Functional Analysis Of Ion Channels Research Articles

Lipid composition of Xenopus oocytes used for heterologous membrane protein expression.

Biological membranes are characterized by a dynamic, heterogeneous lipid composition that can vary by cell type and species origin. Lipids are estimated to comprise 50% of the plasma membrane by weight. A growing body of evidence supports the view that membrane proteins and their adjacent lipids interact in a bidirectional manner. For example, lipid-protein interactions can affect protein function and contribute to membrane organization, such as the formation of domains. The Xenopus oocyte is a well-established classical heterologous expression system for the functional analysis of ion channels and transporters, especially those prevalent in neural tissue. This pilot research was undertaken with the goal of identifying lipids present in unfertilized Xenopus oocytes, specifically those known for their role in plasma membrane composition. Unfertilized Xenopus oocytes were purchased from a commercial vendor, frozen in liquid nitrogen, and shipped to the West Coast Metabolomics Center (WCMC) for lipid extraction. Six samples (20-30 oocytes each) were processed with an Agilent 6530B Q-TOF. During spectral analysis of the output LC/MS, over 1200 distinct lipids were identified. The MS-DIAL program (Version 4.48) assigned nomenclature and external database identifiers (InChI key; LIPIDMAPS) to 380 lipids that were grouped into 12 lipid subclasses, including canonical membrane lipids (phosphatidylcholine; phosphatidylethanolamine; sphingomyelin; ceramide; cholesterol). Estimates of relative abundance suggest that membrane lipids and triacylglycerols comprise 10% and 50% of the Xenopus oocyte lipidome, respectively. Preliminary findings may have implications for heterologous functional analysis of ion channels and other membrane transporters from the nervous system in Xenopus oocytes. Outcomes from this research are being incorporated into computational models of the membrane environment and lipid-protein interactions.

Parallel Recordings of Transmembrane hERG Channel Currents Based on Solvent-Free Lipid Bilayer Microarray.

The reconstitution of ion-channel proteins in artificially formed bilayer lipid membranes (BLMs) forms a well-defined system for the functional analysis of ion channels and screening of the effects of drugs that act on these proteins. To improve the efficiency of the BLM reconstitution system, we report on a microarray of stable solvent-free BLMs formed in microfabricated silicon (Si) chips, where micro-apertures with well-defined nano- and micro-tapered edges were fabricated. Sixteen micro-wells were manufactured in a chamber made of Teflon®, and the Si chips were individually embedded in the respective wells as a recording site. Typically, 11 to 16 BLMs were simultaneously formed with an average BLM number of 13.1, which corresponded to a formation probability of 82%. Parallel recordings of ion-channel activities from multiple BLMs were successfully demonstrated using the human ether-a-go-go-related gene (hERG) potassium channel, of which the relation to arrhythmic side effects following drug treatment is well recognized.

P2559The mechanisms of spontaneous action potential generation in sinoauricular valve of the chick embryos

