factors and fungal communities, it was found that Filobasidiaceae had a strong correlation with TP and AP, and Erysiphaceae had a strong correlation with TK and AK. NO3−-N and NH4+-N were the two environmental factors with the strongest correlation with fungal communities. The results of this study showed that rotation with other crops slowed down the process of soil fungi in tobacco-growing soil and changed the dominant species of soil fungi community. At the same time, crop rotation changed the diversity and richness of soil fungal community by changing the physical and chemical properties of soil.

Responses of soil and rhizosphere microbial communities to Cd-hyperaccumulating willows and Cd contamination

BackgroundThe pollution of soil by heavy metals, particularly Cd, is constitutes a critical international environmental concern. Willow species are renowned for their efficacy in the phytoremediation of heavy metals owing to their high Cd absorption rate and rapid growth. However, the mechanisms underlying microbial regulation for high- and low-accumulating willow species remain poorly understood. Therefore, we investigated the responses of soil and rhizosphere microbial communities to high- and low-Cd-accumulating willows and Cd contamination. We analyzed soil properties were analyzed in bulk soil (SM) and rhizosphere soil (RM) planted with high-accumulating (H) and low-accumulating (L) willow species.ResultsRhizosphere soil for different willow species had more NH4+ than that of bulk soil, and RM-H soil had more than RM-L had. The available phosphorus content was greater in hyper-accumulated species than it was in lower-accumulated species, especially in RM-H. Genome sequencing of bacterial and fungal communities showed that RM-L exhibited the highest bacterial diversity, whereas RM-H displayed the greatest richness than the other groups. SM-L exhibited the highest diversity and richness of fungal communities. Ralstonia emerged as the predominant bacterium in RM-H, whereas Basidiomycota and Cercozoa were the most enriched fungi in SM-H. Annotation of the N and C metabolism pathways revealed differential patterns: expression levels of NRT2, NarB, nirA, nirD, nrfA, and nosZ were highest in RM-H, demonstrating the effects of NO3-and N on the high accumulation of Cd in RM-H. The annotated genes associated with C metabolism indicated a preference for the tricarboxylic pathway in RM-H, whereas the hydroxypropionate-hydroxybutyrate cycle was implicated in C sequestration in SM-L.ConclusionsThese contribute to elucidation of the mechanism underlying high Cd accumulation in willows, particularly in respect of the roles of microbes and N and C utilization. This will provide valuable insights for repairing polluted soil using N and employing organic acids to improve heavy metal remediation efficiency.

Temporal Dynamics of Fungal Communities in Alkali-Treated Round Bamboo Deterioration under Natural Weathering.

Microbes naturally inhabit bamboo-based materials in outdoor environments, sequentially contributing to their deterioration. Fungi play a significant role in deterioration, especially in environments with abundant water and favorable temperatures. Alkali treatment is often employed in the pretreatment of round bamboo to change its natural elastic and aesthetic behaviors. However, little research has investigated the structure and dynamics of fungal communities on alkali-treated round bamboo during natural deterioration. In this work, high-throughput sequencing and multiple characterization methods were used to disclose the fungal community succession and characteristic alterations of alkali-treated round bamboo in both roofed and unroofed habitats throughout a 13-week deterioration period. In total, 192 fungal amplicon sequence variants (ASVs) from six phyla were identified. The fungal community richness of roofed bamboo samples declined, whereas that of unroofed bamboo samples increased during deterioration. The phyla Ascomycota and Basidiomycota exhibited dominance during the entire deterioration process in two distinct environments, and the relative abundance of them combined was more than 99%. A distinct shift in fungal communities from Basidiomycota dominant in the early stage to Ascomycota dominant in the late stage was observed, which may be attributed to the increase of moisture and temperature during succession and the effect of alkali treatment. Among all environmental factors, temperature contributed most to the variation in the fungal community. The surface of round bamboo underwent continuous destruction from fungi and environmental factors. The total amount of cell wall components in bamboo epidermis in both roofed and unroofed conditions presented a descending trend. The content of hemicellulose declined sharply by 8.3% and 11.1% under roofed and unroofed environments after 9 weeks of deterioration. In addition, the contact angle was reduced throughout the deterioration process in both roofed and unroofed samples, which might be attributed to wax layer removal and lignin degradation. This study provides theoretical support for the protection of round bamboo under natural weathering.