Abstract Background The changes in the density of ion channels and/or damage of ion channel proteins violates the homeostasis of the potential forming ions in myocardium cells and may contribute to arrhythmogenesis. The study of ion channel function in embryos is important in order to understand the mechanisms of arrhythmia. The purpose of the present study was to identify the key ion channels that form action potentials (APs) in pacemaker cells in the area of the sinoauricular (SA) chicken embryo valve. Material and methods The embryos were removed from fertilized White Leghorn breed chicken eggs on the 10±1 day of incubation (ED10). The experiments were performed on freshly prepared strips (3 mm × 2 mm) of the right atrium, which included the left SA valve itself as well as the surrounding tissue. After that the APs were recorded from the area of left SA valve using the microelectrode technique. The functional analysis of ion channels was performed using the specific ion channel blockers. Results The strips generated APs with slow diastolic depolarization (SDD) and frequency from 132 to 251 impulses per min (ipm) (average - 177±22 ipm). The APs amplitude and dV/dtmax were 102±9 mV and 98±25 V/s (nstrips=49). At the third minute of exposure to E-4031 (1 μmol), a blocker of rapid outward K-current channels, IKr, the increase in the duration of the AP repolarization phase by 30% and the shortening of SDD by 20–25% (p<0.05; n=6) were registered. The APs generation frequency increased by 10%. Subsequently we observed the monotonic decrease in the AP amplitude due to the reduced overshoot and depolarized Emax. The electrical activity of all strips was blocked on the 20±2 min (Fig.1.a-c). Lidocaine (500 μmol), a blocker of Nav1.5 channels, increased a duration of SDD and APD90 twice, but decreased dV/dtmax by 2.5 times. The APs generation frequency decreased by 30% in comparison to the control. After 8±2 min exposure to lidocaine, the APs generation was blocked in 56% of samples. It is important to mention that in these strips right before the APs generation was blocked dV/dtmax was 30±15 V/s. In the samples, where the APs were not blocked after the exposure to lidocaine this parameter was 14±10 V/s (Fig. 1d-e). Nifedipine (10 μmol), a blocker of L-type Ca2+-channels, decreased APD90 by 56% and SDD by 25%. The APs generation frequency increased twice in comparison to the control samples (fig.1f-h). The chronotropic effects of nifedipine were dose-dependent. Nifedipine did not induce the blocking of APs generation. Figure 1. Effects of E-4031 (a-c), lidocaine (d-e) and nifedipine (e-g) on APs. Conclusions The received data demonstrate that the key role in the APs formation in ED10 embryos belong to the outward IKr and inward INa, but not to ICa,L. Thus, the mechanisms of spontaneous action potential generation in ED10 chick embryos have more in common with that in human iPSC-derived cardiomyocytes rather than in SA area cells of the ED11 mice embryos. Acknowledgement/Funding Rus fund Basic Research No. 18-34-00654; Project RAS No. 0415-2019-0006 and No. AAAA-A17-117012310152-2

3D Printed Lab-on-a-Chip Platform for Chemical Stimulation and Parallel Analysis of Ion Channel Function.

Functional imaging has been a widely established method for the assessment of ion channel function in vitro. Conventional infrastructure used for in vitro functional analysis of ion channels is typically proprietary, non-customizable, expensive, and requires a high level of skill to use and maintain. 3D desktop printing, which is employed in the rapid prototyping field, allows for quick engineering of alternatives to conventional imaging infrastructure that are customizable, low cost, and user friendly. Here, we describe an ultra-low-cost microfluidic lab-on-a-chip (LOC) device manufactured using acrylonitrile butadiene styrene (ABS) for in vitro functional imaging of ion channels that can quickly and easily be reconstructed using three-dimensional (3D) desktop printing. The device is light weight (<5 g), small (20 mm × 49 mm), and extremely low cost (<EUR 1). We simulate fluidics within the printed channels and assess the suitability of the engineered chamber to generate homogeneous mixtures during solution exchange. We demonstrate the usability of the 3D printed microfluidic device in a case study using Fluo-4-loaded human embryonal kidney-derived (HEK293) cells, recombinantly expressing the capsaicin receptor, transient receptor potential vanilloid receptor type 1 (TRPV1), as a model system. In the case study, we confirm its applicability to solution exchange for chemical stimulation and parallel functional time-lapse fluorescence microscopy-based calcium imaging. We assess the suitability of ABS for culturing HEK293 cells inside the microfluidic LOC, based on qualitative analysis of microscopic transmission light images of ABS-exposed HEK293 cells and confirm the previously reported biocompatibility of ABS. To highlight the versatility of the 3D printed microfluidic device, we provide an example for multiplication of the shown concept within a 3D printed multichannel microfluidic LOC to be used, for example, in a higher throughput format for parallelized functional analysis of ion channels. While this work focusses on Ca2+ imaging with TRPV1 channels, the device may also be useful for application with other ion channel types and in vitro models.

Reconstitution and functional characterization of ion channels from nanodiscs in lipid bilayers.

Recent studies have shown that membrane proteins can be efficiently synthesized in vitro before spontaneously inserting into soluble nanoscale lipid bilayers called nanodiscs (NDs). In this paper, we present experimental details that allow a combination of in vitro translation of ion channels into commercially available NDs followed by their direct reconstitution from these nanobilayers into standard bilayer setups for electrophysiological characterization. We present data showing that two model K+ channels, Kcv and KcsA, as well as a recently discovered dual-topology F- channel, Fluc, can be reliably reconstituted from different types of NDs into bilayers without contamination from the in vitro translation cocktail. The functional properties of Kcv and KcsA were characterized electrophysiologically and exhibited sensitivity to the lipid composition of the target DPhPC bilayer, suggesting that the channel proteins were fully exposed to the target membrane and were no longer surrounded by the lipid/protein scaffold. The single-channel properties of the three tested channels are compatible with studies from recordings of the same proteins in other expression systems. Altogether, the data show that synthesis of ion channels into NDs and their subsequent reconstitution into conventional bilayers provide a fast and reliable method for functional analysis of ion channels.

Developing High-Throughput Assays to Analyze and Screen Electrophysiological Phenotypes.

Ion channels represent nearly a quarter of all targets that currently available medications modulate, and their dysfunction underlies increasing number of human diseases. Functional analysis of ion channels have traditionally been a bottleneck in large-scale analyses. Recent technological breakthroughs in automated planar electrophysiology have democratized the technique to enable high-throughput patch clamping at scale. In this chapter, we describe the methodology to perform a phenotypic screen on voltage-gated calcium channels across many different genetic coding variations and against small-molecule modulators. We first describe the procedures to establish inducible heterologous ion channel expression in HEK293 cells, where each cell incorporates one copy of a target protein cDNA-a step that is critical for producing stable and consistent expression of ion channels. We then describe the experimental and analytical methods for analyzing the function of ion channels using high-throughput planar electrophysiology.

Mechanically stable solvent-free lipid bilayers in nano- and micro-tapered apertures for reconstitution of cell-free synthesized hERG channels

The self-assembled bilayer lipid membrane (BLM) is the basic component of the cell membrane. The reconstitution of ion channel proteins in artificially formed BLMs represents a well-defined system for the functional analysis of ion channels and screening the effects of drugs that act on them. However, because BLMs are unstable, this limits the experimental throughput of BLM reconstitution systems. Here we report on the formation of mechanically stable solvent-free BLMs in microfabricated apertures with defined nano- and micro-tapered edge structures. The role of such nano- and micro-tapered structures on the stability of the BLMs was also investigated. Finally, this BLM system was combined with a cell-free synthesized human ether-a-go-go-related gene channel, a cardiac potassium channel whose relation to arrhythmic side effects following drug treatment is well recognized. Such stable BLMs as these, when combined with a cell-free system, represent a potential platform for screening the effects of drugs that act on various ion-channel genotypes.

Phenotyping Cellular Viability by Functional Analysis of Ion Channels: GlyR-Targeted Screening in NT2-N Cells.

Glycine receptor chloride channels (GlyRs) are attractive drug targets for therapeutic intervention and are also more and more recognized in the context of in vitro neurotoxicity and developmental neurotoxicity testing. Assaying the functional properties of GlyR can serve as an indicator of cellular viability and the integrity of the developing and mature central nervous system. Human pluripotent NTERA-2 (NT2) stem cells undergo neuronal differentiation upon stimulation with retinoic acid and express a large variety of neuronal proteins-including GlyR. YFP-I152L, a halide-sensitive variant of yellow fluorescent protein, allows high-throughput fluorescence-based functional analysis of GlyRs in NT2 cells. Here we describe a protocol for phenotyping of cellular viability by functional analysis of GlyR in neuronally differentiated NT2 (NT2-N) cells using YFP-I152L as a reporter of functional integrity of GlyRs. The protocol describes neuronal differentiation of NT2 stem cells, transient transfection of NT2-N cells with YFP-I152L as well as functional imaging and analysis of data from high-content imaging.