Nitrogen addition changed soil fungal community structure and increased the biomass of functional fungi in Korean pine plantations in temperate northeast China

Nitrogen (N) deposition is a global environmental issue that can have significant impacts on the community structure and function in ecosystems. Fungi play a key role in soil biogeochemical cycles and their community structures are tightly linked to the health and productivity of forest ecosystems. Based on high-throughput sequencing and ergosterol extraction, we examined the changes in community structure, composition, and biomass of soil ectomycorrhizal (ECM) and saprophytic (SAP) fungi in 0–10 cm soil layer after 8 years of continuous N addition and their driving factors in a temperate Korean pine plantation in northeast China. Our results showed that N addition increased fungal community richness, with the highest richness and Chao1 index under the low N treatment (LN: 20 kg N ha−1 yr−1). Based on the FUN Guild database, we found that the relative abundance of ECM and SAP fungi increased first and then decreased with increasing N deposition concentration. The molecular ecological network analysis showed that the interaction between ECM and SAP fungi was enhanced by N addition, and the interaction was mainly positive in the ECM fungal network. N addition increased fungal biomass, and the total fungal biomass (TFB) was the highest under the MN treatment (6.05 ± 0.3 mg g−1).Overall, we concluded that N addition changed soil biochemical parameters, increased fungal activity, and enhanced functional fungal interactions in the Korean pine plantation over an 8-year simulated N addition. We need to consider the effects of complex soil conditions on soil fungi and emphasize the importance of regulating soil fungal community structure and biomass for managing forest ecosystems. These findings could deepen our understanding of the effects of increased N deposition on soil fungi in temperate forests in northern China, which can provide the theoretical basis for reducing the effects of increased N deposition on forest soil.

An Earthworm Peptide Alters Soil Nematode, Microbial, and Nutrient Dynamics: A Novel Mechanism of Soil Food Web Feedbacks

Earthworms are soil macrofauna that control soil ecosystems by strongly influencing soil nematodes, microorganisms, and nutrient cycling, as well as soil environmental factors. We have discovered an earthworm cyclic peptide that disrupts nematode DNA, affecting its lifespan, reproduction, and feeding preferences. To investigate the effects of this peptide on soil, it was added to soil, and changes in soil nematode, bacterial and fungal communities, soil nutrient contents, and basal respiration were measured on days 5 and 21. The results showed that the peptide reduced soil basal respiration on day 5 and soil NO3-N on day 21, decreased soil fungivores nematodes on day 5 and soil nematode abundance on day 21, and increased soil fungal community richness and diversity. It also altered the soil bacterial community structure between day 5 and the soil fungal community structure on days 5 and 21. The peptide regulates the soil environment by influencing the structure of soil bacterial and fungal communities through the soil nematode community, as demonstrated by partial least squares path modelling (PLS-PM) analyses. Earthworm cyclic peptides mediates tri-trophic interactions between earthworms, nematodes, microbes, and environmental factors, providing new insights into soil biota interactions and feedback in dynamic soil food webs.

Dynamics of the soil microbial community associated with Morchella cultivation: diversity, assembly mechanism and yield prediction.

The artificial cultivation of morels has been a global research focus owing to production variability. Understanding the microbial ecology in cultivated soil is essential to increase morel yield and alleviate pathogen harm. A total of nine Morchella cultivation experiments in four soil field types, forest, paddy, greenhouse, and orchard in Shanghai city were performed to determine the potential ecological relationship between Morchella growth and soil microbial ecology. Generally, significant variation was observed in the soil microbial diversity and composition between the different experimental field types. The niche width analysis indicated that the bacterial habitat niche breadth was significantly greater than the fungal community width, which was further confirmed by a null model that revealed that homogeneous selection could explain 46.26 and 53.64% of the variance in the bacterial and fungal assemblies, respectively. Moreover, the neutral community model revealed that stochastic processes dominate the bacterial community in forests and paddies and both the bacterial and fungal communities in orchard crops, whereas deterministic processes mostly govern the fungal community in forests and paddies and both the bacterial and the fungal communities in greenhouses. Furthermore, co-occurrence patterns were constructed, and the results demonstrated that the dynamics of the soil microbial community are related to fluctuations in soil physicochemical characteristics, especially soil potassium. Importantly, structural equation modeling further demonstrated that the experimental soil type significantly affects the potassium content of the soil, which can directly or indirectly promote Morchella yield by inhibiting soil fungal richness. This was the first study to predict morel yield through soil potassium fertilizer and soil fungal community richness, which provides new insights into deciphering the importance of microbial ecology in morel agroecosystems.

Soil multifunctionality predicted by bacterial network complexity explains differences in wheat productivity induced by fertilization management

Fertilization will cause changes in crop growth, soil microbial community and multiple ecosystem functions, but it is unclear whether and how the optimal productivity obtained by manure application and optimizing nitrogen is driven by microbial community and ecosystem multifunctionality. We explore this mechanism based on a field fertilization experiment using a split-plot design that began in 2014 with five N rates (N0, N75, N150, N225, N300) as main plots and two manure rates (M0, NPK group; M1, MNPK group) as subplots, respectively. In general, (1) grain yield was parabolically related to the N application rate. The N rates that obtained the highest yield were 150 kg ha−1 and 225 kg ha−1 for the MNPK and NPK groups, respectively. The average yield of the MNPK group was 10.5% higher than that of the NPK group. (2) Long-term fertilization management resulted in regular changes in soil multifunctionality (SMF) and the properties of various microbial communities. The richness, network complexity and soil multifunctionality of bacterial and fungal communities also increased initially and then decreased as the N rate. On average, the response ratio of soil multifunctionality to N75, N150, N225, N300 (control is N0) and M1 (control is M0) were 0.11, 0.41, 0.53, 0.44 and 1.19, respectively. The soil multifunctionality of MNPK was 260%, 722% and 101% higher than that of NPK at the tillering, jointing and harvest stages, respectively. (3) Soil multifunctionality not only always had a significant positive effect on aboveground biomass at all growth stages, but also had significant positive correlations with bacterial richness and network complexity. Based on the existing framework, we further demonstrated that high microbial richness supports multifunctionality by ensuring strong associative complexity among microorganisms. However, only bacterial network complexity always positively drove soil multifunctionality and indirectly influenced wheat growth at all growth stages in SEMs where multiple drivers were considered simultaneously (i.e., pH, SOC and biological factors). Random forest regression analysis showed that rare bacterial taxa had stronger predictive effects on soil multifunctionality than abundant taxa. Our results validate that M1N150 can ensure high yield in the study area while maintaining a high level of ecosystem function in the soil, which also contributes to the reduction of adverse environmental risks caused by fertilizer application. Importantly, the potential of microbial network complexity, especially bacterial network complexity, to influence crop growth by driving farmland ecosystem functions deserves to be explored under different crop types, cropping systems, and irrigation conditions, compared to previous microbial richness that has been simply quantified.

Long–term (25 years) continuous cotton cropping combined with residue incorporation affects the fungal communities in reclaimed saline soil

Soil fungi are essential in the degradation of crop residues in natural systems. However, how long–term continuous cropping combined with residue incorporation (CCRI) affects the fungal communities in reclaimed saline soils is still unclear. In this study, CCRI was implemented in a reclaimed salinized farmland for 0 (control group), 5, 10, 15, 20, and 25 years to explore the effects on soil properties and fungal communities. The results showed that CCRI reduced soil pH, electrical conductivity (EC), and available potassium (AK) by 2.6–8.3%, 24.0–71.4%, and 9.1–59.4%, respectively, and increased soil organ carbon (SOC), total nitrogen (TN), available phosphorus (AP), and microbial biomass carbon (MBC) by 36.0–117.2%, 84.2–173.4%, 18.5–344.8%, and 16.0–206.8%, respectively, compared with the control group (0–yr treatment). CCRI increased soil fungal species richness, but this effect decreased after 15–yr CCRI treatment; Ascomycota had the highest relative abundance (75.8–90.9%) in the CCRI soils. CCRI treatments significantly reduced the relative abundance of symbiotroph, saprotroph, and pathotroph; Especially, the relative abundance of plant pathogen fungi was significantly reduced by (25.5–36.7%), and that of arbuscular mycorrhizal fungi (AMF) was significantly increased (0.01–0.07%), compared with the control group. Besides, the main soil properties affecting soil fungal community were pH and AK. Overall, the 10 – 15 years CCRI treatment was most beneficial for soil nutrient accumulation and maintaining the richness and diversity of fungal communities. However, it also decreased the abundance of some beneficial fungi and increased soil pathogenic fungi. Therefore, the duration of CCRI can not exceed 15 years, and attention can be paid to maintaining the stability of soil fungal community by regulating soil pH and AK content to reduce the negative impact of long term CCRI. This study will have important guiding significance for soil health improvement in arid areas.

Spatial variations of fungal community assembly and soil enzyme activity in rhizosphere of zonal Stipa species in inner Mongolia grassland

Rhizosphere soil fungal and enzyme activities affect the nutrient cycling of terrestrial ecosystems, and rhizosphere fungi are also important participants in the ecological process of vegetation succession, responding to changes in plant communities. Stipa is an excellent forage grass with important ecological and economic value, and has the spatial distribution pattern of floristic geographical substitution. In order to systematically investigate the synergistic response strategies of fungal communities and enzyme activities in the rhizosphere under the vegetation succession. Here we explored the turnover and assembly mechanisms of Stipa rhizosphere fungal communities and the spatial variation of metabolic activity under the succession of seven Stipa communities in northern China grassland under large scale gradients. The results indicated that the composition, abundance and diversity of fungal communities and microbial enzyme activities in rhizosphere soil differed among different Stipa species and were strikingly varied along the Stipa community changes over the geographic gradient. As the geographical distribution of Stipa community changed from east to west in grassland transect, Mortierellomycetes tended to be gradually replaced by Dothideomycetes. The null models showed that the rhizosphere fungal communities were governed primarily by the dispersal limitation of stochastic assembly processes, which showed decreased relative importance from S. grandis to S. gobica. Moreover, the MAT and MAP were the most important factors influencing the changes in the fungal community (richness, β-diversity and composition) and fungal community assembly, while SC and NP also mediated fungal community assembly processes. These findings deepen our understanding of the responses of the microbial functions and fungal community assembly processes in the rhizosphere to vegetation succession.