Erratum to: Phenotyping Cellular Viability by Functional Analysis of Ion Channels: GlyR-Targeted Screening in NT2-N Cells.

Glycine receptor chloride channels (GlyRs) are attractive drug targets for therapeutic intervention and are also more and more recognized in the context of in vitro neurotoxicity and developmental neurotoxicity testing. Assaying the functional properties of GlyR can serve as an indicator of cellular viability and the integrity of the developing and mature central nervous system. Human pluripotent NTERA-2 (NT2) stem cells undergo neuronal differentiation upon stimulation with retinoic acid and express a large variety of neuronal proteins-including GlyR. YFP-I152L, a halide-sensitive variant of yellow fluorescent protein, allows high-throughput fluorescence-based functional analysis of GlyRs in NT2 cells. Here we describe a protocol for phenotyping of cellular viability by functional analysis of GlyR in neuronally differentiated NT2 (NT2-N) cells using YFP-I152L as a reporter of functional integrity of GlyRs. The protocol describes neuronal differentiation of NT2 stem cells, transient transfection of NT2-N cells with YFP-I152L as well as functional imaging and analysis of data from high-content imaging.

Mutagenesis and Functional Analysis of Ion Channels Heterologously Expressed in Mammalian Cells

We will demonstrate how to study the functional effects of introducing a point mutation in an ion channel. We study G protein-gated inwardly rectifying potassium (referred to as GIRK) channels, which are important for regulating the excitability of neurons. There are four different mammalian GIRK channel subunits (GIRK1-GIRK4) - we focus on GIRK2 because it forms a homotetramer. Stimulation of different types of G protein-coupled receptors (GPCRs), such as the muscarinic receptor (M2R), leads to activation of GIRK channels. Alcohol also directly activates GIRK channels. We will show how to mutate one amino acid by specifically changing one or more nucleotides in the cDNA for the GIRK channel. This mutated cDNA sequence will be amplified in bacteria, purified, and the presence of the point mutation will be confirmed by DNA sequencing. The cDNAs for the mutated and wild-type GIRK channels will be transfected into human embryonic kidney HEK293T cells cultured in vitro. Lastly, whole-cell patch-clamp electrophysiology will be used to study the macroscopic potassium currents through the ectopically expressed wild-type or mutated GIRK channels. In this experiment, we will examine the effect of a L257W mutation in GIRK2 channels on M2R-dependent and alcohol-dependent activation.

Mutagenesis and Functional Analysis of Ion Channels Heterologously Expressed in Mammalian Cells

We will demonstrate how to study the functional effects of introducing a point mutation in an ion channel. We study G protein-gated inwardly rectifying potassium (referred to as GIRK) channels, which are important for regulating the excitability of neurons. There are four different mammalian GIRK channel subunits (GIRK1-GIRK4)--we focus on GIRK2 because it forms a homotetramer. Stimulation of different types of G protein-coupled receptors (GPCRs), such as the muscarinic receptor (M2R), leads to activation of GIRK channels. Alcohol also directly activates GIRK channels. We will show how to mutate one amino acid by specifically changing one or more nucleotides in the cDNA for the GIRK channel. This mutated cDNA sequence will be amplified in bacteria, purified, and the presence of the point mutation will be confirmed by DNA sequencing. The cDNAs for the mutated and wild-type GIRK channels will be transfected into human embryonic kidney HEK293T cells cultured in vitro. Lastly, whole-cell patch-clamp electrophysiology will be used to study the macroscopic potassium currents through the ectopically expressed wild-type or mutated GIRK channels. In this experiment, we will examine the effect of a L257W mutation in GIRK2 channels on M2R-dependent and alcohol-dependent activation.

Tethered Lipid Bilayers for Functional Analysis of Ion Channels

not Available.